Wall clock time and date at job start Mon Mar 30 2020 01:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35739 * 116.99692 * 2 1 4 4 C 1.39213 * 120.84145 * 0.02562 * 3 2 1 5 5 C 1.38127 * 119.07994 * 179.97438 * 4 3 2 6 6 Cl 1.73605 * 119.60132 * 179.97438 * 5 4 3 7 7 N 1.32061 * 120.79350 * 0.02562 * 5 4 3 8 8 C 1.31973 * 121.84242 * 359.65454 * 7 5 4 9 9 C 1.37954 * 120.83677 * 0.63310 * 8 7 5 10 10 C 1.50708 * 120.43930 * 179.68178 * 9 8 7 11 11 N 1.46902 * 109.46760 * 259.72437 * 10 9 8 12 12 C 1.46898 * 111.00283 * 293.95026 * 11 10 9 13 13 C 1.46906 * 110.99573 * 169.99885 * 11 10 9 14 14 C 1.50706 * 109.46929 * 190.00042 * 13 11 10 15 15 H 1.07998 * 119.99628 * 0.02562 * 14 13 11 16 16 C 1.37871 * 119.99847 * 179.97438 * 14 13 11 17 17 N 1.31523 * 120.00067 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99964 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46747 * 90.00527 * 18 16 14 20 20 H 1.48504 * 109.47496 * 210.00106 * 18 16 14 21 21 H 1.48500 * 109.47352 * 330.00459 * 18 16 14 22 22 H 1.09001 * 109.47113 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47106 * 300.00467 * 1 2 3 24 24 H 1.08999 * 109.47159 * 59.99778 * 1 2 3 25 25 H 1.08001 * 120.46454 * 359.97438 * 4 3 2 26 26 H 1.08008 * 119.58097 * 180.33881 * 8 7 5 27 27 H 1.08993 * 109.46930 * 139.72686 * 10 9 8 28 28 H 1.09000 * 109.47035 * 19.72026 * 10 9 8 29 29 H 1.08997 * 109.47334 * 296.05250 * 12 11 10 30 30 H 1.09000 * 109.46674 * 56.05127 * 12 11 10 31 31 H 1.08995 * 109.47296 * 176.04950 * 12 11 10 32 32 H 1.08998 * 109.47121 * 309.99709 * 13 11 10 33 33 H 1.09000 * 109.47141 * 69.99907 * 13 11 10 34 34 H 0.96995 * 119.99723 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3042 2.3880 0.0005 5 6 1.9687 3.5989 0.0011 6 17 1.0580 5.0769 0.0011 7 7 3.2885 3.6458 0.0005 8 6 4.0241 2.5501 0.0063 9 6 3.4349 1.3027 0.0000 10 6 4.2837 0.0574 -0.0006 11 7 4.3607 -0.4820 -1.3648 12 6 3.0461 -0.9549 -1.8189 13 6 5.3639 -1.5516 -1.4521 14 6 5.5917 -1.9099 -2.8981 15 1 5.0461 -1.3942 -3.6745 16 6 6.4973 -2.8951 -3.2298 17 7 7.1620 -3.5226 -2.2842 18 14 6.7791 -3.3397 -5.0221 19 1 7.8698 -2.4973 -5.5754 20 1 7.1598 -4.7715 -5.1230 21 1 5.5318 -3.1036 -5.7927 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2246 2.3560 0.0005 26 1 5.1012 2.6311 0.0112 27 1 3.8378 -0.6864 0.6596 28 1 5.2863 0.3009 0.3509 29 1 2.7240 -1.7880 -1.1943 30 1 2.3223 -0.1433 -1.7439 31 1 3.1167 -1.2841 -2.8556 32 1 6.2998 -1.2088 -1.0110 33 1 5.0076 -2.4289 -0.9122 34 1 7.7994 -4.2155 -2.5177 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141332232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:53 Heat of formation + Delta-G solvation = -19.517170 kcal Electronic energy + Delta-G solvation = -18478.014999 eV Core-core repulsion = 15436.770578 eV Total energy + Delta-G solvation = -3041.244422 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.97696 -39.39770 -38.28394 -37.58577 -34.83169 -33.03020 -32.38082 -29.22972 -28.76285 -27.91207 -25.89907 -24.10533 -23.47931 -21.84491 -19.51354 -18.61167 -18.37944 -17.41959 -16.80027 -16.46425 -16.31603 -15.71429 -15.54293 -15.38196 -15.20525 -15.16223 -14.25513 -13.75923 -13.52415 -13.12536 -13.02086 -12.75341 -12.66140 -12.59938 -12.46861 -12.38640 -12.20322 -11.98732 -11.77051 -11.33251 -10.76810 -10.59654 -10.18338 -9.82906 -8.99668 -8.18671 -6.28322 -0.19053 0.14165 0.70114 1.42423 1.43795 1.54572 2.10894 2.40703 2.51207 3.14055 3.39810 3.44944 3.61010 3.76981 3.99616 4.19911 4.27340 4.36325 4.41861 4.57163 4.61920 4.72296 4.76521 4.79397 4.93425 5.13117 5.21752 5.31594 5.35242 5.66089 6.05637 6.10599 6.32761 6.61453 6.67249 6.87247 7.41137 8.92263 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.028653 B = 0.004275 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.972159 B = 6548.620448 C = 6872.261862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.312 6.312 3 C 0.184 3.816 4 C -0.237 4.237 5 C 0.195 3.805 6 Cl -0.022 7.022 7 N -0.520 5.520 8 C 0.163 3.837 9 C -0.158 4.158 10 C 0.107 3.893 11 N -0.542 5.542 12 C 0.051 3.949 13 C 0.208 3.792 14 C -0.523 4.523 15 H 0.060 0.940 16 C 0.004 3.996 17 N -0.934 5.934 18 Si 0.967 3.033 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.266 1.266 22 H 0.119 0.881 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.176 0.824 26 H 0.185 0.815 27 H 0.036 0.964 28 H 0.085 0.915 29 H 0.011 0.989 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.010 0.990 33 H -0.036 1.036 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.544 11.496 6.311 20.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.223 6.223 3 C 0.130 3.870 4 C -0.259 4.259 5 C 0.031 3.969 6 Cl 0.006 6.994 7 N -0.235 5.235 8 C 0.008 3.992 9 C -0.162 4.162 10 C -0.021 4.021 11 N -0.266 5.266 12 C -0.097 4.097 13 C 0.082 3.918 14 C -0.561 4.561 15 H 0.078 0.922 16 C -0.194 4.194 17 N -0.574 5.574 18 Si 0.792 3.208 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.190 1.190 22 H 0.137 0.863 23 H 0.095 0.905 24 H 0.091 0.909 25 H 0.194 0.806 26 H 0.202 0.798 27 H 0.054 0.946 28 H 0.104 0.896 29 H 0.030 0.970 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.028 0.972 33 H -0.019 1.019 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.894 12.434 6.027 20.316 hybrid contribution -0.436 -1.706 -0.175 1.770 sum -15.330 10.727 5.852 19.605 Atomic orbital electron populations 1.23529 0.75742 1.06168 1.03121 1.86337 1.24158 1.25076 1.86718 1.19064 0.91581 0.85178 0.91215 1.21947 1.02982 0.89723 1.11231 1.21525 0.89761 0.87843 0.97774 1.98394 1.70585 1.34040 1.96366 1.67109 1.06033 1.33259 1.17051 1.22640 1.00733 0.84612 0.91237 1.20403 0.91722 0.97357 1.06676 1.20739 0.98730 0.92327 0.90348 1.62136 1.07619 1.35661 1.21226 1.22265 0.89911 0.98260 0.99245 1.19414 0.89692 0.86611 0.96130 1.21440 1.22892 1.18785 0.92968 0.92199 1.25861 0.95464 0.95951 1.02153 1.70078 1.27243 1.25667 1.34418 0.85416 0.78729 0.77275 0.79392 1.19866 1.20715 1.19042 0.86309 0.90466 0.90904 0.80638 0.79811 0.94631 0.89622 0.97028 0.90658 0.93472 0.97154 1.01868 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.84 113.37 1.12 1.23 16 2 O -0.31 -7.77 6.86 -90.63 -0.62 -8.40 16 3 C 0.18 4.86 5.45 22.76 0.12 4.99 16 4 C -0.24 -5.24 8.87 22.48 0.20 -5.04 16 5 C 0.20 4.89 7.27 84.63 0.62 5.51 16 6 Cl -0.02 -0.47 29.10 -2.72 -0.08 -0.55 16 7 N -0.52 -14.86 10.34 -186.92 -1.93 -16.79 16 8 C 0.16 4.61 10.82 84.60 0.92 5.53 16 9 C -0.16 -4.77 5.18 -19.68 -0.10 -4.87 16 10 C 0.11 3.81 5.01 85.56 0.43 4.24 16 11 N -0.54 -23.65 4.74 -931.63 -4.42 -28.07 16 12 C 0.05 2.04 7.94 127.69 1.01 3.06 16 13 C 0.21 11.06 4.72 85.56 0.40 11.47 16 14 C -0.52 -29.76 8.51 25.60 0.22 -29.54 16 15 H 0.06 3.38 7.10 -2.91 -0.02 3.36 16 16 C 0.00 0.21 5.46 84.65 0.46 0.68 16 17 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 18 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.08 0.81 7.71 -2.38 -0.02 0.79 16 24 H 0.07 0.87 7.71 -2.39 -0.02 0.85 16 25 H 0.18 2.67 6.46 -2.91 -0.02 2.65 16 26 H 0.19 4.56 8.04 -2.91 -0.02 4.54 16 27 H 0.04 1.29 7.90 -2.39 -0.02 1.27 16 28 H 0.09 2.92 7.80 -2.39 -0.02 2.90 16 29 H 0.01 0.45 7.96 -2.39 -0.02 0.43 16 30 H 0.08 2.60 4.62 -2.39 -0.01 2.59 16 31 H 0.05 2.03 6.86 -2.39 -0.02 2.01 16 32 H 0.01 0.59 7.93 -2.39 -0.02 0.57 16 33 H -0.04 -2.10 8.12 -2.39 -0.02 -2.12 16 34 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -66.71 298.94 1.76 -64.95 By element: Atomic # 1 Polarization: -0.14 SS G_CDS: 1.11 Total: 0.97 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 5.39 Total: -2.76 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -6.07 Total: -100.58 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.62 Total: -8.40 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.08 Total: -0.55 kcal Total: -66.71 1.76 -64.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141332232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.428 kcal (2) G-P(sol) polarization free energy of solvation -66.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds