Wall clock time and date at job start Mon Mar 30 2020 00:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46504 * 193.29776 * 3 2 1 5 5 C 1.37097 * 120.00294 * 264.22872 * 4 3 2 6 6 H 1.07996 * 120.00419 * 197.72402 * 5 4 3 7 7 C 1.38957 * 119.99677 * 17.72885 * 5 4 3 8 8 N 1.31415 * 119.99955 * 21.39466 * 7 5 4 9 9 Si 1.86794 * 119.99866 * 201.39635 * 7 5 4 10 10 H 1.48498 * 109.47457 * 89.99761 * 9 7 5 11 11 H 1.48502 * 109.47082 * 209.99787 * 9 7 5 12 12 H 1.48501 * 109.47107 * 329.99751 * 9 7 5 13 13 C 1.34773 * 119.99823 * 84.23623 * 4 3 2 14 14 O 1.21295 * 120.00387 * 179.97438 * 13 4 3 15 15 C 1.50702 * 120.00228 * 359.97438 * 13 4 3 16 16 C 1.50700 * 109.47360 * 180.02562 * 15 13 4 17 17 C 1.38702 * 120.30656 * 269.97748 * 16 15 13 18 18 C 1.38496 * 118.50567 * 180.02562 * 17 16 15 19 19 C 1.39458 * 119.04799 * 0.02562 * 18 17 16 20 20 C 1.43204 * 119.73629 * 180.02562 * 19 18 17 21 21 N 9.85919 * 104.67024 * 245.92302 * 2 1 3 22 22 N 1.32786 * 120.53067 * 359.97438 * 19 18 17 23 23 C 1.31592 * 121.62016 * 359.97438 * 22 19 18 24 24 H 1.08998 * 109.47304 * 73.30445 * 3 2 1 25 25 H 1.08998 * 109.47582 * 313.30002 * 3 2 1 26 26 H 0.97001 * 119.99882 * 180.02562 * 8 7 5 27 27 H 1.09000 * 109.47156 * 59.99872 * 15 13 4 28 28 H 1.09001 * 109.46931 * 300.00069 * 15 13 4 29 29 H 1.07994 * 120.74937 * 0.04409 * 17 16 15 30 30 H 1.07997 * 120.47569 * 180.02562 * 18 17 16 31 31 H 1.08003 * 119.54807 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0956 1.3451 0.3177 5 6 3.4362 2.2073 -0.6923 6 1 4.0521 3.0692 -0.4820 7 6 2.9889 1.9723 -1.9868 8 7 1.9359 1.2128 -2.1903 9 14 3.8844 2.7358 -3.4374 10 1 4.9496 1.8121 -3.9035 11 1 2.9215 2.9782 -4.5416 12 1 4.4940 4.0241 -3.0205 13 6 3.2094 1.7344 1.6030 14 8 3.6136 2.8473 1.8662 15 6 2.8346 0.7869 2.7133 16 6 3.0517 1.4608 4.0436 17 6 4.2758 1.3598 4.6879 18 6 4.4342 1.9935 5.9092 19 6 3.3628 2.7069 6.4459 20 6 3.5106 3.3682 7.7075 21 7 3.6329 3.8911 8.7080 22 7 2.2071 2.7786 5.7961 23 6 2.0310 2.1866 4.6341 24 1 2.9715 -0.2944 -0.9843 25 1 2.9717 -0.7039 0.7479 26 1 1.6239 1.0485 -3.0940 27 1 3.4552 -0.1072 2.6530 28 1 1.7855 0.5082 2.6145 29 1 5.0873 0.7999 4.2471 30 1 5.3740 1.9361 6.4383 31 1 1.0769 2.2672 4.1344 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118816335.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:13 Heat of formation + Delta-G solvation = 54.464411 kcal Electronic energy + Delta-G solvation = -19062.967886 eV Core-core repulsion = 15923.824052 eV Total energy + Delta-G solvation = -3139.143833 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.52262 -40.33714 -37.78625 -37.46532 -36.12076 -34.58689 -33.64618 -33.04571 -29.80186 -28.93789 -26.57620 -24.91244 -24.15211 -20.89311 -20.41193 -19.68004 -18.18463 -17.94619 -17.66685 -16.61188 -16.33020 -15.82268 -15.69755 -15.59906 -15.39066 -14.64129 -14.48987 -14.28297 -14.20101 -13.88060 -13.79935 -13.74538 -13.35722 -13.14737 -12.97679 -12.90378 -12.54186 -12.25158 -12.11859 -12.00539 -11.05161 -10.86130 -10.64604 -10.44550 -9.92307 -9.85317 -8.35737 -5.90180 -0.42077 0.29227 1.39867 1.43453 1.52742 1.60927 1.74036 1.90540 2.14436 2.34647 2.41370 2.48048 2.85195 3.06228 3.29319 3.65062 3.70017 3.73303 3.94859 4.08346 4.13628 4.20182 4.58936 4.68318 4.77459 4.82618 4.99558 5.02436 5.28967 5.54719 5.58351 6.10335 6.22353 6.45610 6.75315 7.10783 7.19694 7.43516 7.99654 8.67392 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.028791 B = 0.004456 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.305615 B = 6281.908547 C = 6822.318893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C 0.257 3.743 3 C 0.219 3.781 4 N -0.455 5.455 5 C -0.336 4.336 6 H 0.081 0.919 7 C 0.008 3.992 8 N -0.892 5.892 9 Si 0.979 3.021 10 H -0.259 1.259 11 H -0.291 1.291 12 H -0.280 1.280 13 C 0.455 3.545 14 O -0.612 6.612 15 C -0.093 4.093 16 C -0.076 4.076 17 C -0.056 4.056 18 C -0.100 4.100 19 C 0.154 3.846 20 C 0.292 3.708 21 N -0.434 5.434 22 N -0.479 5.479 23 C 0.104 3.896 24 H 0.121 0.879 25 H 0.151 0.849 26 H 0.273 0.727 27 H 0.151 0.849 28 H 0.105 0.895 29 H 0.182 0.818 30 H 0.179 0.821 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.341 -8.846 7.485 13.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.192 5.192 2 C -0.061 4.061 3 C 0.093 3.907 4 N -0.175 5.175 5 C -0.464 4.464 6 H 0.099 0.901 7 C -0.194 4.194 8 N -0.530 5.530 9 Si 0.805 3.195 10 H -0.184 1.184 11 H -0.218 1.218 12 H -0.205 1.205 13 C 0.245 3.755 14 O -0.497 6.497 15 C -0.133 4.133 16 C -0.080 4.080 17 C -0.082 4.082 18 C -0.122 4.122 19 C 0.017 3.983 20 C -0.024 4.024 21 N -0.111 5.111 22 N -0.189 5.189 23 C -0.056 4.056 24 H 0.139 0.861 25 H 0.168 0.832 26 H 0.083 0.917 27 H 0.169 0.831 28 H 0.123 0.877 29 H 0.199 0.801 30 H 0.197 0.803 31 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.263 -7.074 9.362 12.860 hybrid contribution 0.683 0.333 -1.943 2.087 sum 5.946 -6.741 7.418 11.655 Atomic orbital electron populations 1.80938 1.14990 1.10155 1.13132 1.29859 0.95900 0.90937 0.89361 1.19173 0.79854 0.85501 1.06214 1.43790 1.56753 1.12251 1.04696 1.19569 1.30627 1.09088 0.87074 0.90077 1.25764 0.95157 0.97906 1.00620 1.69932 1.20278 1.39700 1.23128 0.85127 0.78213 0.78701 0.77475 1.18350 1.21762 1.20548 1.20831 0.82459 0.88339 0.83830 1.90576 1.51581 1.24025 1.83520 1.20735 1.05551 0.99065 0.87962 1.20787 0.95084 0.96440 0.95648 1.21874 0.96745 0.96654 0.92907 1.22287 0.99160 0.94612 0.96112 1.16498 0.92453 0.99572 0.89807 1.25175 0.92587 0.92612 0.92033 1.81203 1.08587 1.09285 1.12033 1.67421 1.23412 1.18689 1.09358 1.22708 1.00266 0.92588 0.89993 0.86086 0.83220 0.91739 0.83111 0.87692 0.80066 0.80333 0.82090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -21.79 18.54 20.01 0.37 -21.42 16 2 C 0.26 9.69 12.95 89.44 1.16 10.85 16 3 C 0.22 6.88 4.91 84.57 0.42 7.29 16 4 N -0.45 -18.07 2.60 -645.41 -1.68 -19.75 16 5 C -0.34 -15.95 9.32 84.04 0.78 -15.17 16 6 H 0.08 4.24 7.39 -2.91 -0.02 4.22 16 7 C 0.01 0.36 4.87 84.93 0.41 0.77 16 8 N -0.89 -41.64 9.48 21.67 0.21 -41.43 16 9 Si 0.98 37.95 29.60 68.60 2.03 39.98 16 10 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 11 H -0.29 -11.53 7.11 99.48 0.71 -10.82 16 12 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 13 C 0.46 16.85 7.56 87.66 0.66 17.52 16 14 O -0.61 -28.40 15.68 -3.08 -0.05 -28.45 16 15 C -0.09 -2.16 4.46 29.10 0.13 -2.03 16 16 C -0.08 -1.81 4.40 -19.70 -0.09 -1.89 16 17 C -0.06 -1.02 9.85 22.44 0.22 -0.80 16 18 C -0.10 -1.77 9.80 22.63 0.22 -1.55 16 19 C 0.15 3.79 6.58 40.54 0.27 4.06 16 20 C 0.29 7.67 15.53 88.34 1.37 9.04 16 21 N -0.43 -12.65 18.53 19.00 0.35 -12.30 16 22 N -0.48 -13.83 10.28 -189.21 -1.94 -15.78 16 23 C 0.10 2.84 10.85 84.78 0.92 3.76 16 24 H 0.12 4.07 6.46 -2.39 -0.02 4.05 16 25 H 0.15 2.71 6.68 -2.39 -0.02 2.69 16 26 H 0.27 12.47 8.31 -92.71 -0.77 11.70 16 27 H 0.15 1.99 7.37 -2.39 -0.02 1.97 16 28 H 0.10 2.35 7.46 -2.39 -0.02 2.33 16 29 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 30 H 0.18 1.85 8.06 -2.91 -0.02 1.83 16 31 H 0.16 4.25 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -69.29 294.94 6.96 -62.33 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 1.19 Total: 4.99 kcal Atomic # 6 Polarization: 25.37 SS G_CDS: 6.48 Total: 31.85 kcal Atomic # 7 Polarization: -107.99 SS G_CDS: -2.69 Total: -110.68 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.05 Total: -28.45 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Total: -69.29 6.96 -62.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118816335.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.793 kcal (2) G-P(sol) polarization free energy of solvation -69.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds