Wall clock time and date at job start Mon Mar 30 2020 01:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.47117 * 239.99426 * 3 2 1 5 5 H 1.48498 * 109.47600 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00033 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 O 1.45198 * 109.47036 * 179.97438 * 12 10 9 14 14 C 1.34231 * 116.99983 * 179.97438 * 13 12 10 15 15 O 1.20822 * 120.00142 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00053 * 180.02562 * 14 13 12 17 17 C 1.50704 * 112.85233 * 50.33479 * 16 14 13 18 18 N 1.34781 * 119.99731 * 309.66954 * 17 16 14 19 19 O 1.21277 * 120.00337 * 129.66753 * 17 16 14 20 20 C 1.53788 * 113.61602 * 279.13846 * 16 14 13 21 21 C 1.53956 * 87.02029 * 220.04841 * 20 16 14 22 22 C 1.53783 * 113.61425 * 181.53145 * 16 14 13 23 23 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 25 25 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 26 26 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 27 27 H 0.97004 * 119.99827 * 359.97438 * 18 17 16 28 28 H 0.96994 * 119.99631 * 180.02562 * 18 17 16 29 29 H 1.09004 * 113.61204 * 334.56962 * 20 16 14 30 30 H 1.09000 * 113.61389 * 105.46727 * 20 16 14 31 31 H 1.08996 * 113.53721 * 270.81020 * 21 20 16 32 32 H 1.09000 * 113.73905 * 139.93847 * 21 20 16 33 33 H 1.08999 * 113.61641 * 254.52665 * 22 16 14 34 34 H 1.08994 * 113.61435 * 25.34897 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 8 2.1875 -5.9665 -0.0016 14 6 1.6745 -7.2069 -0.0016 15 8 0.4767 -7.3653 -0.0017 16 6 2.5926 -8.4020 -0.0016 17 6 3.6520 -8.3261 1.0676 18 7 4.4024 -7.2137 1.1949 19 8 3.8293 -9.2658 1.8134 20 6 3.1455 -8.7542 -1.3927 21 6 2.9397 -10.2317 -1.0119 22 6 1.8508 -9.7485 -0.0392 23 1 -0.4850 0.8401 -0.0004 24 1 0.3535 -2.3906 0.0002 25 1 0.6170 -4.9209 0.8886 26 1 0.6176 -4.9205 -0.8913 27 1 4.2608 -6.4622 0.5981 28 1 5.0845 -7.1650 1.8827 29 1 2.5087 -8.4218 -2.2126 30 1 4.1913 -8.4791 -1.5294 31 1 3.8017 -10.6775 -0.5158 32 1 2.5559 -10.8455 -1.8268 33 1 1.8531 -10.2752 0.9151 34 1 0.8590 -9.6883 -0.4871 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116802714.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:18 Heat of formation + Delta-G solvation = -142.577738 kcal Electronic energy + Delta-G solvation = -20717.569110 eV Core-core repulsion = 17230.279217 eV Total energy + Delta-G solvation = -3487.289893 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.45365 -39.62410 -38.24460 -37.34383 -36.12191 -34.08785 -33.66929 -31.46445 -29.11420 -27.41115 -25.99179 -24.67139 -22.48374 -21.69010 -19.71539 -19.18960 -18.27841 -18.14350 -17.24931 -16.75905 -16.42991 -16.04819 -15.70964 -15.11928 -14.79290 -14.46288 -14.18131 -13.99865 -13.77477 -13.04983 -12.72534 -12.59557 -12.28792 -12.11181 -11.68582 -11.64839 -11.23377 -11.16886 -10.75513 -10.57704 -10.54556 -10.47376 -10.34893 -10.00881 -9.68686 -9.66657 -8.62595 -8.16010 -6.56705 -3.99293 1.92364 2.27783 2.72203 3.10100 3.18818 3.22817 3.35226 3.64797 3.93019 4.05480 4.16539 4.44507 4.53993 4.76904 4.90242 5.07996 5.17556 5.39088 5.44556 5.46131 5.58904 5.61272 5.67981 5.83011 5.95190 6.08579 6.42263 6.72340 7.33001 7.40890 7.63199 7.86328 8.15653 8.39642 8.99349 9.31078 9.79766 10.60184 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.038544 B = 0.003924 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.272322 B = 7133.686620 C = 7488.558849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.027 3.973 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.437 3.563 11 O -0.579 6.579 12 C 0.060 3.940 13 O -0.329 6.329 14 C 0.475 3.525 15 O -0.496 6.496 16 C -0.112 4.112 17 C 0.549 3.451 18 N -0.836 5.836 19 O -0.538 6.538 20 C -0.109 4.109 21 C -0.138 4.138 22 C -0.100 4.100 23 H 0.275 0.725 24 H 0.395 0.605 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.419 0.581 28 H 0.405 0.595 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.199 -14.428 -2.397 14.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.186 5.186 10 C 0.222 3.778 11 O -0.463 6.463 12 C -0.017 4.017 13 O -0.243 6.243 14 C 0.316 3.684 15 O -0.383 6.383 16 C -0.116 4.116 17 C 0.331 3.669 18 N -0.401 5.401 19 O -0.415 6.415 20 C -0.146 4.146 21 C -0.176 4.176 22 C -0.137 4.137 23 H 0.085 0.915 24 H 0.229 0.771 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.252 0.748 28 H 0.236 0.764 29 H 0.119 0.881 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.473 -14.923 -2.018 15.454 hybrid contribution -0.297 1.522 0.050 1.552 sum 3.176 -13.401 -1.967 13.912 Atomic orbital electron populations 1.69605 1.06034 1.28723 1.49214 1.25323 0.95682 0.99930 0.96699 0.85851 0.78772 0.80020 0.79217 1.19714 1.20831 1.19720 1.19675 0.93460 0.81710 1.48537 0.87588 1.41699 1.09413 1.04104 1.63391 1.19250 0.88321 0.83970 0.86275 1.90536 1.13295 1.86783 1.55723 1.22820 0.90842 0.84352 1.03708 1.86403 1.40810 1.14209 1.82901 1.23015 0.88279 0.84201 0.72882 1.90661 1.16204 1.86502 1.44979 1.22202 0.96526 0.93370 0.99508 1.19279 0.81348 0.82862 0.83435 1.43937 1.38916 1.18336 1.38917 1.90733 1.69229 1.37322 1.44177 1.22954 1.02606 0.96845 0.92230 1.22906 0.99637 0.95546 0.99463 1.22859 0.98645 0.90174 1.02049 0.91479 0.77134 0.89441 0.89332 0.74834 0.76397 0.88140 0.89495 0.89136 0.90031 0.88967 0.87773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.39 13.05 55.50 0.72 -22.66 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.94 20.09 29.55 -169.99 -5.02 15.07 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.30 -8.08 9.68 -14.94 -0.14 -8.22 16 8 H 0.11 2.92 7.16 -52.49 -0.38 2.54 16 9 N -0.55 -13.24 5.29 -10.96 -0.06 -13.29 16 10 C 0.44 9.81 7.86 -10.98 -0.09 9.72 16 11 O -0.58 -14.64 16.08 -14.12 -0.23 -14.87 16 12 C 0.06 1.06 5.94 36.01 0.21 1.28 16 13 O -0.33 -5.46 7.68 -45.91 -0.35 -5.81 16 14 C 0.47 7.23 7.00 36.00 0.25 7.48 16 15 O -0.50 -8.37 15.66 -18.75 -0.29 -8.66 16 16 C -0.11 -1.41 1.20 -155.99 -0.19 -1.59 16 17 C 0.55 7.54 6.90 -10.98 -0.08 7.47 16 18 N -0.84 -10.32 8.65 31.22 0.27 -10.05 16 19 O -0.54 -8.63 16.67 5.56 0.09 -8.54 16 20 C -0.11 -1.05 7.22 -25.82 -0.19 -1.24 16 21 C -0.14 -1.23 7.76 -25.82 -0.20 -1.43 16 22 C -0.10 -1.10 6.78 -25.91 -0.18 -1.28 16 23 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 24 H 0.40 9.09 7.90 -40.82 -0.32 8.77 16 25 H 0.09 1.44 8.13 -51.93 -0.42 1.02 16 26 H 0.09 1.42 8.13 -51.93 -0.42 1.00 16 27 H 0.42 5.52 6.94 -40.82 -0.28 5.24 16 28 H 0.40 4.31 8.93 -40.82 -0.36 3.94 16 29 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16 30 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.09 1.09 7.41 -51.93 -0.38 0.70 16 34 H 0.10 1.12 7.45 -51.93 -0.39 0.73 16 LS Contribution 302.63 15.07 4.56 4.56 Total: -1.00 -31.27 302.63 -4.78 -36.05 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -3.78 Total: 15.45 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: -0.69 Total: 12.76 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.94 Total: -46.01 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -0.78 Total: -37.87 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.27 -4.78 -36.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116802714.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.532 kcal (2) G-P(sol) polarization free energy of solvation -31.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds