Wall clock time and date at job start Mon Mar 30 2020 01:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.20822 * 119.99840 * 240.00038 * 12 2 1 14 14 O 1.34228 * 120.00316 * 60.00271 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 C 1.50707 * 109.46995 * 179.97438 * 15 14 12 17 17 C 1.38258 * 119.99980 * 359.97438 * 16 15 14 18 18 C 1.38214 * 120.06819 * 180.02562 * 17 16 15 19 19 C 1.38253 * 120.07291 * 359.97438 * 18 17 16 20 20 C 1.38369 * 119.99888 * 359.97438 * 19 18 17 21 21 F 1.35104 * 120.03453 * 180.02562 * 20 19 18 22 22 C 1.38360 * 119.99984 * 179.72623 * 16 15 14 23 23 F 1.35109 * 120.03520 * 359.97165 * 22 16 15 24 24 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 26 26 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 29 29 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 30 30 H 1.08000 * 119.96431 * 0.02562 * 17 16 15 31 31 H 1.08006 * 119.96012 * 180.02562 * 18 17 16 32 32 H 1.07999 * 120.00330 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0323 -0.7103 -1.2305 13 8 2.7269 -1.6927 -1.1197 14 8 1.7081 -0.2516 -2.4496 15 6 2.2267 -0.9861 -3.5897 16 6 1.7618 -0.3294 -4.8640 17 6 0.9639 0.7984 -4.8093 18 6 0.5363 1.4015 -5.9771 19 6 0.9060 0.8786 -7.2024 20 6 1.7053 -0.2493 -7.2606 21 9 2.0674 -0.7605 -8.4576 22 6 2.1378 -0.8521 -6.0887 23 9 2.9221 -1.9509 -6.1430 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 0.7089 1.1611 3.4845 28 1 3.3163 -0.9858 -3.5570 29 1 1.8625 -2.0129 -3.5567 30 1 0.6745 1.2085 -3.8530 31 1 -0.0866 2.2827 -5.9323 32 1 0.5716 1.3511 -8.1142 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118466284.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:41 Heat of formation + Delta-G solvation = -173.748315 kcal Electronic energy + Delta-G solvation = -19874.070695 eV Core-core repulsion = 16242.048877 eV Total energy + Delta-G solvation = -3632.021817 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.59200 -49.67463 -41.50340 -39.97469 -37.54671 -35.92958 -33.37557 -32.48003 -31.33872 -28.06300 -27.25509 -25.05541 -23.85483 -23.00368 -21.57483 -19.14073 -18.70802 -18.33490 -18.10462 -17.73445 -17.57359 -17.34314 -17.13865 -16.24395 -16.10379 -15.73269 -15.50028 -15.06407 -14.83520 -14.55935 -14.09719 -13.73357 -13.47572 -13.07857 -13.00754 -12.81152 -12.76315 -12.57086 -12.30293 -12.27565 -12.04827 -11.91793 -11.12103 -11.08962 -10.52565 -9.97282 -9.81742 -8.19868 -6.32607 -0.15930 -0.10163 1.39145 1.43469 1.44993 1.51372 1.66960 2.32074 2.43257 2.73025 3.10633 3.17184 3.38255 3.73864 3.81772 4.05628 4.06330 4.18503 4.26670 4.66252 4.71418 4.78796 4.91260 4.96754 5.00734 5.17906 5.19282 5.40224 5.47798 5.69914 5.70710 5.90284 6.11889 6.72942 6.98066 7.36136 8.86100 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.042819 B = 0.003816 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.756241 B = 7336.624379 C = 7897.875735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.053 3.947 3 H 0.058 0.942 4 C -0.543 4.543 5 H 0.054 0.946 6 C 0.026 3.974 7 N -0.906 5.906 8 Si 0.960 3.040 9 H -0.273 1.273 10 H -0.275 1.275 11 H -0.275 1.275 12 C 0.475 3.525 13 O -0.542 6.542 14 O -0.348 6.348 15 C 0.103 3.897 16 C -0.105 4.105 17 C -0.084 4.084 18 C -0.080 4.080 19 C -0.111 4.111 20 C 0.055 3.945 21 F -0.136 7.136 22 C 0.050 3.950 23 F -0.141 7.141 24 H 0.026 0.974 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.269 0.731 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.154 0.846 31 H 0.183 0.817 32 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.343 3.957 -18.316 19.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.034 3.966 3 H 0.075 0.925 4 C -0.581 4.581 5 H 0.072 0.928 6 C -0.174 4.174 7 N -0.544 5.544 8 Si 0.785 3.215 9 H -0.198 1.198 10 H -0.200 1.200 11 H -0.201 1.201 12 C 0.320 3.680 13 O -0.431 6.431 14 O -0.265 6.265 15 C 0.030 3.970 16 C -0.106 4.106 17 C -0.102 4.102 18 C -0.097 4.097 19 C -0.129 4.129 20 C 0.035 3.965 21 F -0.115 7.115 22 C 0.030 3.970 23 F -0.120 7.120 24 H 0.046 0.954 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.172 0.828 31 H 0.201 0.799 32 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -3.168 3.710 -18.231 18.873 hybrid contribution 0.977 -1.267 0.660 1.730 sum -2.191 2.444 -17.571 17.875 Atomic orbital electron populations 1.21578 0.93989 0.99937 1.02383 1.18704 0.96127 0.96279 0.85499 0.92476 1.21235 1.32826 1.13378 0.90638 0.92759 1.25569 0.94865 0.95622 1.01352 1.69934 1.36448 1.23192 1.24829 0.85581 0.78689 0.78700 0.78515 1.19805 1.20046 1.20085 1.24986 0.75964 0.82582 0.84446 1.90504 1.37471 1.27893 1.87267 1.86485 1.69975 1.55313 1.14700 1.21462 0.99046 0.94987 0.81550 1.19476 1.01548 0.98841 0.90740 1.21333 0.94558 0.92789 1.01531 1.21573 0.98193 1.00461 0.89510 1.21555 0.96347 0.93197 1.01851 1.17792 1.02521 0.97396 0.78748 1.91510 1.90503 1.86767 1.42706 1.17543 0.98183 0.87830 0.93432 1.91490 1.72221 1.51062 1.97217 0.95441 0.90358 0.92524 0.92199 0.90245 0.90237 0.82841 0.79926 0.80138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.90 71.98 0.64 -4.75 16 2 C 0.05 2.61 2.74 -12.29 -0.03 2.57 16 3 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 4 C -0.54 -30.29 8.37 25.60 0.21 -30.08 16 5 H 0.05 3.20 6.76 -2.91 -0.02 3.18 16 6 C 0.03 1.42 5.30 84.66 0.45 1.87 16 7 N -0.91 -48.91 11.32 21.45 0.24 -48.66 16 8 Si 0.96 43.24 29.54 68.60 2.03 45.26 16 9 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 C 0.47 21.66 7.25 71.24 0.52 22.18 16 13 O -0.54 -27.69 15.21 21.98 0.33 -27.36 16 14 O -0.35 -12.74 8.59 -51.39 -0.44 -13.18 16 15 C 0.10 3.31 5.43 71.24 0.39 3.70 16 16 C -0.10 -2.72 5.88 -19.83 -0.12 -2.84 16 17 C -0.08 -1.73 9.38 22.27 0.21 -1.52 16 18 C -0.08 -1.06 10.04 22.27 0.22 -0.84 16 19 C -0.11 -1.55 10.02 22.30 0.22 -1.32 16 20 C 0.06 1.18 7.31 22.41 0.16 1.34 16 21 F -0.14 -3.12 17.18 44.97 0.77 -2.35 16 22 C 0.05 1.29 7.25 22.41 0.16 1.45 16 23 F -0.14 -4.13 16.72 44.97 0.75 -3.37 16 24 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.08 3.80 6.07 -2.39 -0.01 3.79 16 26 H 0.06 2.10 8.11 -2.38 -0.02 2.08 16 27 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 28 H 0.08 2.60 8.13 -2.39 -0.02 2.58 16 29 H 0.08 2.61 8.13 -2.39 -0.02 2.59 16 30 H 0.15 3.22 6.99 -2.91 -0.02 3.20 16 31 H 0.18 1.06 8.06 -2.91 -0.02 1.03 16 32 H 0.18 1.26 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -63.30 292.68 7.88 -55.42 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: 1.15 Total: 2.48 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 3.04 Total: -8.24 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.24 Total: -48.66 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -0.11 Total: -40.54 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 1.52 Total: -5.72 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -63.30 7.88 -55.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118466284.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.328 kcal (2) G-P(sol) polarization free energy of solvation -63.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds