Wall clock time and date at job start Mon Mar 30 2020 01:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.20822 * 119.99840 * 240.00038 * 12 2 1 14 14 O 1.34228 * 120.00316 * 60.00271 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 C 1.50707 * 109.46995 * 179.97438 * 15 14 12 17 17 C 1.38258 * 119.99980 * 359.97438 * 16 15 14 18 18 C 1.38214 * 120.06819 * 180.02562 * 17 16 15 19 19 C 1.38253 * 120.07291 * 359.97438 * 18 17 16 20 20 C 1.38369 * 119.99888 * 359.97438 * 19 18 17 21 21 F 1.35104 * 120.03453 * 180.02562 * 20 19 18 22 22 C 1.38360 * 119.99984 * 179.72623 * 16 15 14 23 23 F 1.35109 * 120.03520 * 359.97165 * 22 16 15 24 24 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 26 26 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 29 29 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 30 30 H 1.08000 * 119.96431 * 0.02562 * 17 16 15 31 31 H 1.08006 * 119.96012 * 180.02562 * 18 17 16 32 32 H 1.07999 * 120.00330 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0323 -0.7103 -1.2305 13 8 2.7269 -1.6927 -1.1197 14 8 1.7081 -0.2516 -2.4496 15 6 2.2267 -0.9861 -3.5897 16 6 1.7618 -0.3294 -4.8640 17 6 0.9639 0.7984 -4.8093 18 6 0.5363 1.4015 -5.9771 19 6 0.9060 0.8786 -7.2024 20 6 1.7053 -0.2493 -7.2606 21 9 2.0674 -0.7605 -8.4576 22 6 2.1378 -0.8521 -6.0887 23 9 2.9221 -1.9509 -6.1430 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 0.7089 1.1611 3.4845 28 1 3.3163 -0.9858 -3.5570 29 1 1.8625 -2.0129 -3.5567 30 1 0.6745 1.2085 -3.8530 31 1 -0.0866 2.2827 -5.9323 32 1 0.5716 1.3511 -8.1142 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118466284.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:41 Heat of formation + Delta-G solvation = -159.218216 kcal Electronic energy + Delta-G solvation = -19873.440622 eV Core-core repulsion = 16242.048877 eV Total energy + Delta-G solvation = -3631.391745 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.62222 -48.70119 -39.90581 -38.93555 -35.91441 -33.94950 -32.24301 -30.61303 -30.46212 -26.88570 -25.25471 -23.47037 -22.84217 -21.88950 -19.86428 -18.15002 -17.37406 -17.08633 -16.65777 -16.55892 -15.99052 -15.86390 -15.55972 -15.08533 -14.96117 -14.56476 -14.37829 -13.64184 -13.35827 -13.07189 -12.71531 -12.45985 -12.13012 -11.85012 -11.57094 -11.34270 -11.07901 -10.86274 -10.74983 -10.47287 -10.31856 -10.10068 -9.23507 -9.11574 -9.04208 -8.93168 -8.49039 -6.15141 -4.20777 0.71588 0.76483 3.10650 3.15579 3.21195 3.30572 3.33298 3.39386 3.68855 4.15752 4.30179 4.38458 4.62137 4.71277 4.95329 5.18418 5.31901 5.37159 5.51772 5.56947 5.72479 5.93121 6.03434 6.18176 6.54065 6.59821 6.78578 6.80922 7.09201 7.36996 7.68834 7.88985 8.08283 8.73831 8.87786 9.45143 10.92179 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.042819 B = 0.003816 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.756241 B = 7336.624379 C = 7897.875735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.060 3.940 3 H 0.066 0.934 4 C -0.515 4.515 5 H 0.075 0.925 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.906 3.094 9 H -0.286 1.286 10 H -0.275 1.275 11 H -0.275 1.275 12 C 0.467 3.533 13 O -0.513 6.513 14 O -0.362 6.362 15 C 0.104 3.896 16 C -0.089 4.089 17 C -0.077 4.077 18 C -0.099 4.099 19 C -0.130 4.130 20 C 0.065 3.935 21 F -0.130 7.130 22 C 0.070 3.930 23 F -0.126 7.126 24 H 0.031 0.969 25 H 0.097 0.903 26 H 0.023 0.977 27 H 0.264 0.736 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.156 0.844 31 H 0.143 0.857 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.196 2.588 -17.167 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.041 3.959 3 H 0.083 0.917 4 C -0.553 4.553 5 H 0.093 0.907 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.733 3.267 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.311 3.689 13 O -0.399 6.399 14 O -0.281 6.281 15 C 0.029 3.971 16 C -0.091 4.091 17 C -0.095 4.095 18 C -0.117 4.117 19 C -0.149 4.149 20 C 0.045 3.955 21 F -0.109 7.109 22 C 0.050 3.950 23 F -0.105 7.105 24 H 0.051 0.949 25 H 0.115 0.885 26 H 0.042 0.958 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.174 0.826 31 H 0.161 0.839 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.006 2.322 -17.061 17.335 hybrid contribution 0.649 -0.908 0.421 1.193 sum -1.357 1.414 -16.640 16.755 Atomic orbital electron populations 1.21745 0.95502 1.00134 1.01767 1.18780 0.94899 0.96998 0.85255 0.91658 1.21092 1.32132 1.13347 0.88759 0.90665 1.24926 0.94834 0.94987 0.99125 1.69862 1.36390 1.22732 1.24043 0.86424 0.79322 0.79686 0.81265 1.21184 1.20060 1.20059 1.25446 0.76605 0.83325 0.83515 1.90520 1.36168 1.26640 1.86562 1.86554 1.70592 1.55668 1.15270 1.21359 0.99230 0.95003 0.81481 1.19690 0.99642 0.97525 0.92195 1.21200 0.94725 0.93306 1.00274 1.21174 0.99395 1.00214 0.90925 1.21115 0.98589 0.94935 1.00249 1.17546 1.01863 0.96559 0.79548 1.91524 1.90311 1.86490 1.42578 1.17345 0.97342 0.87612 0.92726 1.91536 1.71627 1.50194 1.97116 0.94933 0.88498 0.95761 0.92584 0.89657 0.89668 0.82633 0.83883 0.83745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 8.90 37.16 0.33 -2.68 16 2 C 0.06 1.45 2.74 -92.93 -0.25 1.20 16 3 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 4 C -0.52 -14.13 8.37 -34.44 -0.29 -14.42 16 5 H 0.08 2.16 6.76 -52.49 -0.35 1.80 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.18 11.32 55.43 0.63 -23.56 16 8 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 9 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 C 0.47 10.50 7.25 36.00 0.26 10.76 16 13 O -0.51 -12.74 15.21 -18.75 -0.29 -13.02 16 14 O -0.36 -6.66 8.59 -39.25 -0.34 -7.00 16 15 C 0.10 1.63 5.43 36.01 0.20 1.83 16 16 C -0.09 -1.19 5.88 -104.57 -0.62 -1.80 16 17 C -0.08 -0.88 9.38 -39.58 -0.37 -1.25 16 18 C -0.10 -0.87 10.04 -39.58 -0.40 -1.27 16 19 C -0.13 -1.17 10.02 -39.53 -0.40 -1.56 16 20 C 0.06 0.75 7.31 -39.36 -0.29 0.46 16 21 F -0.13 -1.59 17.18 2.25 0.04 -1.55 16 22 C 0.07 0.92 7.25 -39.37 -0.29 0.63 16 23 F -0.13 -1.80 16.72 2.25 0.04 -1.76 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.10 2.37 6.07 -51.93 -0.32 2.06 16 26 H 0.02 0.46 8.11 -51.93 -0.42 0.04 16 27 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.09 1.34 8.13 -51.93 -0.42 0.92 16 29 H 0.09 1.35 8.13 -51.93 -0.42 0.93 16 30 H 0.16 1.80 6.99 -52.49 -0.37 1.44 16 31 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 32 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 LS Contribution 292.68 15.07 4.41 4.41 Total: -1.00 -29.07 292.68 -5.86 -34.93 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -3.13 Total: -2.06 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -2.20 Total: -6.50 kcal Atomic # 7 Polarization: -24.18 SS G_CDS: 0.63 Total: -23.56 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.62 Total: -20.02 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.08 Total: -3.31 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.07 -5.86 -34.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118466284.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.286 kcal (2) G-P(sol) polarization free energy of solvation -29.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds