Wall clock time and date at job start Mon Mar 30 2020 00:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47259 * 2 1 4 4 N 1.31234 * 124.05466 * 89.97187 * 3 2 1 5 5 N 1.27336 * 120.03850 * 180.02562 * 4 3 2 6 6 S 1.56637 * 109.74129 * 0.02562 * 5 4 3 7 7 C 1.38241 * 124.05354 * 269.97592 * 3 2 1 8 8 C 1.47179 * 128.47808 * 359.97438 * 7 3 2 9 9 O 1.21614 * 119.99837 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99934 * 180.02562 * 8 7 3 11 11 C 1.46497 * 119.99666 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46902 * 179.97438 * 11 10 8 13 13 N 1.46505 * 109.47107 * 180.02562 * 12 11 10 14 14 C 1.36942 * 119.99988 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99745 * 359.97438 * 14 13 12 16 16 C 1.38809 * 119.99742 * 179.97438 * 14 13 12 17 17 N 1.31614 * 120.00187 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99666 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47052 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46807 * 120.00336 * 18 16 14 21 21 H 1.48501 * 109.47045 * 239.99734 * 18 16 14 22 22 H 1.08991 * 109.47410 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47298 * 300.00251 * 1 2 3 24 24 H 1.09013 * 109.47130 * 59.99875 * 1 2 3 25 25 H 1.08997 * 109.47298 * 239.99748 * 2 1 3 26 26 H 1.08998 * 109.47094 * 119.99606 * 2 1 3 27 27 H 0.97001 * 120.00005 * 359.97438 * 10 8 7 28 28 H 1.08993 * 109.47793 * 299.99917 * 11 10 8 29 29 H 1.09003 * 109.47026 * 60.00099 * 11 10 8 30 30 H 1.09001 * 109.47174 * 299.99963 * 12 11 10 31 31 H 1.08994 * 109.47731 * 60.00261 * 12 11 10 32 32 H 0.97001 * 120.00124 * 359.97438 * 13 12 11 33 33 H 0.97005 * 120.00151 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2768 2.1139 1.0873 5 7 2.6999 3.3116 0.9981 6 16 2.8409 3.7120 -0.5096 7 6 2.2909 2.1505 -1.1453 8 6 2.1446 1.7336 -2.5493 9 8 1.7490 0.6143 -2.8131 10 7 2.4492 2.5923 -3.5424 11 6 2.3041 2.1771 -4.9398 12 6 2.7118 3.3300 -5.8593 13 7 2.5662 2.9150 -7.2568 14 6 2.8755 3.7875 -8.2659 15 1 3.2264 4.7817 -8.0316 16 6 2.7380 3.3941 -9.5900 17 7 2.3099 2.1827 -9.8755 18 14 3.1593 4.5846 -10.9665 19 1 3.6138 5.8730 -10.3849 20 1 4.2431 4.0100 -11.8034 21 1 1.9562 4.8167 -11.8057 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8901 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.7644 3.4852 -3.3319 28 1 2.9438 1.3157 -5.1312 29 1 1.2655 1.9085 -5.1331 30 1 2.0717 4.1912 -5.6678 31 1 3.7502 3.5991 -5.6662 32 1 2.2514 2.0220 -7.4673 33 1 2.2142 1.9077 -10.8008 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130970499.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:00 Heat of formation + Delta-G solvation = 39.985878 kcal Electronic energy + Delta-G solvation = -17596.737576 eV Core-core repulsion = 14592.409858 eV Total energy + Delta-G solvation = -3004.327718 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.27988 -39.59047 -35.93207 -34.58698 -34.01977 -31.55751 -30.66081 -28.46345 -27.18399 -24.40440 -23.67604 -22.32687 -21.59147 -20.41472 -18.70339 -17.78307 -17.13248 -16.33883 -15.89095 -15.36405 -14.89900 -14.61547 -14.37793 -14.25642 -13.88505 -13.28184 -13.25791 -12.96689 -12.76512 -12.36172 -11.69102 -11.61472 -11.21908 -11.16952 -10.90401 -10.87723 -10.60684 -10.24531 -10.12348 -10.10706 -10.02266 -9.82391 -9.18657 -8.96316 -7.06430 -5.85468 -3.16731 -0.54728 0.51929 1.17981 1.67092 2.80367 2.83968 3.38596 3.44066 3.46543 3.58429 4.26437 4.46713 4.55440 4.86746 5.06968 5.09978 5.36107 5.42687 5.53509 5.64991 5.71023 5.81917 5.89412 5.97926 6.05107 6.26946 6.56676 6.58232 7.21510 7.38822 7.61115 7.90712 8.31742 9.43525 9.96776 10.31383 11.37006 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.035550 B = 0.003358 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.431895 B = 8335.442227 C = 9018.184806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 C 0.102 3.898 4 N -0.249 5.249 5 N -0.256 5.256 6 S 0.415 5.585 7 C -0.285 4.285 8 C 0.598 3.402 9 O -0.511 6.511 10 N -0.712 5.712 11 C 0.111 3.889 12 C 0.143 3.857 13 N -0.729 5.729 14 C -0.246 4.246 15 H 0.073 0.927 16 C -0.011 4.011 17 N -0.930 5.930 18 Si 0.910 3.090 19 H -0.280 1.280 20 H -0.290 1.290 21 H -0.290 1.290 22 H 0.069 0.931 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.108 0.892 26 H 0.087 0.913 27 H 0.399 0.601 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.387 0.613 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.442 0.258 20.503 20.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.088 4.088 3 C -0.045 4.045 4 N -0.114 5.114 5 N -0.236 5.236 6 S 0.551 5.449 7 C -0.426 4.426 8 C 0.381 3.619 9 O -0.387 6.387 10 N -0.364 5.364 11 C -0.012 4.012 12 C 0.015 3.985 13 N -0.374 5.374 14 C -0.377 4.377 15 H 0.091 0.909 16 C -0.207 4.207 17 N -0.577 5.577 18 Si 0.741 3.259 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.217 1.217 22 H 0.088 0.912 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.126 0.874 26 H 0.105 0.895 27 H 0.233 0.767 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.221 0.779 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.127 1.152 21.322 21.353 hybrid contribution -0.095 -0.319 -1.339 1.380 sum -0.221 0.833 19.983 20.001 Atomic orbital electron populations 1.21668 0.93275 1.02809 1.02205 1.20322 0.97012 0.86350 1.05119 1.22989 0.96703 0.99772 0.85010 1.70607 1.13844 0.99000 1.27997 1.78883 1.18490 1.10594 1.15641 1.82598 1.46364 1.14375 1.01539 1.27855 1.14529 1.00060 1.00185 1.16406 0.78544 0.85165 0.81803 1.90831 1.45600 1.19376 1.82875 1.45827 1.67116 1.16450 1.06962 1.21713 1.02717 0.99236 0.77523 1.20768 0.98055 0.93774 0.85900 1.42179 1.80582 1.16128 0.98544 1.19228 1.37544 0.95104 0.85794 0.90922 1.24781 1.01798 0.96820 0.97310 1.69672 1.52168 1.17736 1.18166 0.86081 0.77607 0.79960 0.82274 1.20473 1.21740 1.21732 0.91171 0.92624 0.92074 0.87419 0.89473 0.76727 0.90598 0.90601 0.95619 0.95618 0.77945 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.89 37.16 0.37 -0.93 16 2 C -0.05 -0.47 5.95 -27.88 -0.17 -0.63 16 3 C 0.10 1.17 6.25 -82.84 -0.52 0.66 16 4 N -0.25 -3.04 11.54 33.42 0.39 -2.65 16 5 N -0.26 -2.94 12.51 60.35 0.75 -2.19 16 6 S 0.41 3.70 23.05 -107.50 -2.48 1.22 16 7 C -0.29 -3.20 6.81 -35.95 -0.24 -3.45 16 8 C 0.60 7.85 7.80 -12.63 -0.10 7.75 16 9 O -0.51 -8.08 14.89 5.27 0.08 -8.00 16 10 N -0.71 -8.80 5.55 -61.47 -0.34 -9.14 16 11 C 0.11 1.72 5.79 -4.04 -0.02 1.70 16 12 C 0.14 2.60 6.37 -4.04 -0.03 2.58 16 13 N -0.73 -17.70 5.60 -59.91 -0.34 -18.04 16 14 C -0.25 -6.65 9.99 -15.06 -0.15 -6.80 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 17 N -0.93 -27.53 13.06 55.49 0.72 -26.80 16 18 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 25 H 0.11 1.17 6.47 -51.93 -0.34 0.84 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.40 3.87 7.90 -40.82 -0.32 3.55 16 28 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.39 9.93 7.67 -40.82 -0.31 9.62 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 304.74 15.07 4.59 4.59 Total: -1.00 -31.61 304.74 -6.50 -38.10 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -3.90 Total: 5.68 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -0.95 Total: 0.48 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: 1.19 Total: -58.82 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.08 Total: -8.00 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -2.48 Total: 1.22 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.61 -6.50 -38.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130970499.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.090 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds