Wall clock time and date at job start Mon Mar 30 2020 01:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99587 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47352 * 30.00406 * 3 2 1 6 6 H 1.48501 * 109.47062 * 150.00456 * 3 2 1 7 7 C 1.38805 * 120.00484 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36943 * 120.00174 * 179.97438 * 7 2 1 10 10 C 1.46496 * 119.99943 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47030 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47035 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99873 * 179.97438 * 12 11 10 14 14 O 1.21570 * 119.99748 * 0.02562 * 13 12 11 15 15 C 1.47696 * 120.00110 * 179.97438 * 13 12 11 16 16 C 1.39652 * 120.15457 * 359.73054 * 15 13 12 17 17 C 1.38065 * 119.85307 * 179.78649 * 16 15 13 18 18 F 1.35104 * 119.91634 * 180.20570 * 17 16 15 19 19 C 1.38654 * 120.16478 * 0.48632 * 17 16 15 20 20 C 1.38184 * 120.31471 * 359.74164 * 19 17 16 21 21 C 1.38318 * 120.14696 * 0.02621 * 20 19 17 22 22 F 1.35093 * 120.08408 * 179.97438 * 21 20 19 23 23 H 0.97000 * 120.00708 * 359.97438 * 1 2 3 24 24 H 0.96999 * 119.99971 * 0.02562 * 9 7 2 25 25 H 1.09004 * 109.47074 * 60.00350 * 10 9 7 26 26 H 1.09004 * 109.47714 * 300.00259 * 10 9 7 27 27 H 1.09004 * 109.46930 * 60.00232 * 11 10 9 28 28 H 1.09000 * 109.47312 * 300.00176 * 11 10 9 29 29 H 0.96999 * 120.00080 * 0.02562 * 12 11 10 30 30 H 1.08009 * 120.07508 * 0.02562 * 16 15 13 31 31 H 1.08003 * 119.84410 * 179.72300 * 19 17 16 32 32 H 1.07996 * 119.92792 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4974 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3797 -1.2020 -0.0011 10 6 4.1122 -2.4706 -0.0011 11 6 5.6165 -2.1909 -0.0011 12 7 6.3491 -3.4597 -0.0017 13 6 7.6968 -3.4596 -0.0023 14 8 8.3046 -2.4067 -0.0019 15 6 8.4354 -4.7386 -0.0024 16 6 7.7406 -5.9500 0.0039 17 6 8.4372 -7.1419 -0.0006 18 9 7.7663 -8.3146 0.0012 19 6 9.8238 -7.1385 -0.0012 20 6 10.5183 -5.9439 -0.0027 21 6 9.8335 -4.7422 -0.0030 22 9 10.5138 -3.5751 -0.0039 23 1 -0.4851 0.8400 0.0004 24 1 3.8647 -0.3619 -0.0007 25 1 3.8486 -3.0424 -0.8909 26 1 3.8493 -3.0421 0.8891 27 1 5.8798 -1.6194 0.8890 28 1 5.8798 -1.6193 -0.8910 29 1 5.8641 -4.2997 -0.0024 30 1 6.6605 -5.9544 0.0084 31 1 10.3635 -8.0740 -0.0003 32 1 11.5983 -5.9486 -0.0027 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129491937.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:52 Heat of formation + Delta-G solvation = -106.023690 kcal Electronic energy + Delta-G solvation = -19379.176013 eV Core-core repulsion = 15782.383707 eV Total energy + Delta-G solvation = -3596.792306 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.01726 -49.98409 -41.22696 -39.28738 -37.50204 -35.67838 -33.66496 -32.70470 -31.11557 -29.78791 -26.05359 -24.90482 -23.76494 -23.08445 -21.87350 -20.02283 -19.34670 -18.56319 -18.31663 -17.33784 -17.17888 -16.93404 -16.61297 -16.38182 -16.30857 -15.67685 -15.65312 -15.38938 -15.24831 -14.85092 -14.52015 -14.19934 -13.67335 -13.46554 -13.29635 -12.98119 -12.73112 -12.67416 -12.55811 -12.09662 -11.83882 -11.24915 -11.04992 -10.53938 -10.24103 -9.72559 -9.37825 -8.06083 -5.41743 -0.60078 -0.16115 1.39124 1.40669 1.47806 1.54218 1.83119 2.38419 2.46134 2.95217 3.00238 3.25853 3.35285 3.49886 3.72532 3.84528 3.92407 4.01864 4.15808 4.38134 4.51339 4.67943 4.80743 4.84074 4.92533 4.95800 5.06094 5.21317 5.58317 5.71479 6.16658 6.31011 6.97349 7.02789 7.76495 7.93905 9.14673 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.030286 B = 0.003534 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.304139 B = 7920.764035 C = 8824.620692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.059 4.059 3 Si 0.952 3.048 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.254 1.254 7 C -0.238 4.238 8 H 0.065 0.935 9 N -0.759 5.759 10 C 0.149 3.851 11 C 0.122 3.878 12 N -0.702 5.702 13 C 0.553 3.447 14 O -0.567 6.567 15 C -0.159 4.159 16 C -0.088 4.088 17 C 0.080 3.920 18 F -0.133 7.133 19 C -0.080 4.080 20 C -0.121 4.121 21 C 0.126 3.874 22 F -0.131 7.131 23 H 0.260 0.740 24 H 0.367 0.633 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.416 0.584 30 H 0.167 0.833 31 H 0.187 0.813 32 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.121 -18.375 0.017 30.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.251 4.251 3 Si 0.779 3.221 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.179 1.179 7 C -0.369 4.369 8 H 0.083 0.917 9 N -0.405 5.405 10 C 0.023 3.977 11 C -0.003 4.003 12 N -0.355 5.355 13 C 0.341 3.659 14 O -0.447 6.447 15 C -0.163 4.163 16 C -0.108 4.108 17 C 0.060 3.940 18 F -0.111 7.111 19 C -0.098 4.098 20 C -0.140 4.140 21 C 0.105 3.895 22 F -0.110 7.110 23 H 0.069 0.931 24 H 0.200 0.800 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.255 0.745 30 H 0.184 0.816 31 H 0.204 0.796 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 24.308 -17.722 0.021 30.082 hybrid contribution -0.467 1.042 0.000 1.142 sum 23.840 -16.680 0.021 29.096 Atomic orbital electron populations 1.69861 1.07039 1.26863 1.59229 1.25475 0.96097 1.01210 1.02300 0.85462 0.78656 0.79804 0.78207 1.20347 1.22019 1.17853 1.19010 0.82154 0.93829 1.41927 0.91745 1.42543 1.02795 1.03909 1.91294 1.20843 0.88436 0.88364 1.00076 1.21314 0.90984 0.85774 1.02205 1.45582 1.05470 1.10371 1.74101 1.18305 0.82433 0.88713 0.76450 1.90841 1.68869 1.33954 1.51081 1.19699 0.92777 0.93405 1.10406 1.21323 1.02180 0.89222 0.98064 1.17590 0.90898 0.80923 1.04545 1.91566 1.80535 1.45071 1.93948 1.21596 0.91568 1.00609 0.96044 1.21320 1.03046 0.88454 1.01137 1.18154 0.88611 0.82761 0.99967 1.91571 1.79370 1.47003 1.93023 0.93149 0.80006 0.93771 0.93890 0.91745 0.91631 0.74510 0.81597 0.79568 0.79953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.32 13.97 21.65 0.30 -62.02 16 2 C -0.06 -3.45 5.50 84.86 0.47 -2.98 16 3 Si 0.95 45.52 27.74 68.60 1.90 47.42 16 4 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 6 H -0.25 -11.10 6.52 99.48 0.65 -10.45 16 7 C -0.24 -13.41 10.47 84.03 0.88 -12.53 16 8 H 0.06 3.90 8.06 -2.91 -0.02 3.88 16 9 N -0.76 -34.87 5.41 -343.45 -1.86 -36.73 16 10 C 0.15 5.21 6.37 86.38 0.55 5.76 16 11 C 0.12 3.69 5.79 86.38 0.50 4.19 16 12 N -0.70 -17.03 5.51 -466.09 -2.57 -19.59 16 13 C 0.55 15.24 7.77 86.74 0.67 15.91 16 14 O -0.57 -20.68 15.34 -3.94 -0.06 -20.75 16 15 C -0.16 -3.23 5.88 -20.06 -0.12 -3.35 16 16 C -0.09 -1.25 9.51 22.57 0.21 -1.04 16 17 C 0.08 0.95 7.29 22.33 0.16 1.11 16 18 F -0.13 -1.77 17.26 44.97 0.78 -0.99 16 19 C -0.08 -0.61 10.01 22.36 0.22 -0.39 16 20 C -0.12 -1.25 10.01 22.28 0.22 -1.02 16 21 C 0.13 2.44 7.28 22.67 0.17 2.61 16 22 F -0.13 -3.42 15.55 44.97 0.70 -2.72 16 23 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 24 H 0.37 16.35 5.53 -92.71 -0.51 15.84 16 25 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 26 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 28 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.42 7.25 6.51 -92.71 -0.60 6.64 16 30 H 0.17 1.69 6.41 -2.91 -0.02 1.67 16 31 H 0.19 0.16 8.06 -2.91 -0.02 0.14 16 32 H 0.18 0.79 8.06 -2.91 -0.02 0.76 16 Total: -1.00 -75.49 290.88 3.15 -72.34 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.01 Total: 14.75 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 3.94 Total: 8.28 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -4.12 Total: -118.34 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.06 Total: -20.75 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 1.48 Total: -3.71 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.90 Total: 47.42 kcal Total: -75.49 3.15 -72.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129491937.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.685 kcal (2) G-P(sol) polarization free energy of solvation -75.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds