Wall clock time and date at job start Mon Mar 30 2020 01:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99918 * 2 1 4 4 H 1.48503 * 109.47255 * 269.99795 * 3 2 1 5 5 H 1.48505 * 109.46992 * 29.99936 * 3 2 1 6 6 H 1.48496 * 109.47174 * 149.99953 * 3 2 1 7 7 C 1.38805 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00483 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00068 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00284 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47375 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47375 * 179.97438 * 11 10 9 13 13 C 1.34778 * 120.00282 * 179.97438 * 12 11 10 14 14 O 1.21569 * 119.99855 * 0.02562 * 13 12 11 15 15 C 1.47727 * 120.00078 * 180.02562 * 13 12 11 16 16 C 1.39647 * 120.11032 * 359.97438 * 15 13 12 17 17 C 1.37851 * 119.92663 * 179.97438 * 16 15 13 18 18 C 1.38611 * 120.14691 * 0.03045 * 17 16 15 19 19 F 1.35101 * 119.88748 * 180.27877 * 18 17 16 20 20 C 1.38835 * 120.21757 * 359.97438 * 18 17 16 21 21 F 1.35098 * 119.96034 * 180.02562 * 20 18 17 22 22 C 1.38050 * 120.07440 * 359.97438 * 20 18 17 23 23 H 0.96998 * 120.00216 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00306 * 0.02562 * 9 7 2 25 25 H 1.09001 * 109.47230 * 59.99715 * 10 9 7 26 26 H 1.09004 * 109.46899 * 299.99755 * 10 9 7 27 27 H 1.09000 * 109.47686 * 59.99948 * 11 10 9 28 28 H 1.09004 * 109.46825 * 299.99700 * 11 10 9 29 29 H 0.97005 * 119.99990 * 0.02562 * 12 11 10 30 30 H 1.08008 * 120.03895 * 0.02562 * 16 15 13 31 31 H 1.08001 * 119.92725 * 180.02562 * 17 16 15 32 32 H 1.08002 * 120.07427 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0639 -4.8196 -0.0001 12 7 1.7964 -6.0884 -0.0007 13 6 1.1226 -7.2556 -0.0008 14 8 -0.0931 -7.2556 -0.0009 15 6 1.8612 -8.5349 -0.0009 16 6 3.2577 -8.5376 -0.0014 17 6 3.9432 -9.7336 -0.0009 18 6 3.2494 -10.9336 -0.0005 19 9 3.9264 -12.1027 0.0056 20 6 1.8610 -10.9380 -0.0002 21 9 1.1901 -12.1106 0.0007 22 6 1.1654 -9.7456 0.0004 23 1 -0.4850 0.8400 -0.0004 24 1 0.3557 -2.3881 -0.0002 25 1 2.6848 -3.7145 0.8905 26 1 2.6847 -3.7145 -0.8895 27 1 0.4376 -4.7618 -0.8903 28 1 0.4370 -4.7621 0.8897 29 1 2.7665 -6.0884 -0.0003 30 1 3.8002 -7.6036 -0.0013 31 1 5.0232 -9.7357 -0.0008 32 1 0.0854 -9.7490 0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129483904.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:47 Heat of formation + Delta-G solvation = -110.050636 kcal Electronic energy + Delta-G solvation = -19049.932551 eV Core-core repulsion = 15452.965624 eV Total energy + Delta-G solvation = -3596.966927 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.63262 -49.70971 -41.34160 -39.22847 -37.32715 -35.60223 -33.30017 -32.20392 -31.78839 -29.29893 -26.00376 -24.72954 -24.24223 -23.06723 -21.80280 -19.70147 -19.21511 -18.71739 -18.24899 -17.48226 -17.30948 -16.96957 -16.69401 -16.44245 -16.11774 -15.62816 -15.44390 -15.26445 -15.14984 -15.07033 -14.62188 -14.16528 -13.78449 -13.29379 -13.02353 -12.99607 -12.64976 -12.53320 -12.43767 -12.06158 -11.85365 -11.26903 -10.97043 -10.34929 -10.22203 -9.90291 -9.04058 -7.95031 -5.26078 -0.65567 -0.14819 1.49955 1.50647 1.52639 1.60979 1.88023 2.44930 2.57471 2.61689 3.17409 3.39524 3.39869 3.47283 3.78591 3.89958 4.01688 4.17363 4.24659 4.49894 4.59355 4.62769 4.75046 4.83100 4.95391 5.03322 5.16561 5.30332 5.51091 5.52215 6.26044 6.41975 7.07269 7.32465 8.05100 8.26716 9.28733 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.049957 B = 0.002809 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.351437 B = 9965.457912 C =10505.360941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.978 3.022 4 H -0.287 1.287 5 H -0.299 1.299 6 H -0.264 1.264 7 C -0.245 4.245 8 H 0.085 0.915 9 N -0.749 5.749 10 C 0.147 3.853 11 C 0.126 3.874 12 N -0.698 5.698 13 C 0.557 3.443 14 O -0.578 6.578 15 C -0.120 4.120 16 C -0.047 4.047 17 C -0.113 4.113 18 C 0.087 3.913 19 F -0.129 7.129 20 C 0.046 3.954 21 F -0.136 7.136 22 C -0.075 4.075 23 H 0.252 0.748 24 H 0.374 0.626 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.419 0.581 30 H 0.182 0.818 31 H 0.192 0.808 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.645 -22.265 0.033 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.806 3.194 4 H -0.214 1.214 5 H -0.226 1.226 6 H -0.189 1.189 7 C -0.377 4.377 8 H 0.103 0.897 9 N -0.392 5.392 10 C 0.021 3.979 11 C 0.001 3.999 12 N -0.351 5.351 13 C 0.344 3.656 14 O -0.459 6.459 15 C -0.124 4.124 16 C -0.066 4.066 17 C -0.131 4.131 18 C 0.067 3.933 19 F -0.108 7.108 20 C 0.026 3.974 21 F -0.115 7.115 22 C -0.095 4.095 23 H 0.060 0.940 24 H 0.205 0.795 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.258 0.742 30 H 0.199 0.801 31 H 0.209 0.791 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 10.970 -22.229 0.043 24.789 hybrid contribution -0.282 0.445 -0.020 0.527 sum 10.688 -21.784 0.023 24.265 Atomic orbital electron populations 1.69833 1.06857 1.26240 1.59296 1.25656 0.96388 1.01456 1.03501 0.85083 0.77773 0.79096 0.77434 1.21385 1.22551 1.18884 1.19659 0.91798 0.84795 1.41443 0.89673 1.42439 1.05808 1.01161 1.89787 1.20882 0.93561 0.83839 0.99649 1.21231 0.94925 0.82161 1.01564 1.45552 1.11360 1.04384 1.73794 1.18386 0.86799 0.84324 0.76049 1.90808 1.15446 1.88051 1.51550 1.19660 0.94749 0.91590 1.06373 1.21646 0.91229 1.00264 0.93447 1.21410 1.03284 0.88321 1.00103 1.18183 0.87854 0.83438 1.03843 1.91550 1.79549 1.46057 1.93609 1.17595 0.88979 0.82069 1.08720 1.91527 1.80360 1.45303 1.94290 1.21104 1.02004 0.89397 0.96983 0.93970 0.79477 0.94026 0.94042 0.92460 0.92450 0.74162 0.80089 0.79131 0.83391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.98 13.06 21.65 0.28 -58.70 16 2 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 3 Si 0.98 44.65 29.55 68.60 2.03 46.67 16 4 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 6 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.25 -13.09 9.99 84.03 0.84 -12.25 16 8 H 0.09 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.75 -36.39 5.60 -343.46 -1.92 -38.31 16 10 C 0.15 5.11 6.37 86.38 0.55 5.66 16 11 C 0.13 3.90 5.79 86.38 0.50 4.40 16 12 N -0.70 -15.51 5.51 -466.09 -2.57 -18.07 16 13 C 0.56 14.06 7.77 86.75 0.67 14.73 16 14 O -0.58 -20.20 16.34 -3.93 -0.06 -20.26 16 15 C -0.12 -2.16 5.87 -20.09 -0.12 -2.28 16 16 C -0.05 -0.46 9.53 22.52 0.21 -0.25 16 17 C -0.11 -0.98 10.01 22.27 0.22 -0.76 16 18 C 0.09 1.31 7.31 22.50 0.16 1.48 16 19 F -0.13 -2.19 17.17 44.97 0.77 -1.41 16 20 C 0.05 0.87 7.30 22.37 0.16 1.04 16 21 F -0.14 -2.96 17.18 44.97 0.77 -2.19 16 22 C -0.08 -1.48 9.57 22.56 0.22 -1.27 16 23 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 24 H 0.37 19.82 7.67 -92.71 -0.71 19.11 16 25 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.42 5.77 6.50 -92.70 -0.60 5.17 16 30 H 0.18 0.51 6.40 -2.91 -0.02 0.49 16 31 H 0.19 0.34 8.06 -2.91 -0.02 0.32 16 32 H 0.15 3.21 7.65 -2.91 -0.02 3.19 16 Total: -1.00 -71.51 295.73 3.07 -68.44 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -0.13 Total: 17.22 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 3.89 Total: 6.61 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -4.21 Total: -115.08 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.06 Total: -20.26 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 1.54 Total: -3.61 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -71.51 3.07 -68.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129483904.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.609 kcal (2) G-P(sol) polarization free energy of solvation -71.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds