Wall clock time and date at job start Mon Mar 30 2020 00:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47259 * 2 1 4 4 N 1.31234 * 124.05466 * 89.97187 * 3 2 1 5 5 N 1.27336 * 120.03850 * 180.02562 * 4 3 2 6 6 S 1.56637 * 109.74129 * 0.02562 * 5 4 3 7 7 C 1.38241 * 124.05354 * 269.97592 * 3 2 1 8 8 C 1.47179 * 128.47808 * 359.97438 * 7 3 2 9 9 O 1.21614 * 119.99837 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99934 * 180.02562 * 8 7 3 11 11 C 1.46497 * 119.99666 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46902 * 179.97438 * 11 10 8 13 13 N 1.46505 * 109.47107 * 180.02562 * 12 11 10 14 14 C 1.36942 * 119.99988 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99745 * 359.97438 * 14 13 12 16 16 C 1.38809 * 119.99742 * 179.97438 * 14 13 12 17 17 N 1.31614 * 120.00187 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99666 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47052 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46807 * 120.00336 * 18 16 14 21 21 H 1.48501 * 109.47045 * 239.99734 * 18 16 14 22 22 H 1.08991 * 109.47410 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47298 * 300.00251 * 1 2 3 24 24 H 1.09013 * 109.47130 * 59.99875 * 1 2 3 25 25 H 1.08997 * 109.47298 * 239.99748 * 2 1 3 26 26 H 1.08998 * 109.47094 * 119.99606 * 2 1 3 27 27 H 0.97001 * 120.00005 * 359.97438 * 10 8 7 28 28 H 1.08993 * 109.47793 * 299.99917 * 11 10 8 29 29 H 1.09003 * 109.47026 * 60.00099 * 11 10 8 30 30 H 1.09001 * 109.47174 * 299.99963 * 12 11 10 31 31 H 1.08994 * 109.47731 * 60.00261 * 12 11 10 32 32 H 0.97001 * 120.00124 * 359.97438 * 13 12 11 33 33 H 0.97005 * 120.00151 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2768 2.1139 1.0873 5 7 2.6999 3.3116 0.9981 6 16 2.8409 3.7120 -0.5096 7 6 2.2909 2.1505 -1.1453 8 6 2.1446 1.7336 -2.5493 9 8 1.7490 0.6143 -2.8131 10 7 2.4492 2.5923 -3.5424 11 6 2.3041 2.1771 -4.9398 12 6 2.7118 3.3300 -5.8593 13 7 2.5662 2.9150 -7.2568 14 6 2.8755 3.7875 -8.2659 15 1 3.2264 4.7817 -8.0316 16 6 2.7380 3.3941 -9.5900 17 7 2.3099 2.1827 -9.8755 18 14 3.1593 4.5846 -10.9665 19 1 3.6138 5.8730 -10.3849 20 1 4.2431 4.0100 -11.8034 21 1 1.9562 4.8167 -11.8057 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8901 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.7644 3.4852 -3.3319 28 1 2.9438 1.3157 -5.1312 29 1 1.2655 1.9085 -5.1331 30 1 2.0717 4.1912 -5.6678 31 1 3.7502 3.5991 -5.6662 32 1 2.2514 2.0220 -7.4673 33 1 2.2142 1.9077 -10.8008 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130970499.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:59 Heat of formation + Delta-G solvation = 16.438169 kcal Electronic energy + Delta-G solvation = -17597.758682 eV Core-core repulsion = 14592.409858 eV Total energy + Delta-G solvation = -3005.348824 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.15410 -40.67498 -37.38408 -35.67530 -35.34061 -33.26559 -31.70095 -29.76592 -28.35579 -25.80071 -24.87296 -23.53016 -22.90701 -21.43985 -19.56406 -19.32571 -18.54351 -17.27455 -17.08210 -16.52492 -16.48493 -15.79366 -15.48657 -15.18487 -15.13894 -15.06609 -14.73713 -14.06743 -13.56841 -13.17420 -13.12697 -13.03469 -12.70130 -12.52818 -12.41221 -12.02785 -11.95424 -11.84511 -11.52743 -11.17401 -11.00341 -10.98146 -10.84788 -10.27819 -9.04347 -7.95430 -5.26259 -1.41384 -0.30088 0.35950 0.78303 1.50758 1.51415 1.61413 1.76085 1.78782 2.58227 2.74342 3.39666 3.40145 3.55800 3.97550 4.06467 4.16790 4.23293 4.31946 4.34709 4.59895 4.78957 4.94355 5.00600 5.13255 5.14253 5.22193 5.31018 5.51512 6.21977 6.25810 6.53130 6.89146 7.32652 8.04457 8.26535 9.28271 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.035550 B = 0.003358 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.431895 B = 8335.442227 C = 9018.184806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.048 4.048 3 C 0.102 3.898 4 N -0.269 5.269 5 N -0.281 5.281 6 S 0.505 5.495 7 C -0.310 4.310 8 C 0.603 3.397 9 O -0.542 6.542 10 N -0.702 5.702 11 C 0.129 3.871 12 C 0.145 3.855 13 N -0.747 5.747 14 C -0.246 4.246 15 H 0.084 0.916 16 C -0.075 4.075 17 N -0.969 5.969 18 Si 0.976 3.024 19 H -0.262 1.262 20 H -0.295 1.295 21 H -0.295 1.295 22 H 0.084 0.916 23 H 0.059 0.941 24 H 0.043 0.957 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.414 0.586 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.375 0.625 33 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.141 1.920 21.543 21.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.089 4.089 3 C -0.046 4.046 4 N -0.134 5.134 5 N -0.261 5.261 6 S 0.641 5.359 7 C -0.451 4.451 8 C 0.387 3.613 9 O -0.420 6.420 10 N -0.354 5.354 11 C 0.005 3.995 12 C 0.018 3.982 13 N -0.390 5.390 14 C -0.377 4.377 15 H 0.102 0.898 16 C -0.268 4.268 17 N -0.620 5.620 18 Si 0.804 3.196 19 H -0.186 1.186 20 H -0.222 1.222 21 H -0.222 1.222 22 H 0.103 0.897 23 H 0.078 0.922 24 H 0.062 0.938 25 H 0.114 0.886 26 H 0.121 0.879 27 H 0.250 0.750 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.207 0.793 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.477 2.872 22.428 22.616 hybrid contribution -0.245 -0.752 -1.569 1.757 sum 0.232 2.120 20.859 20.967 Atomic orbital electron populations 1.21635 0.92783 1.03582 1.01487 1.20364 0.97393 0.85888 1.05264 1.23205 0.96174 1.00279 0.84982 1.70677 1.14992 0.99319 1.28365 1.78648 1.18968 1.10725 1.17806 1.82236 1.43252 1.11374 0.98998 1.27662 1.16266 1.02100 0.99057 1.16541 0.77689 0.84635 0.82469 1.90820 1.46878 1.20744 1.83528 1.45572 1.67117 1.17172 1.05572 1.21290 1.01687 0.97868 0.78700 1.20886 0.99013 0.94872 0.83398 1.42408 1.80509 1.15416 1.00683 1.19676 1.35755 0.95696 0.86580 0.89830 1.25618 1.02828 0.98463 0.99856 1.69828 1.54304 1.19719 1.18139 0.85044 0.76780 0.78587 0.79139 1.18585 1.22211 1.22200 0.89729 0.92172 0.93797 0.88597 0.87906 0.74958 0.91690 0.91715 0.94201 0.94187 0.79308 0.93947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.89 71.98 0.71 -1.72 16 2 C -0.05 -0.93 5.95 29.85 0.18 -0.75 16 3 C 0.10 2.23 6.25 42.65 0.27 2.49 16 4 N -0.27 -6.21 11.54 -48.18 -0.56 -6.76 16 5 N -0.28 -5.92 12.51 37.02 0.46 -5.45 16 6 S 0.51 7.70 23.05 -56.49 -1.30 6.39 16 7 C -0.31 -6.51 6.81 24.62 0.17 -6.34 16 8 C 0.60 15.22 7.80 86.59 0.68 15.90 16 9 O -0.54 -17.14 14.89 -4.08 -0.06 -17.20 16 10 N -0.70 -16.17 5.55 -466.64 -2.59 -18.76 16 11 C 0.13 3.87 5.79 86.38 0.50 4.37 16 12 C 0.15 5.03 6.37 86.38 0.55 5.58 16 13 N -0.75 -35.88 5.60 -343.45 -1.92 -37.80 16 14 C -0.25 -13.04 9.99 84.03 0.84 -12.20 16 15 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 16 C -0.08 -4.19 5.50 84.86 0.47 -3.72 16 17 N -0.97 -58.20 13.06 21.65 0.28 -57.92 16 18 Si 0.98 44.52 29.55 68.60 2.03 46.55 16 19 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 20 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 22 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 25 H 0.10 2.09 6.47 -2.39 -0.02 2.08 16 26 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.41 6.90 7.90 -92.71 -0.73 6.17 16 28 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.38 19.52 7.67 -92.71 -0.71 18.80 16 33 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 Total: -1.00 -67.21 304.74 0.41 -66.81 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -0.29 Total: 20.55 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: 4.36 Total: 3.60 kcal Atomic # 7 Polarization: -122.37 SS G_CDS: -4.33 Total: -126.70 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.06 Total: -17.20 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: 7.70 SS G_CDS: -1.30 Total: 6.39 kcal Total: -67.21 0.41 -66.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130970499.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.243 kcal (2) G-P(sol) polarization free energy of solvation -67.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds