Wall clock time and date at job start Mon Mar 30 2020 01:24:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35739 * 116.99692 * 2 1
4 4 C 1.39213 * 120.84145 * 0.02562 * 3 2 1
5 5 C 1.38127 * 119.07994 * 179.97438 * 4 3 2
6 6 Cl 1.73605 * 119.60132 * 179.97438 * 5 4 3
7 7 N 1.32061 * 120.79350 * 0.02562 * 5 4 3
8 8 C 1.31973 * 121.84242 * 359.65454 * 7 5 4
9 9 C 1.37954 * 120.83677 * 0.63310 * 8 7 5
10 10 C 1.50708 * 120.43930 * 179.68178 * 9 8 7
11 11 N 1.46902 * 109.46760 * 259.72437 * 10 9 8
12 12 C 1.46898 * 111.00283 * 293.95026 * 11 10 9
13 13 C 1.46906 * 110.99573 * 169.99885 * 11 10 9
14 14 C 1.50706 * 109.46929 * 190.00042 * 13 11 10
15 15 H 1.07998 * 119.99628 * 0.02562 * 14 13 11
16 16 C 1.37871 * 119.99847 * 179.97438 * 14 13 11
17 17 N 1.31523 * 120.00067 * 0.02562 * 16 14 13
18 18 Si 1.86794 * 119.99964 * 179.97438 * 16 14 13
19 19 H 1.48507 * 109.46747 * 90.00527 * 18 16 14
20 20 H 1.48504 * 109.47496 * 210.00106 * 18 16 14
21 21 H 1.48500 * 109.47352 * 330.00459 * 18 16 14
22 22 H 1.09001 * 109.47113 * 180.02562 * 1 2 3
23 23 H 1.09005 * 109.47106 * 300.00467 * 1 2 3
24 24 H 1.08999 * 109.47159 * 59.99778 * 1 2 3
25 25 H 1.08001 * 120.46454 * 359.97438 * 4 3 2
26 26 H 1.08008 * 119.58097 * 180.33881 * 8 7 5
27 27 H 1.08993 * 109.46930 * 139.72686 * 10 9 8
28 28 H 1.09000 * 109.47035 * 19.72026 * 10 9 8
29 29 H 1.08997 * 109.47334 * 296.05250 * 12 11 10
30 30 H 1.09000 * 109.46674 * 56.05127 * 12 11 10
31 31 H 1.08995 * 109.47296 * 176.04950 * 12 11 10
32 32 H 1.08998 * 109.47121 * 309.99709 * 13 11 10
33 33 H 1.09000 * 109.47141 * 69.99907 * 13 11 10
34 34 H 0.96995 * 119.99723 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0452 1.2095 0.0000
4 6 1.3042 2.3880 0.0005
5 6 1.9687 3.5989 0.0011
6 17 1.0580 5.0769 0.0011
7 7 3.2885 3.6458 0.0005
8 6 4.0241 2.5501 0.0063
9 6 3.4349 1.3027 0.0000
10 6 4.2837 0.0574 -0.0006
11 7 4.3607 -0.4820 -1.3648
12 6 3.0461 -0.9549 -1.8189
13 6 5.3639 -1.5516 -1.4521
14 6 5.5917 -1.9099 -2.8981
15 1 5.0461 -1.3942 -3.6745
16 6 6.4973 -2.8951 -3.2298
17 7 7.1620 -3.5226 -2.2842
18 14 6.7791 -3.3397 -5.0221
19 1 7.8698 -2.4973 -5.5754
20 1 7.1598 -4.7715 -5.1230
21 1 5.5318 -3.1036 -5.7927
22 1 -0.3633 -1.0277 0.0005
23 1 -0.3633 0.5139 0.8900
24 1 -0.3633 0.5139 -0.8900
25 1 0.2246 2.3560 0.0005
26 1 5.1012 2.6311 0.0112
27 1 3.8378 -0.6864 0.6596
28 1 5.2863 0.3009 0.3509
29 1 2.7240 -1.7880 -1.1943
30 1 2.3223 -0.1433 -1.7439
31 1 3.1167 -1.2841 -2.8556
32 1 6.2998 -1.2088 -1.0110
33 1 5.0076 -2.4289 -0.9122
34 1 7.7994 -4.2155 -2.5177
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001141332232.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:24:53
Heat of formation + Delta-G solvation = -19.517170 kcal
Electronic energy + Delta-G solvation = -18478.014999 eV
Core-core repulsion = 15436.770578 eV
Total energy + Delta-G solvation = -3041.244422 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 270.088 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-41.97696 -39.39770 -38.28394 -37.58577 -34.83169 -33.03020 -32.38082 -29.22972
-28.76285 -27.91207 -25.89907 -24.10533 -23.47931 -21.84491 -19.51354 -18.61167
-18.37944 -17.41959 -16.80027 -16.46425 -16.31603 -15.71429 -15.54293 -15.38196
-15.20525 -15.16223 -14.25513 -13.75923 -13.52415 -13.12536 -13.02086 -12.75341
-12.66140 -12.59938 -12.46861 -12.38640 -12.20322 -11.98732 -11.77051 -11.33251
-10.76810 -10.59654 -10.18338 -9.82906 -8.99668 -8.18671 -6.28322 -0.19053
0.14165 0.70114 1.42423 1.43795 1.54572 2.10894 2.40703 2.51207
3.14055 3.39810 3.44944 3.61010 3.76981 3.99616 4.19911 4.27340
4.36325 4.41861 4.57163 4.61920 4.72296 4.76521 4.79397 4.93425
5.13117 5.21752 5.31594 5.35242 5.66089 6.05637 6.10599 6.32761
6.61453 6.67249 6.87247 7.41137 8.92263
Molecular weight = 270.09amu
Principal moments of inertia in cm(-1)
A = 0.028653 B = 0.004275 C = 0.004073
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 976.972159 B = 6548.620448 C = 6872.261862
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.008 3.992
2 O -0.312 6.312
3 C 0.184 3.816
4 C -0.237 4.237
5 C 0.195 3.805
6 Cl -0.022 7.022
7 N -0.520 5.520
8 C 0.163 3.837
9 C -0.158 4.158
10 C 0.107 3.893
11 N -0.542 5.542
12 C 0.051 3.949
13 C 0.208 3.792
14 C -0.523 4.523
15 H 0.060 0.940
16 C 0.004 3.996
17 N -0.934 5.934
18 Si 0.967 3.033
19 H -0.273 1.273
20 H -0.282 1.282
21 H -0.266 1.266
22 H 0.119 0.881
23 H 0.077 0.923
24 H 0.072 0.928
25 H 0.176 0.824
26 H 0.185 0.815
27 H 0.036 0.964
28 H 0.085 0.915
29 H 0.011 0.989
30 H 0.075 0.925
31 H 0.046 0.954
32 H 0.010 0.990
33 H -0.036 1.036
34 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.544 11.496 6.311 20.338
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.086 4.086
2 O -0.223 6.223
3 C 0.130 3.870
4 C -0.259 4.259
5 C 0.031 3.969
6 Cl 0.006 6.994
7 N -0.235 5.235
8 C 0.008 3.992
9 C -0.162 4.162
10 C -0.021 4.021
11 N -0.266 5.266
12 C -0.097 4.097
13 C 0.082 3.918
14 C -0.561 4.561
15 H 0.078 0.922
16 C -0.194 4.194
17 N -0.574 5.574
18 Si 0.792 3.208
19 H -0.199 1.199
20 H -0.207 1.207
21 H -0.190 1.190
22 H 0.137 0.863
23 H 0.095 0.905
24 H 0.091 0.909
25 H 0.194 0.806
26 H 0.202 0.798
27 H 0.054 0.946
28 H 0.104 0.896
29 H 0.030 0.970
30 H 0.093 0.907
31 H 0.065 0.935
32 H 0.028 0.972
33 H -0.019 1.019
34 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -14.894 12.434 6.027 20.316
hybrid contribution -0.436 -1.706 -0.175 1.770
sum -15.330 10.727 5.852 19.605
Atomic orbital electron populations
1.23529 0.75742 1.06168 1.03121 1.86337 1.24158 1.25076 1.86718
1.19064 0.91581 0.85178 0.91215 1.21947 1.02982 0.89723 1.11231
1.21525 0.89761 0.87843 0.97774 1.98394 1.70585 1.34040 1.96366
1.67109 1.06033 1.33259 1.17051 1.22640 1.00733 0.84612 0.91237
1.20403 0.91722 0.97357 1.06676 1.20739 0.98730 0.92327 0.90348
1.62136 1.07619 1.35661 1.21226 1.22265 0.89911 0.98260 0.99245
1.19414 0.89692 0.86611 0.96130 1.21440 1.22892 1.18785 0.92968
0.92199 1.25861 0.95464 0.95951 1.02153 1.70078 1.27243 1.25667
1.34418 0.85416 0.78729 0.77275 0.79392 1.19866 1.20715 1.19042
0.86309 0.90466 0.90904 0.80638 0.79811 0.94631 0.89622 0.97028
0.90658 0.93472 0.97154 1.01868 0.92675
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.12 9.84 113.37 1.12 1.23 16
2 O -0.31 -7.77 6.86 -90.63 -0.62 -8.40 16
3 C 0.18 4.86 5.45 22.76 0.12 4.99 16
4 C -0.24 -5.24 8.87 22.48 0.20 -5.04 16
5 C 0.20 4.89 7.27 84.63 0.62 5.51 16
6 Cl -0.02 -0.47 29.10 -2.72 -0.08 -0.55 16
7 N -0.52 -14.86 10.34 -186.92 -1.93 -16.79 16
8 C 0.16 4.61 10.82 84.60 0.92 5.53 16
9 C -0.16 -4.77 5.18 -19.68 -0.10 -4.87 16
10 C 0.11 3.81 5.01 85.56 0.43 4.24 16
11 N -0.54 -23.65 4.74 -931.63 -4.42 -28.07 16
12 C 0.05 2.04 7.94 127.69 1.01 3.06 16
13 C 0.21 11.06 4.72 85.56 0.40 11.47 16
14 C -0.52 -29.76 8.51 25.60 0.22 -29.54 16
15 H 0.06 3.38 7.10 -2.91 -0.02 3.36 16
16 C 0.00 0.21 5.46 84.65 0.46 0.68 16
17 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16
18 Si 0.97 44.34 29.54 68.60 2.03 46.37 16
19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16
20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16
21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16
22 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16
23 H 0.08 0.81 7.71 -2.38 -0.02 0.79 16
24 H 0.07 0.87 7.71 -2.39 -0.02 0.85 16
25 H 0.18 2.67 6.46 -2.91 -0.02 2.65 16
26 H 0.19 4.56 8.04 -2.91 -0.02 4.54 16
27 H 0.04 1.29 7.90 -2.39 -0.02 1.27 16
28 H 0.09 2.92 7.80 -2.39 -0.02 2.90 16
29 H 0.01 0.45 7.96 -2.39 -0.02 0.43 16
30 H 0.08 2.60 4.62 -2.39 -0.01 2.59 16
31 H 0.05 2.03 6.86 -2.39 -0.02 2.01 16
32 H 0.01 0.59 7.93 -2.39 -0.02 0.57 16
33 H -0.04 -2.10 8.12 -2.39 -0.02 -2.12 16
34 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16
Total: -1.00 -66.71 298.94 1.76 -64.95
By element:
Atomic # 1 Polarization: -0.14 SS G_CDS: 1.11 Total: 0.97 kcal
Atomic # 6 Polarization: -8.15 SS G_CDS: 5.39 Total: -2.76 kcal
Atomic # 7 Polarization: -94.51 SS G_CDS: -6.07 Total: -100.58 kcal
Atomic # 8 Polarization: -7.77 SS G_CDS: -0.62 Total: -8.40 kcal
Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal
Atomic # 17 Polarization: -0.47 SS G_CDS: -0.08 Total: -0.55 kcal
Total: -66.71 1.76 -64.95 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001141332232.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.428 kcal
(2) G-P(sol) polarization free energy of solvation -66.707 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.278 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.761 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.945 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.517 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds