Wall clock time and date at job start Mon Mar 30 2020 00:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39365 * 120.12003 * 277.46140 * 3 2 1 5 5 C 1.38568 * 119.99160 * 179.97438 * 4 3 2 6 6 N 1.39459 * 119.88012 * 179.97438 * 5 4 3 7 7 C 1.39886 * 120.24114 * 359.96284 * 5 4 3 8 8 N 1.39814 * 119.87626 * 180.02562 * 7 5 4 9 9 C 1.34771 * 120.00030 * 145.22548 * 8 7 5 10 10 O 1.21285 * 120.00070 * 4.53177 * 9 8 7 11 11 C 1.50706 * 119.99992 * 184.53430 * 9 8 7 12 12 C 1.50693 * 109.47044 * 179.97438 * 11 9 8 13 13 H 1.08002 * 120.00271 * 0.02562 * 12 11 9 14 14 C 1.37876 * 119.99997 * 180.02562 * 12 11 9 15 15 N 1.31516 * 119.99880 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00162 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46961 * 90.00063 * 16 14 12 18 18 H 1.48500 * 109.47423 * 209.99904 * 16 14 12 19 19 H 1.48498 * 109.47263 * 330.00086 * 16 14 12 20 20 C 1.38439 * 120.24770 * 0.03437 * 7 5 4 21 21 C 1.39445 * 120.00676 * 359.97438 * 20 7 5 22 22 C 1.43195 * 120.12169 * 179.97438 * 21 20 7 23 23 N 3.55622 * 104.08426 * 97.45823 * 2 1 3 24 24 H 1.08001 * 120.00764 * 359.97438 * 4 3 2 25 25 H 0.96998 * 119.99690 * 179.97438 * 6 5 4 26 26 H 0.96993 * 120.00055 * 359.97068 * 6 5 4 27 27 H 0.97000 * 120.00017 * 325.21832 * 8 7 5 28 28 H 1.08997 * 109.47234 * 300.00041 * 11 9 8 29 29 H 1.09004 * 109.46784 * 60.00022 * 11 9 8 30 30 H 0.97004 * 119.99591 * 180.02562 * 15 14 12 31 31 H 1.08003 * 119.99625 * 179.71778 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2675 -0.1556 1.1953 5 6 4.6532 -0.1551 1.1921 6 7 5.3507 -0.3111 2.3896 7 6 5.3549 0.0010 -0.0079 8 7 6.7530 -0.0002 -0.0023 9 6 7.4306 -0.5370 -1.0363 10 8 6.8306 -0.9445 -2.0083 11 6 8.9338 -0.6308 -0.9847 12 6 9.4414 -1.2650 -2.2540 13 1 8.7451 -1.5693 -3.0215 14 6 10.7946 -1.4568 -2.4355 15 7 11.6424 -1.0868 -1.5006 16 14 11.4238 -2.2423 -4.0091 17 1 11.6906 -1.1854 -5.0176 18 1 12.6789 -2.9834 -3.7250 19 1 10.4023 -3.1826 -4.5359 20 6 4.6702 0.1569 -1.2010 21 6 3.2758 0.1582 -1.2097 22 6 2.5651 0.3198 -2.4423 23 7 2.0014 0.4477 -3.4201 24 1 2.7296 -0.2770 2.1239 25 1 6.3207 -0.3114 2.3893 26 1 4.8659 -0.4192 3.2227 27 1 7.2354 0.3855 0.7457 28 1 9.3570 0.3685 -0.8830 29 1 9.2307 -1.2398 -0.1307 30 1 12.5945 -1.2214 -1.6285 31 1 5.2161 0.2817 -2.1245 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143200940.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:43 Heat of formation + Delta-G solvation = 49.283128 kcal Electronic energy + Delta-G solvation = -18709.872946 eV Core-core repulsion = 15570.504435 eV Total energy + Delta-G solvation = -3139.368511 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.68057 -38.73712 -37.01881 -36.45803 -34.74527 -34.18401 -33.11070 -30.80508 -29.61312 -28.59789 -24.75079 -23.69933 -23.14893 -20.16682 -19.78889 -18.70175 -17.59789 -16.77484 -16.52663 -15.78368 -15.36841 -14.86342 -14.73791 -14.47230 -14.24971 -13.94759 -13.52986 -13.40798 -13.09152 -13.02625 -12.98603 -12.78427 -12.38053 -12.25408 -11.83289 -11.48527 -10.91870 -10.80956 -10.73455 -10.22030 -10.09587 -9.44562 -9.02029 -8.64329 -8.55617 -7.60359 -6.19855 -4.20458 0.34800 0.96703 2.43551 2.63466 2.65743 2.99252 3.22384 3.28060 3.34295 3.36476 3.38067 3.43131 3.64345 3.86384 3.98833 4.38042 4.57391 5.01413 5.05671 5.19510 5.40665 5.55866 5.72580 5.91508 6.02885 6.25588 6.67845 6.92209 7.08588 7.10090 7.24951 7.35029 7.48415 7.60602 7.83585 8.11966 8.77348 8.90622 9.45912 10.92137 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.025654 B = 0.004265 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.168725 B = 6562.967383 C = 7508.938811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C 0.253 3.747 3 C 0.038 3.962 4 C -0.136 4.136 5 C 0.216 3.784 6 N -0.865 5.865 7 C 0.118 3.882 8 N -0.686 5.686 9 C 0.515 3.485 10 O -0.516 6.516 11 C 0.008 3.992 12 C -0.514 4.514 13 H 0.077 0.923 14 C 0.058 3.942 15 N -0.899 5.899 16 Si 0.902 3.098 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.271 1.271 20 C -0.034 4.034 21 C -0.021 4.021 22 C 0.256 3.744 23 N -0.414 5.414 24 H 0.143 0.857 25 H 0.403 0.597 26 H 0.404 0.596 27 H 0.407 0.593 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.263 0.737 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.571 3.657 12.131 15.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.085 5.085 2 C -0.062 4.062 3 C 0.031 3.969 4 C -0.162 4.162 5 C 0.107 3.893 6 N -0.404 5.404 7 C 0.017 3.983 8 N -0.333 5.333 9 C 0.307 3.693 10 O -0.389 6.389 11 C -0.031 4.031 12 C -0.552 4.552 13 H 0.095 0.905 14 C -0.144 4.144 15 N -0.538 5.538 16 Si 0.729 3.271 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.196 1.196 20 C -0.058 4.058 21 C -0.030 4.030 22 C -0.059 4.059 23 N -0.090 5.090 24 H 0.161 0.839 25 H 0.233 0.767 26 H 0.234 0.766 27 H 0.243 0.757 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -12.347 3.520 9.890 16.206 hybrid contribution 1.605 -0.346 0.403 1.690 sum -10.742 3.175 10.292 15.212 Atomic orbital electron populations 1.81244 1.11950 1.08308 1.06996 1.25584 0.92592 0.94043 0.93982 1.15412 0.83791 1.04808 0.92892 1.20151 0.91156 1.07790 0.97100 1.17472 0.90723 0.94753 0.86345 1.42348 1.09515 1.82529 1.06040 1.17329 0.84640 1.04294 0.91996 1.44018 1.02862 1.61092 1.25344 1.22429 0.92655 0.73854 0.80404 1.90565 1.70457 1.46097 1.31824 1.19286 0.83072 1.00002 1.00737 1.21121 0.92179 1.39820 1.02117 0.90491 1.24984 0.96757 0.95548 0.97078 1.69939 1.02709 1.47642 1.33535 0.86417 0.78163 0.79503 0.82987 1.20516 1.21222 1.19572 1.21153 0.90761 0.94589 0.99334 1.15455 0.91554 1.10327 0.85662 1.25462 0.93595 0.93837 0.92989 1.81220 1.08338 1.09044 1.10384 0.83935 0.76701 0.76623 0.75694 0.92898 0.92934 0.92731 0.81996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.72 18.54 41.84 0.78 -4.94 16 2 C 0.25 3.00 14.39 -22.47 -0.32 2.68 16 3 C 0.04 0.39 5.77 -106.49 -0.61 -0.22 16 4 C -0.14 -1.03 9.57 -39.04 -0.37 -1.41 16 5 C 0.22 1.79 6.76 -83.65 -0.57 1.22 16 6 N -0.86 -4.54 9.05 32.49 0.29 -4.25 16 7 C 0.12 1.36 6.32 -83.53 -0.53 0.83 16 8 N -0.69 -8.62 5.00 -9.75 -0.05 -8.67 16 9 C 0.51 9.48 7.66 -10.99 -0.08 9.40 16 10 O -0.52 -11.16 12.86 5.55 0.07 -11.09 16 11 C 0.01 0.18 5.46 -29.04 -0.16 0.02 16 12 C -0.51 -13.51 8.92 -34.44 -0.31 -13.82 16 13 H 0.08 2.12 6.75 -52.49 -0.35 1.77 16 14 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 15 N -0.90 -24.42 13.29 55.43 0.74 -23.69 16 16 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 C -0.03 -0.45 8.37 -39.06 -0.33 -0.78 16 21 C -0.02 -0.26 5.77 -106.46 -0.61 -0.87 16 22 C 0.26 3.73 14.39 -22.48 -0.32 3.41 16 23 N -0.41 -6.91 18.54 41.83 0.78 -6.14 16 24 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 25 H 0.40 1.97 7.39 -40.82 -0.30 1.66 16 26 H 0.40 1.15 8.83 -40.82 -0.36 0.79 16 27 H 0.41 3.76 7.67 -40.82 -0.31 3.45 16 28 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.16 2.50 6.18 -52.48 -0.32 2.18 16 LS Contribution 296.45 15.07 4.47 4.47 Total: -1.00 -32.23 296.45 -4.32 -36.55 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -2.06 Total: -0.01 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -4.32 Total: 1.90 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: 2.53 Total: -47.69 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.07 Total: -11.09 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.23 -4.32 -36.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143200940.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.833 kcal (2) G-P(sol) polarization free energy of solvation -32.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds