Wall clock time and date at job start Mon Mar 30 2020 01:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 N 1.46499 * 109.47260 * 180.27562 * 9 7 2 11 11 C 1.33796 * 124.17629 * 90.02810 * 10 9 7 12 12 O 1.21541 * 123.76746 * 359.96412 * 11 10 9 13 13 N 1.34526 * 112.46181 * 179.97438 * 11 10 9 14 14 C 1.47313 * 106.61781 * 0.02562 * 13 11 10 15 15 H 1.08998 * 110.60279 * 118.52734 * 14 13 11 16 16 C 1.52997 * 110.59686 * 241.32118 * 14 13 11 17 17 C 1.52997 * 109.47405 * 293.54340 * 16 14 13 18 18 O 1.43754 * 109.63085 * 294.37061 * 17 16 14 19 19 C 1.44784 * 104.81463 * 215.80461 * 18 17 16 20 20 C 1.54913 * 101.72192 * 36.09734 * 19 18 17 21 21 O 1.43361 * 109.63608 * 175.00246 * 17 16 14 22 22 C 1.34763 * 124.18421 * 269.73220 * 10 9 7 23 23 O 1.21236 * 127.15593 * 359.97438 * 22 10 9 24 24 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 26 26 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 27 27 H 0.96991 * 126.69215 * 180.02562 * 13 11 10 28 28 H 1.09003 * 109.47360 * 53.54819 * 16 14 13 29 29 H 1.09008 * 109.47073 * 173.54119 * 16 14 13 30 30 H 1.09009 * 109.62667 * 54.60331 * 17 16 14 31 31 H 1.09004 * 110.97564 * 277.99169 * 19 18 17 32 32 H 1.08993 * 110.97998 * 154.20909 * 19 18 17 33 33 H 1.09004 * 110.69782 * 206.04069 * 20 19 18 34 34 H 1.09008 * 110.69415 * 82.83556 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 7 4.0000 -2.5751 -0.0105 11 6 4.2464 -3.2814 -1.1199 12 8 4.0894 -2.8490 -2.2448 13 7 4.6870 -4.5237 -0.8510 14 6 4.7343 -4.6455 0.6163 15 1 4.0636 -5.4340 0.9575 16 6 6.1644 -4.9160 1.0882 17 6 6.6111 -6.2947 0.5979 18 8 5.8182 -7.3128 1.2315 19 6 6.7318 -8.4161 1.4419 20 6 8.0495 -7.6740 1.7776 21 8 7.9881 -6.5039 0.9373 22 6 4.2620 -3.2894 1.1018 23 8 4.1430 -2.9240 2.2516 24 1 -0.4850 0.8400 -0.0004 25 1 3.8713 -0.6783 -0.8962 26 1 3.8786 -0.6819 0.8837 27 1 4.9269 -5.2060 -1.4972 28 1 6.8305 -4.1534 0.6845 29 1 6.1989 -4.8889 2.1773 30 1 6.4867 -6.3569 -0.4833 31 1 6.8395 -9.0118 0.5354 32 1 6.4090 -9.0360 2.2783 33 1 8.9133 -8.2875 1.5213 34 1 8.0751 -7.3914 2.8301 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119689446.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:16 Heat of formation + Delta-G solvation = -125.190070 kcal Electronic energy + Delta-G solvation = -21040.526690 eV Core-core repulsion = 17553.990782 eV Total energy + Delta-G solvation = -3486.535907 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.88520 -40.61002 -37.96302 -35.93026 -35.36526 -34.79660 -32.67008 -31.81219 -29.33934 -28.51675 -25.81770 -23.68322 -23.08168 -22.73019 -21.37092 -19.80841 -17.79373 -17.58534 -17.24323 -17.01702 -16.66985 -15.82562 -15.63233 -15.24485 -15.00755 -14.65415 -14.08907 -13.95210 -13.89785 -13.56458 -13.24159 -13.00291 -12.66679 -12.45337 -12.18747 -11.97743 -11.65992 -11.29815 -10.67593 -10.64283 -10.43645 -10.27278 -10.05833 -9.67351 -9.53042 -9.24213 -8.67569 -8.64392 -6.14702 -4.16417 2.12885 2.80742 3.01212 3.27996 3.34010 3.34761 3.49049 3.57360 3.74278 4.15741 4.30632 4.34707 4.48788 4.52957 4.65683 4.86777 4.89780 5.02743 5.07474 5.16898 5.24625 5.43313 5.66960 5.73108 5.87527 6.37916 6.63714 6.66946 6.72627 7.08156 7.42876 7.77742 7.96510 8.34396 8.70400 8.85138 9.41685 10.98239 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.039077 B = 0.004434 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.359793 B = 6313.644576 C = 6443.692206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.078 3.922 3 Si 0.876 3.124 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.220 3.780 10 N -0.552 5.552 11 C 0.703 3.297 12 O -0.539 6.539 13 N -0.736 5.736 14 C 0.097 3.903 15 H 0.129 0.871 16 C -0.130 4.130 17 C 0.237 3.763 18 O -0.373 6.373 19 C 0.016 3.984 20 C 0.019 3.981 21 O -0.381 6.381 22 C 0.526 3.474 23 O -0.469 6.469 24 H 0.267 0.733 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.431 0.569 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.544 -16.954 3.009 23.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.702 3.298 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.095 0.905 9 C 0.101 3.899 10 N -0.296 5.296 11 C 0.404 3.596 12 O -0.412 6.412 13 N -0.402 5.402 14 C -0.012 4.012 15 H 0.146 0.854 16 C -0.169 4.169 17 C 0.142 3.858 18 O -0.294 6.294 19 C -0.060 4.060 20 C -0.057 4.057 21 O -0.302 6.302 22 C 0.311 3.689 23 O -0.339 6.339 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.275 0.725 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 16.104 -16.082 3.034 22.960 hybrid contribution 0.338 0.327 -0.292 0.554 sum 16.442 -15.755 2.742 22.936 Atomic orbital electron populations 1.69880 1.06182 1.27289 1.49432 1.24786 0.94837 0.98952 0.93979 0.86849 0.80406 0.83574 0.78968 1.19628 1.20651 1.18808 1.21122 0.88243 0.95386 1.52868 0.90486 1.19953 0.96769 0.74274 0.98905 1.46447 1.59181 1.17366 1.06577 1.15913 0.77687 0.81188 0.84845 1.90968 1.56638 1.72672 1.20917 1.45584 1.72626 1.15130 1.06892 1.21942 0.98703 0.98708 0.81869 0.85361 1.22176 0.94488 0.96233 1.04034 1.24009 0.76502 0.88737 0.96601 1.89284 1.33590 1.25360 1.81153 1.24409 0.88179 0.90741 1.02714 1.24233 0.98986 0.86297 0.96168 1.88917 1.25124 1.47281 1.68924 1.20484 0.76638 0.86302 0.85436 1.90755 1.50040 1.75152 1.17965 0.92266 0.93430 0.93193 0.72522 0.88586 0.88131 0.89500 0.90458 0.87119 0.88120 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.56 13.96 55.43 0.77 -26.79 16 2 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 3 Si 0.88 21.48 27.46 -169.99 -4.67 16.81 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.26 -6.14 6.55 56.52 0.37 -5.77 16 7 C -0.54 -15.79 9.94 -34.44 -0.34 -16.13 16 8 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 9 C 0.22 5.52 4.52 -5.19 -0.02 5.49 16 10 N -0.55 -12.01 2.59 -122.02 -0.32 -12.32 16 11 C 0.70 14.10 8.62 -88.02 -0.76 13.34 16 12 O -0.54 -12.70 17.48 5.33 0.09 -12.61 16 13 N -0.74 -10.43 5.96 -59.19 -0.35 -10.79 16 14 C 0.10 1.34 3.61 -68.20 -0.25 1.09 16 15 H 0.13 1.62 7.82 -51.93 -0.41 1.21 16 16 C -0.13 -1.47 5.06 -26.73 -0.14 -1.60 16 17 C 0.24 2.28 3.97 37.16 0.15 2.43 16 18 O -0.37 -3.59 10.90 -59.04 -0.64 -4.23 16 19 C 0.02 0.10 7.95 38.17 0.30 0.40 16 20 C 0.02 0.12 8.07 38.17 0.31 0.43 16 21 O -0.38 -3.75 11.21 -59.04 -0.66 -4.41 16 22 C 0.53 10.12 7.64 -10.56 -0.08 10.04 16 23 O -0.47 -10.20 17.75 5.60 0.10 -10.10 16 24 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 25 H 0.05 1.19 7.28 -51.93 -0.38 0.81 16 26 H 0.05 1.24 7.06 -51.93 -0.37 0.87 16 27 H 0.43 4.68 8.30 -40.82 -0.34 4.34 16 28 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.10 1.14 8.14 -51.92 -0.42 0.72 16 30 H 0.09 0.74 7.25 -51.92 -0.38 0.37 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.46 8.14 -51.92 -0.42 0.03 16 LS Contribution 295.88 15.07 4.46 4.46 Total: -1.00 -36.03 295.88 -6.13 -42.16 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -3.99 Total: 0.13 kcal Atomic # 6 Polarization: 18.62 SS G_CDS: -0.93 Total: 17.69 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 0.11 Total: -49.90 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -1.11 Total: -31.35 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -36.03 -6.13 -42.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119689446.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.028 kcal (2) G-P(sol) polarization free energy of solvation -36.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds