Wall clock time and date at job start Mon Mar 30 2020 01:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46507 * 119.99758 * 2 1 4 4 C 1.50701 * 109.47124 * 270.00050 * 3 2 1 5 5 C 1.35351 * 126.74701 * 95.00142 * 4 3 2 6 6 N 1.35322 * 106.16806 * 180.02562 * 5 4 3 7 7 C 1.46502 * 125.86299 * 180.26356 * 6 5 4 8 8 N 1.28714 * 108.26464 * 0.02562 * 6 5 4 9 9 N 1.28629 * 110.17964 * 359.97438 * 8 6 5 10 10 C 1.34770 * 120.00321 * 180.02562 * 2 1 3 11 11 O 1.21276 * 120.00261 * 179.97438 * 10 2 1 12 12 C 1.50705 * 119.99756 * 0.02562 * 10 2 1 13 13 S 1.80998 * 109.47054 * 179.97438 * 12 10 2 14 14 C 1.76193 * 100.00095 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00246 * 359.97438 * 14 13 12 16 16 C 1.38801 * 120.00370 * 180.02562 * 14 13 12 17 17 N 1.31631 * 119.99481 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00357 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47116 * 89.99806 * 18 16 14 20 20 H 1.48502 * 109.47111 * 209.99767 * 18 16 14 21 21 H 1.48500 * 109.47040 * 329.99486 * 18 16 14 22 22 H 1.09001 * 109.47154 * 89.99570 * 1 2 3 23 23 H 1.08997 * 109.47031 * 209.99937 * 1 2 3 24 24 H 1.09003 * 109.47362 * 330.00205 * 1 2 3 25 25 H 1.08998 * 109.46936 * 149.99886 * 3 2 1 26 26 H 1.08998 * 109.46815 * 30.00505 * 3 2 1 27 27 H 1.07991 * 126.91591 * 0.05646 * 5 4 3 28 28 H 1.08997 * 109.47250 * 269.71379 * 7 6 5 29 29 H 1.09003 * 109.47080 * 29.71873 * 7 6 5 30 30 H 1.09006 * 109.46804 * 149.71734 * 7 6 5 31 31 H 1.08994 * 109.46659 * 299.99858 * 12 10 2 32 32 H 1.09003 * 109.47086 * 59.99988 * 12 10 2 33 33 H 0.97002 * 119.99858 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 6 1.6924 2.5550 -2.1528 6 7 2.2941 2.6495 -3.3612 7 6 1.8350 3.4670 -4.4869 8 7 3.3417 1.9018 -3.3499 9 7 3.4621 1.3241 -2.2069 10 6 2.1389 -1.1671 -0.0005 11 8 3.3517 -1.1671 -0.0010 12 6 1.3854 -2.4723 -0.0017 13 16 2.5616 -3.8479 -0.0029 14 6 1.4416 -5.2081 -0.0034 15 1 0.3763 -5.0305 -0.0025 16 6 1.9284 -6.5080 -0.0038 17 7 3.2267 -6.7245 -0.0043 18 14 0.7409 -7.9500 -0.0050 19 1 0.4268 -8.3315 -1.4054 20 1 1.3620 -9.1033 0.6947 21 1 -0.5100 -7.5618 0.6948 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 3.1499 1.1385 0.5138 26 1 1.6084 2.0284 0.5139 27 1 0.7908 3.0579 -1.8360 28 1 1.1613 2.8801 -5.1112 29 1 1.3088 4.3435 -4.1087 30 1 2.6934 3.7856 -5.0784 31 1 0.7585 -2.5305 0.8880 32 1 0.7591 -2.5294 -0.8920 33 1 3.5669 -7.6329 -0.0050 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118788316.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:24 Heat of formation + Delta-G solvation = 42.986378 kcal Electronic energy + Delta-G solvation = -17900.761580 eV Core-core repulsion = 14896.563973 eV Total energy + Delta-G solvation = -3004.197607 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.18747 -40.68402 -36.81644 -35.48050 -34.58505 -33.01075 -30.88324 -28.94604 -28.16044 -27.68844 -26.55061 -23.00267 -22.52591 -20.65082 -19.52398 -18.19048 -17.98665 -17.54284 -16.95646 -16.87257 -16.76755 -15.84745 -15.70573 -15.06569 -14.55260 -14.38070 -14.03400 -13.98264 -13.58493 -13.45761 -13.33366 -13.16377 -12.98708 -12.88429 -12.60086 -12.49044 -11.74538 -11.63159 -11.14218 -11.07056 -10.86487 -10.25280 -10.21263 -9.73408 -8.67778 -8.33940 -6.13107 0.67063 1.20805 1.36486 1.42751 1.51174 1.60107 1.63577 1.71532 2.27234 2.37282 2.99737 3.29005 3.42210 3.70382 3.88802 4.06603 4.18124 4.23455 4.34749 4.38276 4.47090 4.49321 4.64146 4.70312 4.80480 4.96079 5.00421 5.16231 5.40940 5.61381 5.74284 6.19690 6.32237 7.06321 7.23644 7.57317 8.75578 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.031688 B = 0.003893 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.407021 B = 7190.937531 C = 7307.396290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.608 5.608 3 C 0.202 3.798 4 C -0.065 4.065 5 C -0.010 4.010 6 N -0.291 5.291 7 C 0.070 3.930 8 N -0.138 5.138 9 N -0.307 5.307 10 C 0.525 3.475 11 O -0.555 6.555 12 C -0.119 4.119 13 S -0.160 6.160 14 C -0.545 4.545 15 H 0.084 0.916 16 C 0.011 3.989 17 N -0.913 5.913 18 Si 1.002 2.998 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.255 1.255 22 H 0.059 0.941 23 H 0.072 0.928 24 H 0.119 0.881 25 H 0.067 0.933 26 H 0.155 0.845 27 H 0.249 0.751 28 H 0.103 0.897 29 H 0.140 0.860 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.452 24.892 -4.126 29.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.342 5.342 3 C 0.078 3.922 4 C -0.207 4.207 5 C -0.163 4.163 6 N -0.085 5.085 7 C -0.069 4.069 8 N -0.117 5.117 9 N -0.173 5.173 10 C 0.312 3.688 11 O -0.432 6.432 12 C -0.270 4.270 13 S 0.067 5.933 14 C -0.693 4.693 15 H 0.102 0.898 16 C -0.194 4.194 17 N -0.549 5.549 18 Si 0.823 3.177 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.178 1.178 22 H 0.078 0.922 23 H 0.091 0.909 24 H 0.137 0.863 25 H 0.085 0.915 26 H 0.172 0.828 27 H 0.266 0.734 28 H 0.121 0.879 29 H 0.158 0.842 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.117 0.883 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.326 24.311 -4.999 27.281 hybrid contribution -2.116 -0.802 0.209 2.273 sum -13.442 23.509 -4.790 27.501 Atomic orbital electron populations 1.22142 0.76352 1.05556 1.02881 1.47869 1.08623 1.04138 1.73611 1.19789 0.98724 0.85350 0.88359 1.22874 0.95193 1.02004 1.00582 1.24122 1.03130 1.03944 0.85101 1.47815 1.16922 1.30163 1.13554 1.22747 1.02862 0.95357 0.85937 1.78306 1.07539 1.08311 1.17513 1.75198 1.23753 1.19888 0.98472 1.20217 0.87407 0.85738 0.75472 1.90718 1.15800 1.87353 1.49282 1.23350 1.02517 0.95087 1.06065 1.85709 1.12996 0.97592 1.97009 1.23194 0.94572 0.92586 1.58929 0.89829 1.26196 0.97668 1.01799 0.93691 1.70210 1.14270 1.22454 1.47998 0.84908 0.77871 0.76120 0.78770 1.19394 1.20233 1.17841 0.92219 0.90887 0.86291 0.91479 0.82753 0.73449 0.87858 0.84160 0.88083 0.86951 0.88327 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.13 10.28 127.77 1.31 2.44 16 2 N -0.61 -16.53 2.86 -851.13 -2.43 -18.97 16 3 C 0.20 4.69 6.01 85.63 0.51 5.21 16 4 C -0.07 -1.72 6.83 41.60 0.28 -1.43 16 5 C -0.01 -0.15 11.55 83.49 0.96 0.81 16 6 N -0.29 -5.49 3.74 -369.22 -1.38 -6.87 16 7 C 0.07 0.41 11.39 127.77 1.46 1.86 16 8 N -0.14 -4.39 13.16 37.02 0.49 -3.90 16 9 N -0.31 -11.53 12.41 -48.60 -0.60 -12.14 16 10 C 0.52 21.49 7.69 87.66 0.67 22.16 16 11 O -0.55 -28.73 15.44 -3.02 -0.05 -28.77 16 12 C -0.12 -5.09 4.71 71.24 0.34 -4.75 16 13 S -0.16 -9.46 20.57 -56.49 -1.16 -10.62 16 14 C -0.55 -32.25 9.50 67.95 0.65 -31.61 16 15 H 0.08 4.55 7.80 -2.91 -0.02 4.53 16 16 C 0.01 0.64 5.49 84.86 0.47 1.11 16 17 N -0.91 -58.08 13.22 21.65 0.29 -57.79 16 18 Si 1.00 44.63 29.55 68.60 2.03 46.66 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 21 H -0.25 -10.51 7.11 99.48 0.71 -9.80 16 22 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.07 1.24 6.44 -2.39 -0.02 1.22 16 24 H 0.12 0.74 7.89 -2.39 -0.02 0.72 16 25 H 0.07 2.05 7.42 -2.39 -0.02 2.03 16 26 H 0.15 1.59 7.89 -2.39 -0.02 1.57 16 27 H 0.25 0.45 8.06 -2.92 -0.02 0.43 16 28 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.14 -0.37 8.14 -2.39 -0.02 -0.39 16 30 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.11 4.22 7.40 -2.40 -0.02 4.20 16 32 H 0.10 3.92 8.11 -2.39 -0.02 3.90 16 33 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -98.24 307.63 4.95 -93.30 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: 1.12 Total: 3.31 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 6.65 Total: -4.20 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -3.64 Total: -99.67 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.05 Total: -28.77 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: -9.46 SS G_CDS: -1.16 Total: -10.62 kcal Total: -98.24 4.95 -93.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118788316.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.281 kcal (2) G-P(sol) polarization free energy of solvation -98.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds