Wall clock time and date at job start Mon Mar 30 2020 01:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.46944 * 2 1 4 4 C 1.34783 * 119.99984 * 179.97438 * 3 2 1 5 5 O 1.21276 * 119.99647 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99852 * 179.97438 * 4 3 2 7 7 S 1.80999 * 109.46668 * 179.97438 * 6 4 3 8 8 C 1.76199 * 99.99815 * 179.97438 * 7 6 4 9 9 N 1.32388 * 126.26079 * 359.97438 * 8 7 6 10 10 N 1.28511 * 110.20972 * 180.02562 * 9 8 7 11 11 C 1.33102 * 109.74196 * 0.02562 * 10 9 8 12 12 C 1.39784 * 126.56422 * 179.97438 * 11 10 9 13 13 H 1.07990 * 119.99937 * 186.21013 * 12 11 10 14 14 C 1.40079 * 119.99787 * 6.21173 * 12 11 10 15 15 N 1.30818 * 120.00007 * 6.44701 * 14 12 11 16 16 Si 1.86802 * 120.00049 * 186.44417 * 14 12 11 17 17 H 1.48499 * 109.47321 * 265.01629 * 16 14 12 18 18 H 1.48499 * 109.46774 * 25.01756 * 16 14 12 19 19 H 1.48500 * 109.47127 * 145.01048 * 16 14 12 20 20 N 1.36673 * 126.25843 * 180.30346 * 8 7 6 21 21 C 1.46491 * 127.15480 * 359.97438 * 20 8 7 22 22 H 1.08998 * 109.47328 * 300.00097 * 1 2 3 23 23 H 1.09002 * 109.46928 * 60.00093 * 1 2 3 24 24 H 1.09000 * 109.47386 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47328 * 239.99903 * 2 1 3 26 26 H 1.09002 * 109.46928 * 119.99907 * 2 1 3 27 27 H 0.97005 * 120.00173 * 0.02562 * 3 2 1 28 28 H 1.09006 * 109.47121 * 60.00355 * 6 4 3 29 29 H 1.08993 * 109.47471 * 300.00044 * 6 4 3 30 30 H 0.97004 * 120.00095 * 179.97438 * 15 14 12 31 31 H 1.09010 * 109.46877 * 270.13447 * 21 20 8 32 32 H 1.09003 * 109.47456 * 30.12807 * 21 20 8 33 33 H 1.08999 * 109.47490 * 150.13479 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6276 0.0005 5 8 4.1315 0.7057 0.0015 6 6 3.8457 3.0484 -0.0001 7 16 5.6557 3.0484 0.0016 8 6 5.9616 4.7836 -0.0002 9 7 5.0463 5.7401 -0.0026 10 7 5.6107 6.8946 -0.0038 11 6 6.9337 6.7484 -0.0028 12 6 7.8847 7.7728 -0.0041 13 1 8.9335 7.5357 -0.1042 14 6 7.4773 9.1068 0.1245 15 7 6.2236 9.3869 0.3719 16 14 8.7241 10.4859 -0.0572 17 1 9.2252 10.8802 1.2839 18 1 9.8598 10.0194 -0.8925 19 1 8.0786 11.6544 -0.7077 20 7 7.1873 5.3883 -0.0056 21 6 8.4973 4.7326 -0.0105 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.3879 2.1185 0.0004 28 1 3.4819 3.5628 0.8895 29 1 3.4828 3.5617 -0.8905 30 1 5.9415 10.3107 0.4613 31 1 8.8253 4.5686 1.0160 32 1 8.4224 3.7748 -0.5254 33 1 9.2190 5.3666 -0.5256 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116874095.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:56 Heat of formation + Delta-G solvation = 26.462554 kcal Electronic energy + Delta-G solvation = -17668.442588 eV Core-core repulsion = 14663.528455 eV Total energy + Delta-G solvation = -3004.914134 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.50775 -39.60753 -35.40848 -33.70242 -33.31689 -31.44229 -29.44427 -28.87123 -26.47152 -25.50914 -23.11809 -21.01549 -20.79603 -20.32767 -17.44005 -17.00086 -16.58739 -15.88845 -15.66283 -15.35717 -14.78015 -14.42489 -14.39178 -13.70053 -13.47970 -13.14909 -12.66488 -12.55382 -12.24764 -12.20034 -12.09518 -11.67911 -11.40758 -11.29900 -10.93171 -10.41399 -10.26199 -9.97572 -9.72756 -9.59767 -9.23627 -8.70434 -8.44927 -8.37948 -6.80904 -6.67388 -4.57018 1.83685 2.59135 2.79656 2.90989 3.06381 3.10384 3.19856 3.35275 3.87159 4.24308 4.40201 4.63351 4.83302 4.84232 5.07942 5.31004 5.32131 5.53793 5.57989 5.65422 5.67050 5.77482 5.91733 6.07569 6.27971 6.75668 6.89177 7.23454 7.31711 7.48845 7.88176 8.11156 8.17785 8.69698 8.85574 10.26251 10.61492 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.044140 B = 0.003752 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.199682 B = 7460.028513 C = 8056.831350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.730 5.730 4 C 0.534 3.466 5 O -0.527 6.527 6 C -0.134 4.134 7 S 0.019 5.981 8 C 0.032 3.968 9 N -0.290 5.290 10 N -0.336 5.336 11 C 0.348 3.652 12 C -0.449 4.449 13 H 0.084 0.916 14 C 0.080 3.920 15 N -0.739 5.739 16 Si 0.920 3.080 17 H -0.270 1.270 18 H -0.262 1.262 19 H -0.274 1.274 20 N -0.513 5.513 21 C 0.101 3.899 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.404 0.596 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.279 0.721 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.795 -11.615 -0.534 12.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.009 4.009 3 N -0.384 5.384 4 C 0.319 3.681 5 O -0.403 6.403 6 C -0.285 4.285 7 S 0.244 5.756 8 C -0.340 4.340 9 N -0.136 5.136 10 N -0.183 5.183 11 C 0.104 3.896 12 C -0.489 4.489 13 H 0.103 0.897 14 C -0.145 4.145 15 N -0.363 5.363 16 Si 0.744 3.256 17 H -0.195 1.195 18 H -0.186 1.186 19 H -0.199 1.199 20 N -0.215 5.215 21 C -0.044 4.044 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.239 0.761 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.044 -12.405 -0.500 13.809 hybrid contribution 0.680 1.591 -0.044 1.731 sum -5.364 -10.814 -0.544 12.084 Atomic orbital electron populations 1.22010 0.94401 1.03170 1.02708 1.21302 0.94202 0.82885 1.02478 1.45949 1.06867 1.09107 1.76516 1.19940 0.82400 0.90177 0.75598 1.90720 1.55002 1.45915 1.48708 1.23387 0.99173 0.97049 1.08934 1.85054 1.01225 0.93744 1.95571 1.25689 0.86292 0.99015 1.23014 1.74487 1.26975 0.95903 1.16231 1.75383 1.02540 1.10878 1.29535 1.21622 0.93355 0.79795 0.94855 1.18100 0.92915 0.88908 1.48959 0.89745 1.25785 0.96010 0.99603 0.93139 1.69991 1.15923 1.20876 1.29495 0.86114 0.80538 0.79732 0.79211 1.19481 1.18563 1.19914 1.46027 1.04652 1.06725 1.64112 1.21515 0.83672 0.97468 1.01782 0.91858 0.91857 0.90822 0.91449 0.91447 0.76142 0.86258 0.86287 0.90973 0.92401 0.91456 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 10.03 37.16 0.37 -0.60 16 2 C 0.12 1.03 6.39 -4.04 -0.03 1.00 16 3 N -0.73 -7.66 5.56 -60.29 -0.33 -7.99 16 4 C 0.53 7.76 7.85 -10.98 -0.09 7.67 16 5 O -0.53 -9.41 15.86 5.56 0.09 -9.32 16 6 C -0.13 -2.12 5.71 36.01 0.21 -1.91 16 7 S 0.02 0.36 20.92 -107.50 -2.25 -1.89 16 8 C 0.03 0.77 8.09 -87.28 -0.71 0.06 16 9 N -0.29 -7.86 11.62 30.89 0.36 -7.50 16 10 N -0.34 -10.07 10.56 31.26 0.33 -9.74 16 11 C 0.35 9.78 7.50 -154.80 -1.16 8.61 16 12 C -0.45 -11.91 9.05 -38.31 -0.35 -12.26 16 13 H 0.08 2.03 7.26 -52.49 -0.38 1.65 16 14 C 0.08 2.04 5.49 -17.29 -0.09 1.95 16 15 N -0.74 -20.22 12.00 55.56 0.67 -19.55 16 16 Si 0.92 18.49 29.57 -169.99 -5.03 13.47 16 17 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 18 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 19 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 20 N -0.51 -12.57 3.26 -123.17 -0.40 -12.98 16 21 C 0.10 1.88 10.89 59.84 0.65 2.53 16 22 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.40 3.22 8.47 -40.82 -0.35 2.88 16 28 H 0.12 1.85 8.14 -51.91 -0.42 1.43 16 29 H 0.12 1.84 8.14 -51.92 -0.42 1.41 16 30 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 31 H 0.06 1.00 8.14 -51.92 -0.42 0.57 16 32 H 0.07 1.12 7.85 -51.93 -0.41 0.72 16 33 H 0.08 1.37 7.48 -51.93 -0.39 0.98 16 LS Contribution 306.15 15.07 4.61 4.61 Total: -1.00 -34.86 306.15 -7.18 -42.05 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -4.04 Total: 1.78 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -1.19 Total: 7.07 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: 0.62 Total: -57.76 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.47 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -2.25 Total: -1.89 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.86 -7.18 -42.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116874095.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.511 kcal (2) G-P(sol) polarization free energy of solvation -34.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds