Wall clock time and date at job start Mon Mar 30 2020 01:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.47117 * 239.99426 * 3 2 1 5 5 H 1.48498 * 109.47600 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00033 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 O 1.45198 * 109.47036 * 179.97438 * 12 10 9 14 14 C 1.34231 * 116.99983 * 179.97438 * 13 12 10 15 15 O 1.20822 * 120.00142 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00053 * 180.02562 * 14 13 12 17 17 C 1.50704 * 112.85233 * 50.33479 * 16 14 13 18 18 N 1.34781 * 119.99731 * 309.66954 * 17 16 14 19 19 O 1.21277 * 120.00337 * 129.66753 * 17 16 14 20 20 C 1.53788 * 113.61602 * 279.13846 * 16 14 13 21 21 C 1.53956 * 87.02029 * 220.04841 * 20 16 14 22 22 C 1.53783 * 113.61425 * 181.53145 * 16 14 13 23 23 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 25 25 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 26 26 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 27 27 H 0.97004 * 119.99827 * 359.97438 * 18 17 16 28 28 H 0.96994 * 119.99631 * 180.02562 * 18 17 16 29 29 H 1.09004 * 113.61204 * 334.56962 * 20 16 14 30 30 H 1.09000 * 113.61389 * 105.46727 * 20 16 14 31 31 H 1.08996 * 113.53721 * 270.81020 * 21 20 16 32 32 H 1.09000 * 113.73905 * 139.93847 * 21 20 16 33 33 H 1.08999 * 113.61641 * 254.52665 * 22 16 14 34 34 H 1.08994 * 113.61435 * 25.34897 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 8 2.1875 -5.9665 -0.0016 14 6 1.6745 -7.2069 -0.0016 15 8 0.4767 -7.3653 -0.0017 16 6 2.5926 -8.4020 -0.0016 17 6 3.6520 -8.3261 1.0676 18 7 4.4024 -7.2137 1.1949 19 8 3.8293 -9.2658 1.8134 20 6 3.1455 -8.7542 -1.3927 21 6 2.9397 -10.2317 -1.0119 22 6 1.8508 -9.7485 -0.0392 23 1 -0.4850 0.8401 -0.0004 24 1 0.3535 -2.3906 0.0002 25 1 0.6170 -4.9209 0.8886 26 1 0.6176 -4.9205 -0.8913 27 1 4.2608 -6.4622 0.5981 28 1 5.0845 -7.1650 1.8827 29 1 2.5087 -8.4218 -2.2126 30 1 4.1913 -8.4791 -1.5294 31 1 3.8017 -10.6775 -0.5158 32 1 2.5559 -10.8455 -1.8268 33 1 1.8531 -10.2752 0.9151 34 1 0.8590 -9.6883 -0.4871 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116802714.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:18 Heat of formation + Delta-G solvation = -165.393380 kcal Electronic energy + Delta-G solvation = -20718.558471 eV Core-core repulsion = 17230.279217 eV Total energy + Delta-G solvation = -3488.279253 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.55850 -40.88493 -39.94541 -38.44290 -37.40049 -36.01046 -34.75421 -33.39791 -30.51209 -28.60606 -26.82675 -26.48962 -23.62006 -22.71171 -21.44523 -20.25080 -20.04791 -19.43348 -18.38035 -17.98773 -17.71761 -17.55628 -17.01916 -16.55132 -16.03146 -15.90321 -15.74305 -15.43119 -15.01665 -14.46593 -14.05111 -13.72182 -13.54268 -13.50706 -13.21569 -12.92231 -12.68506 -12.47073 -12.13276 -12.04745 -11.94704 -11.59255 -11.54785 -11.49736 -11.11747 -10.76349 -10.48758 -10.10244 -8.51200 -6.01496 0.75335 1.06735 1.38591 1.43828 1.51892 1.58410 1.88554 2.29629 2.33954 2.91476 3.08816 3.14901 3.29905 3.58419 3.70766 3.79971 4.03027 4.13957 4.21763 4.33663 4.65175 4.66437 4.85531 4.93937 5.03207 5.13483 5.33000 5.38351 5.72909 5.89710 6.25139 6.37963 6.50838 7.03931 7.10570 7.41544 7.93461 8.65478 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.038544 B = 0.003924 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.272322 B = 7133.686620 C = 7488.558849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.009 4.009 3 Si 0.996 3.004 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.336 4.336 8 H 0.088 0.912 9 N -0.559 5.559 10 C 0.440 3.560 11 O -0.609 6.609 12 C 0.069 3.931 13 O -0.335 6.335 14 C 0.478 3.522 15 O -0.513 6.513 16 C -0.119 4.119 17 C 0.548 3.452 18 N -0.829 5.829 19 O -0.563 6.563 20 C -0.103 4.103 21 C -0.124 4.124 22 C -0.101 4.101 23 H 0.280 0.720 24 H 0.399 0.601 25 H 0.102 0.898 26 H 0.110 0.890 27 H 0.417 0.583 28 H 0.412 0.588 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.242 -14.843 -3.147 15.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.209 4.209 3 Si 0.819 3.181 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.106 0.894 9 N -0.196 5.196 10 C 0.226 3.774 11 O -0.496 6.496 12 C -0.008 4.008 13 O -0.250 6.250 14 C 0.320 3.680 15 O -0.401 6.401 16 C -0.123 4.123 17 C 0.330 3.670 18 N -0.393 5.393 19 O -0.443 6.443 20 C -0.141 4.141 21 C -0.161 4.161 22 C -0.139 4.139 23 H 0.089 0.911 24 H 0.233 0.767 25 H 0.120 0.880 26 H 0.128 0.872 27 H 0.249 0.751 28 H 0.244 0.756 29 H 0.130 0.870 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.126 0.874 33 H 0.099 0.901 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.511 -15.344 -2.767 15.982 hybrid contribution -0.302 1.589 0.303 1.646 sum 3.208 -13.755 -2.464 14.337 Atomic orbital electron populations 1.69668 1.06987 1.29720 1.49297 1.26093 0.96510 1.02571 0.95753 0.84940 0.77735 0.76271 0.79148 1.19388 1.19728 1.19535 1.19694 0.93021 0.83282 1.50506 0.89420 1.41738 1.09554 1.04241 1.64082 1.19975 0.88158 0.85098 0.84169 1.90511 1.14930 1.87583 1.56560 1.22599 0.90266 0.82473 1.05452 1.86417 1.40765 1.14589 1.83213 1.23509 0.88515 0.83965 0.71963 1.90654 1.17011 1.86555 1.45845 1.22445 0.96288 0.92558 1.01049 1.19470 0.81492 0.82655 0.83336 1.43914 1.38762 1.17789 1.38812 1.90722 1.70178 1.38219 1.45152 1.23072 1.03276 0.97175 0.90552 1.22857 0.98557 0.95350 0.99381 1.22929 0.99504 0.89166 1.02296 0.91057 0.76699 0.87955 0.87200 0.75084 0.75580 0.86966 0.88536 0.89493 0.87394 0.90071 0.87354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.48 13.05 21.66 0.28 -47.19 16 2 C -0.01 -0.43 5.50 84.92 0.47 0.03 16 3 Si 1.00 40.70 29.55 68.60 2.03 42.72 16 4 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 5 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 7 C -0.34 -17.99 9.68 84.04 0.81 -17.18 16 8 H 0.09 4.93 7.16 -2.91 -0.02 4.91 16 9 N -0.56 -27.07 5.29 -306.98 -1.62 -28.69 16 10 C 0.44 19.66 7.86 87.66 0.69 20.35 16 11 O -0.61 -31.01 16.08 15.72 0.25 -30.76 16 12 C 0.07 2.36 5.94 71.24 0.42 2.78 16 13 O -0.33 -10.73 7.68 -45.07 -0.35 -11.08 16 14 C 0.48 13.87 7.00 71.24 0.50 14.37 16 15 O -0.51 -16.50 15.66 21.98 0.34 -16.16 16 16 C -0.12 -2.83 1.20 -53.14 -0.06 -2.89 16 17 C 0.55 14.58 6.90 87.66 0.60 15.19 16 18 N -0.83 -19.88 8.65 -173.53 -1.50 -21.38 16 19 O -0.56 -17.78 16.67 -3.02 -0.05 -17.83 16 20 C -0.10 -1.75 7.22 31.18 0.23 -1.53 16 21 C -0.12 -1.89 7.76 31.18 0.24 -1.65 16 22 C -0.10 -2.08 6.78 31.12 0.21 -1.87 16 23 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16 24 H 0.40 18.39 7.90 -92.71 -0.73 17.66 16 25 H 0.10 3.23 8.13 -2.39 -0.02 3.21 16 26 H 0.11 3.32 8.13 -2.39 -0.02 3.30 16 27 H 0.42 10.71 6.94 -92.71 -0.64 10.07 16 28 H 0.41 8.55 8.93 -92.71 -0.83 7.72 16 29 H 0.11 1.68 8.09 -2.39 -0.02 1.66 16 30 H 0.10 1.47 8.09 -2.39 -0.02 1.45 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 1.86 7.41 -2.39 -0.02 1.84 16 34 H 0.11 2.14 7.45 -2.39 -0.02 2.12 16 Total: -1.00 -66.12 302.63 2.47 -63.64 By element: Atomic # 1 Polarization: 40.16 SS G_CDS: -1.03 Total: 39.13 kcal Atomic # 6 Polarization: 23.48 SS G_CDS: 4.11 Total: 27.59 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -2.84 Total: -97.26 kcal Atomic # 8 Polarization: -76.03 SS G_CDS: 0.20 Total: -75.83 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.72 kcal Total: -66.12 2.47 -63.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116802714.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.749 kcal (2) G-P(sol) polarization free energy of solvation -66.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds