Wall clock time and date at job start Mon Mar 30 2020 01:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46507 * 119.99758 * 2 1 4 4 C 1.50701 * 109.47124 * 270.00050 * 3 2 1 5 5 C 1.35351 * 126.74701 * 95.00142 * 4 3 2 6 6 N 1.35322 * 106.16806 * 180.02562 * 5 4 3 7 7 C 1.46502 * 125.86299 * 180.26356 * 6 5 4 8 8 N 1.28714 * 108.26464 * 0.02562 * 6 5 4 9 9 N 1.28629 * 110.17964 * 359.97438 * 8 6 5 10 10 C 1.34770 * 120.00321 * 180.02562 * 2 1 3 11 11 O 1.21276 * 120.00261 * 179.97438 * 10 2 1 12 12 C 1.50705 * 119.99756 * 0.02562 * 10 2 1 13 13 S 1.80998 * 109.47054 * 179.97438 * 12 10 2 14 14 C 1.76193 * 100.00095 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00246 * 359.97438 * 14 13 12 16 16 C 1.38801 * 120.00370 * 180.02562 * 14 13 12 17 17 N 1.31631 * 119.99481 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00357 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47116 * 89.99806 * 18 16 14 20 20 H 1.48502 * 109.47111 * 209.99767 * 18 16 14 21 21 H 1.48500 * 109.47040 * 329.99486 * 18 16 14 22 22 H 1.09001 * 109.47154 * 89.99570 * 1 2 3 23 23 H 1.08997 * 109.47031 * 209.99937 * 1 2 3 24 24 H 1.09003 * 109.47362 * 330.00205 * 1 2 3 25 25 H 1.08998 * 109.46936 * 149.99886 * 3 2 1 26 26 H 1.08998 * 109.46815 * 30.00505 * 3 2 1 27 27 H 1.07991 * 126.91591 * 0.05646 * 5 4 3 28 28 H 1.08997 * 109.47250 * 269.71379 * 7 6 5 29 29 H 1.09003 * 109.47080 * 29.71873 * 7 6 5 30 30 H 1.09006 * 109.46804 * 149.71734 * 7 6 5 31 31 H 1.08994 * 109.46659 * 299.99858 * 12 10 2 32 32 H 1.09003 * 109.47086 * 59.99988 * 12 10 2 33 33 H 0.97002 * 119.99858 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 6 1.6924 2.5550 -2.1528 6 7 2.2941 2.6495 -3.3612 7 6 1.8350 3.4670 -4.4869 8 7 3.3417 1.9018 -3.3499 9 7 3.4621 1.3241 -2.2069 10 6 2.1389 -1.1671 -0.0005 11 8 3.3517 -1.1671 -0.0010 12 6 1.3854 -2.4723 -0.0017 13 16 2.5616 -3.8479 -0.0029 14 6 1.4416 -5.2081 -0.0034 15 1 0.3763 -5.0305 -0.0025 16 6 1.9284 -6.5080 -0.0038 17 7 3.2267 -6.7245 -0.0043 18 14 0.7409 -7.9500 -0.0050 19 1 0.4268 -8.3315 -1.4054 20 1 1.3620 -9.1033 0.6947 21 1 -0.5100 -7.5618 0.6948 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 3.1499 1.1385 0.5138 26 1 1.6084 2.0284 0.5139 27 1 0.7908 3.0579 -1.8360 28 1 1.1613 2.8801 -5.1112 29 1 1.3088 4.3435 -4.1087 30 1 2.6934 3.7856 -5.0784 31 1 0.7585 -2.5305 0.8880 32 1 0.7591 -2.5294 -0.8920 33 1 3.5669 -7.6329 -0.0050 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118788316.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:24 Heat of formation + Delta-G solvation = 74.755433 kcal Electronic energy + Delta-G solvation = -17899.383970 eV Core-core repulsion = 14896.563973 eV Total energy + Delta-G solvation = -3002.819997 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.28661 -39.26452 -35.57386 -34.60659 -32.37208 -31.96593 -29.47577 -28.23657 -27.23042 -25.67011 -25.22833 -22.16460 -21.53556 -19.20514 -17.59304 -17.41519 -16.80743 -16.38438 -15.70063 -15.60478 -14.82303 -14.75503 -14.01705 -13.92614 -13.48742 -13.33686 -12.92669 -12.88154 -12.57611 -12.42355 -12.16006 -11.73273 -11.58093 -11.02267 -10.96696 -10.75258 -10.69000 -10.16517 -9.75455 -9.52263 -9.08789 -9.01196 -8.55604 -8.13896 -6.42473 -6.15648 -3.85534 1.46844 2.21779 2.40414 3.14504 3.19774 3.25883 3.31637 3.35994 3.73425 4.13802 4.25713 4.35378 4.62038 4.71289 4.81313 4.90159 5.08733 5.13680 5.19009 5.27241 5.44543 5.60068 5.66717 5.71018 5.88927 5.98138 6.06282 6.19757 6.43070 6.66741 7.59795 7.64833 8.40582 8.51655 8.69058 9.29136 10.91742 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.031688 B = 0.003893 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.407021 B = 7190.937531 C = 7307.396290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.623 5.623 3 C 0.203 3.797 4 C -0.034 4.034 5 C -0.046 4.046 6 N -0.300 5.300 7 C 0.083 3.917 8 N -0.089 5.089 9 N -0.235 5.235 10 C 0.531 3.469 11 O -0.497 6.497 12 C -0.148 4.148 13 S -0.059 6.059 14 C -0.535 4.535 15 H 0.072 0.928 16 C 0.073 3.927 17 N -0.867 5.867 18 Si 0.918 3.082 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 H 0.049 0.951 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.102 0.898 26 H 0.093 0.907 27 H 0.188 0.812 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.028 22.756 -4.089 25.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.360 5.360 3 C 0.077 3.923 4 C -0.173 4.173 5 C -0.198 4.198 6 N -0.093 5.093 7 C -0.059 4.059 8 N -0.069 5.069 9 N -0.102 5.102 10 C 0.318 3.682 11 O -0.368 6.368 12 C -0.299 4.299 13 S 0.167 5.833 14 C -0.683 4.683 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.502 5.502 18 Si 0.744 3.256 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.197 1.197 22 H 0.067 0.933 23 H 0.095 0.905 24 H 0.087 0.913 25 H 0.120 0.880 26 H 0.111 0.889 27 H 0.205 0.795 28 H 0.108 0.892 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.865 22.115 -4.926 23.674 hybrid contribution -3.387 -0.376 0.244 3.416 sum -10.251 21.739 -4.682 24.486 Atomic orbital electron populations 1.21755 0.79735 1.03168 1.01463 1.47889 1.06629 1.05262 1.76234 1.19503 0.99220 0.85287 0.88265 1.22561 0.94691 1.00091 1.00006 1.23351 1.03148 1.06603 0.86712 1.47313 1.18424 1.31589 1.12001 1.22223 1.02258 0.94468 0.86924 1.78418 1.04747 1.06062 1.17684 1.75271 1.20698 1.17483 0.96781 1.20344 0.88091 0.84426 0.75323 1.90736 1.13476 1.86462 1.46161 1.23547 1.04505 0.97348 1.04476 1.85460 1.07941 0.93215 1.96653 1.22866 0.94313 0.92318 1.58849 0.91031 1.24990 0.95641 0.98340 0.94632 1.70028 1.11715 1.21590 1.46880 0.86180 0.80281 0.80794 0.78300 1.20328 1.20767 1.19721 0.93275 0.90482 0.91324 0.87964 0.88919 0.79460 0.89203 0.88485 0.88127 0.89304 0.89591 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 10.28 59.85 0.62 1.44 16 2 N -0.62 -9.08 2.86 -182.95 -0.52 -9.60 16 3 C 0.20 2.55 6.01 -5.19 -0.03 2.51 16 4 C -0.03 -0.46 6.83 -82.78 -0.57 -1.03 16 5 C -0.05 -0.45 11.55 -17.04 -0.20 -0.65 16 6 N -0.30 -3.18 3.74 -68.05 -0.25 -3.44 16 7 C 0.08 0.38 11.39 59.85 0.68 1.07 16 8 N -0.09 -1.40 13.16 60.35 0.79 -0.61 16 9 N -0.24 -4.26 12.41 33.29 0.41 -3.84 16 10 C 0.53 10.70 7.69 -10.99 -0.08 10.62 16 11 O -0.50 -12.11 15.44 5.56 0.09 -12.02 16 12 C -0.15 -3.15 4.71 36.01 0.17 -2.99 16 13 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 14 C -0.54 -15.63 9.50 30.94 0.29 -15.33 16 15 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 16 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 17 N -0.87 -26.76 13.22 55.49 0.73 -26.03 16 18 Si 0.92 21.79 29.55 -169.99 -5.02 16.76 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.08 0.80 6.44 -51.93 -0.33 0.47 16 24 H 0.07 0.45 7.89 -51.93 -0.41 0.04 16 25 H 0.10 1.51 7.42 -51.93 -0.39 1.12 16 26 H 0.09 0.72 7.89 -51.93 -0.41 0.31 16 27 H 0.19 0.90 8.06 -52.49 -0.42 0.48 16 28 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 1.71 7.40 -51.92 -0.38 1.33 16 32 H 0.09 1.73 8.11 -51.91 -0.42 1.31 16 33 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 307.63 15.07 4.64 4.64 Total: -1.00 -40.25 307.63 -4.56 -44.81 By element: Atomic # 1 Polarization: -0.46 SS G_CDS: -4.00 Total: -4.46 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 0.79 Total: -2.31 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 1.16 Total: -43.52 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.09 Total: -12.02 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -40.25 -4.56 -44.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118788316.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.566 kcal (2) G-P(sol) polarization free energy of solvation -40.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds