Wall clock time and date at job start Mon Mar 30 2020 01:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.46944 * 2 1 4 4 C 1.34783 * 119.99984 * 179.97438 * 3 2 1 5 5 O 1.21276 * 119.99647 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99852 * 179.97438 * 4 3 2 7 7 S 1.80999 * 109.46668 * 179.97438 * 6 4 3 8 8 C 1.76199 * 99.99815 * 179.97438 * 7 6 4 9 9 N 1.32388 * 126.26079 * 359.97438 * 8 7 6 10 10 N 1.28511 * 110.20972 * 180.02562 * 9 8 7 11 11 C 1.33102 * 109.74196 * 0.02562 * 10 9 8 12 12 C 1.39784 * 126.56422 * 179.97438 * 11 10 9 13 13 H 1.07990 * 119.99937 * 186.21013 * 12 11 10 14 14 C 1.40079 * 119.99787 * 6.21173 * 12 11 10 15 15 N 1.30818 * 120.00007 * 6.44701 * 14 12 11 16 16 Si 1.86802 * 120.00049 * 186.44417 * 14 12 11 17 17 H 1.48499 * 109.47321 * 265.01629 * 16 14 12 18 18 H 1.48499 * 109.46774 * 25.01756 * 16 14 12 19 19 H 1.48500 * 109.47127 * 145.01048 * 16 14 12 20 20 N 1.36673 * 126.25843 * 180.30346 * 8 7 6 21 21 C 1.46491 * 127.15480 * 359.97438 * 20 8 7 22 22 H 1.08998 * 109.47328 * 300.00097 * 1 2 3 23 23 H 1.09002 * 109.46928 * 60.00093 * 1 2 3 24 24 H 1.09000 * 109.47386 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47328 * 239.99903 * 2 1 3 26 26 H 1.09002 * 109.46928 * 119.99907 * 2 1 3 27 27 H 0.97005 * 120.00173 * 0.02562 * 3 2 1 28 28 H 1.09006 * 109.47121 * 60.00355 * 6 4 3 29 29 H 1.08993 * 109.47471 * 300.00044 * 6 4 3 30 30 H 0.97004 * 120.00095 * 179.97438 * 15 14 12 31 31 H 1.09010 * 109.46877 * 270.13447 * 21 20 8 32 32 H 1.09003 * 109.47456 * 30.12807 * 21 20 8 33 33 H 1.08999 * 109.47490 * 150.13479 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6276 0.0005 5 8 4.1315 0.7057 0.0015 6 6 3.8457 3.0484 -0.0001 7 16 5.6557 3.0484 0.0016 8 6 5.9616 4.7836 -0.0002 9 7 5.0463 5.7401 -0.0026 10 7 5.6107 6.8946 -0.0038 11 6 6.9337 6.7484 -0.0028 12 6 7.8847 7.7728 -0.0041 13 1 8.9335 7.5357 -0.1042 14 6 7.4773 9.1068 0.1245 15 7 6.2236 9.3869 0.3719 16 14 8.7241 10.4859 -0.0572 17 1 9.2252 10.8802 1.2839 18 1 9.8598 10.0194 -0.8925 19 1 8.0786 11.6544 -0.7077 20 7 7.1873 5.3883 -0.0056 21 6 8.4973 4.7326 -0.0105 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.3879 2.1185 0.0004 28 1 3.4819 3.5628 0.8895 29 1 3.4828 3.5617 -0.8905 30 1 5.9415 10.3107 0.4613 31 1 8.8253 4.5686 1.0160 32 1 8.4224 3.7748 -0.5254 33 1 9.2190 5.3666 -0.5256 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116874095.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:56 Heat of formation + Delta-G solvation = 1.969738 kcal Electronic energy + Delta-G solvation = -17669.504677 eV Core-core repulsion = 14663.528455 eV Total energy + Delta-G solvation = -3005.976222 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.45423 -40.75840 -36.36546 -35.62057 -35.15273 -32.46762 -31.30889 -30.00692 -28.21388 -27.38818 -23.86703 -22.79366 -22.51092 -21.74087 -19.28532 -18.38133 -17.88319 -17.31935 -16.97742 -16.74346 -16.50293 -16.12037 -15.36466 -15.21581 -14.96241 -14.48540 -14.00950 -13.80334 -13.74140 -13.32739 -13.10551 -12.95459 -12.73685 -12.68898 -12.37309 -12.02616 -11.89287 -11.66960 -11.41493 -11.19249 -10.59079 -10.40140 -10.29741 -10.16830 -8.57428 -8.53320 -6.57195 0.29422 1.16892 1.19676 1.40854 1.43045 1.59233 1.62055 2.15270 2.20041 2.43761 2.50892 3.33670 3.63174 4.01297 4.08723 4.14162 4.24192 4.37118 4.45617 4.53213 4.62527 4.87337 4.92628 4.96608 5.06714 5.27757 5.32360 5.38176 5.57248 6.02487 6.22633 6.35845 6.76154 6.92000 7.04628 8.40838 8.62456 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.044140 B = 0.003752 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.199682 B = 7460.028513 C = 8056.831350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.110 3.890 3 N -0.711 5.711 4 C 0.539 3.461 5 O -0.564 6.564 6 C -0.130 4.130 7 S 0.040 5.960 8 C 0.043 3.957 9 N -0.325 5.325 10 N -0.389 5.389 11 C 0.319 3.681 12 C -0.473 4.473 13 H 0.103 0.897 14 C 0.031 3.969 15 N -0.788 5.788 16 Si 1.006 2.994 17 H -0.260 1.260 18 H -0.249 1.249 19 H -0.271 1.271 20 N -0.520 5.520 21 C 0.093 3.907 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.088 0.912 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.418 0.582 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.285 0.715 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.385 -12.330 -0.690 13.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.013 4.013 3 N -0.365 5.365 4 C 0.323 3.677 5 O -0.443 6.443 6 C -0.282 4.282 7 S 0.265 5.735 8 C -0.330 4.330 9 N -0.170 5.170 10 N -0.236 5.236 11 C 0.073 3.927 12 C -0.513 4.513 13 H 0.121 0.879 14 C -0.190 4.190 15 N -0.413 5.413 16 Si 0.825 3.175 17 H -0.185 1.185 18 H -0.172 1.172 19 H -0.196 1.196 20 N -0.222 5.222 21 C -0.050 4.050 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.107 0.893 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.255 0.745 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.676 -13.137 -0.655 14.326 hybrid contribution 0.447 1.589 0.015 1.651 sum -5.228 -11.549 -0.640 12.693 Atomic orbital electron populations 1.21972 0.91661 1.04397 1.03360 1.21490 0.96358 0.81450 1.01966 1.45895 1.05612 1.10644 1.74307 1.19662 0.83507 0.88838 0.75651 1.90708 1.56150 1.46470 1.50974 1.23472 0.96737 0.98515 1.09491 1.85032 1.04286 0.89241 1.94990 1.26589 0.86093 1.01102 1.19241 1.74359 1.27915 0.95990 1.18712 1.75248 1.04058 1.12578 1.31670 1.22036 0.93364 0.81589 0.95704 1.18614 0.93602 0.89542 1.49551 0.87937 1.26959 0.98100 1.02145 0.91763 1.70123 1.18558 1.21887 1.30754 0.84850 0.77548 0.75526 0.79596 1.18475 1.17234 1.19552 1.46358 1.06450 1.06071 1.63305 1.21857 0.81522 0.98265 1.03377 0.91200 0.91174 0.89327 0.91982 0.92014 0.74478 0.85835 0.85753 0.90444 0.90794 0.89306 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 10.03 71.98 0.72 -0.70 16 2 C 0.11 1.77 6.39 86.38 0.55 2.32 16 3 N -0.71 -13.66 5.56 -463.06 -2.57 -16.23 16 4 C 0.54 15.02 7.85 87.66 0.69 15.71 16 5 O -0.56 -19.58 15.86 -3.02 -0.05 -19.63 16 6 C -0.13 -4.03 5.71 71.24 0.41 -3.62 16 7 S 0.04 1.50 20.92 -56.49 -1.18 0.31 16 8 C 0.04 2.11 8.09 179.18 1.45 3.56 16 9 N -0.32 -18.07 11.62 -56.17 -0.65 -18.72 16 10 N -0.39 -24.10 10.56 -55.01 -0.58 -24.69 16 11 C 0.32 18.30 7.50 133.23 1.00 19.30 16 12 C -0.47 -25.30 9.05 23.09 0.21 -25.10 16 13 H 0.10 4.87 7.26 -2.92 -0.02 4.85 16 14 C 0.03 1.60 5.49 85.29 0.47 2.07 16 15 N -0.79 -44.31 12.00 21.85 0.26 -44.05 16 16 Si 1.01 37.57 29.57 68.60 2.03 39.60 16 17 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 18 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 19 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 20 N -0.52 -25.51 3.26 -543.61 -1.77 -27.28 16 21 C 0.09 3.34 10.89 127.77 1.39 4.73 16 22 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 23 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 27 H 0.42 5.77 8.47 -92.70 -0.79 4.99 16 28 H 0.12 3.76 8.14 -2.39 -0.02 3.74 16 29 H 0.12 3.75 8.14 -2.40 -0.02 3.73 16 30 H 0.29 14.42 8.30 -92.71 -0.77 13.65 16 31 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 32 H 0.09 2.79 7.85 -2.39 -0.02 2.77 16 33 H 0.09 3.03 7.48 -2.39 -0.02 3.01 16 Total: -1.00 -77.84 306.15 2.72 -75.11 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.35 Total: 17.30 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 6.89 Total: 18.26 kcal Atomic # 7 Polarization: -125.65 SS G_CDS: -5.31 Total: -130.96 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.05 Total: -19.63 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.60 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -1.18 Total: 0.31 kcal Total: -77.84 2.72 -75.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116874095.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.084 kcal (2) G-P(sol) polarization free energy of solvation -77.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds