Wall clock time and date at job start Mon Mar 30 2020 00:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39365 * 120.12003 * 277.46140 * 3 2 1 5 5 C 1.38568 * 119.99160 * 179.97438 * 4 3 2 6 6 N 1.39459 * 119.88012 * 179.97438 * 5 4 3 7 7 C 1.39886 * 120.24114 * 359.96284 * 5 4 3 8 8 N 1.39814 * 119.87626 * 180.02562 * 7 5 4 9 9 C 1.34771 * 120.00030 * 145.22548 * 8 7 5 10 10 O 1.21285 * 120.00070 * 4.53177 * 9 8 7 11 11 C 1.50706 * 119.99992 * 184.53430 * 9 8 7 12 12 C 1.50693 * 109.47044 * 179.97438 * 11 9 8 13 13 H 1.08002 * 120.00271 * 0.02562 * 12 11 9 14 14 C 1.37876 * 119.99997 * 180.02562 * 12 11 9 15 15 N 1.31516 * 119.99880 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00162 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46961 * 90.00063 * 16 14 12 18 18 H 1.48500 * 109.47423 * 209.99904 * 16 14 12 19 19 H 1.48498 * 109.47263 * 330.00086 * 16 14 12 20 20 C 1.38439 * 120.24770 * 0.03437 * 7 5 4 21 21 C 1.39445 * 120.00676 * 359.97438 * 20 7 5 22 22 C 1.43195 * 120.12169 * 179.97438 * 21 20 7 23 23 N 3.55622 * 104.08426 * 97.45823 * 2 1 3 24 24 H 1.08001 * 120.00764 * 359.97438 * 4 3 2 25 25 H 0.96998 * 119.99690 * 179.97438 * 6 5 4 26 26 H 0.96993 * 120.00055 * 359.97068 * 6 5 4 27 27 H 0.97000 * 120.00017 * 325.21832 * 8 7 5 28 28 H 1.08997 * 109.47234 * 300.00041 * 11 9 8 29 29 H 1.09004 * 109.46784 * 60.00022 * 11 9 8 30 30 H 0.97004 * 119.99591 * 180.02562 * 15 14 12 31 31 H 1.08003 * 119.99625 * 179.71778 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2675 -0.1556 1.1953 5 6 4.6532 -0.1551 1.1921 6 7 5.3507 -0.3111 2.3896 7 6 5.3549 0.0010 -0.0079 8 7 6.7530 -0.0002 -0.0023 9 6 7.4306 -0.5370 -1.0363 10 8 6.8306 -0.9445 -2.0083 11 6 8.9338 -0.6308 -0.9847 12 6 9.4414 -1.2650 -2.2540 13 1 8.7451 -1.5693 -3.0215 14 6 10.7946 -1.4568 -2.4355 15 7 11.6424 -1.0868 -1.5006 16 14 11.4238 -2.2423 -4.0091 17 1 11.6906 -1.1854 -5.0176 18 1 12.6789 -2.9834 -3.7250 19 1 10.4023 -3.1826 -4.5359 20 6 4.6702 0.1569 -1.2010 21 6 3.2758 0.1582 -1.2097 22 6 2.5651 0.3198 -2.4423 23 7 2.0014 0.4477 -3.4201 24 1 2.7296 -0.2770 2.1239 25 1 6.3207 -0.3114 2.3893 26 1 4.8659 -0.4192 3.2227 27 1 7.2354 0.3855 0.7457 28 1 9.3570 0.3685 -0.8830 29 1 9.2307 -1.2398 -0.1307 30 1 12.5945 -1.2214 -1.6285 31 1 5.2161 0.2817 -2.1245 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143200940.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:43 Heat of formation + Delta-G solvation = 26.474016 kcal Electronic energy + Delta-G solvation = -18710.862023 eV Core-core repulsion = 15570.504435 eV Total energy + Delta-G solvation = -3140.357588 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.71120 -39.96611 -38.06266 -37.55929 -35.73746 -35.24520 -35.01279 -31.98009 -30.76900 -29.87950 -26.21604 -24.68496 -24.44891 -21.45826 -20.75817 -19.69061 -18.49136 -18.43183 -17.57753 -17.21414 -16.52152 -16.40621 -15.68258 -15.57710 -15.52638 -14.99008 -14.63435 -14.53327 -14.46984 -14.16400 -14.10746 -14.01202 -13.74266 -13.42223 -13.18551 -12.80162 -12.77551 -12.56456 -12.01564 -11.60756 -11.40317 -11.33748 -10.57540 -10.49807 -9.56849 -8.39543 -8.21891 -6.26826 -0.56304 0.09637 1.43261 1.45203 1.47444 1.53188 1.56124 1.60330 1.95110 2.00644 2.19773 2.47908 2.56190 2.74380 2.91674 3.11133 3.15394 3.78014 4.09647 4.22796 4.38108 4.59199 4.87109 4.90937 5.07734 5.16281 5.32771 5.35397 5.68043 5.79030 6.08527 6.31409 6.35824 6.42315 6.61866 6.86813 6.95186 7.36245 7.47079 8.89467 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.025654 B = 0.004265 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.168725 B = 6562.967383 C = 7508.938811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.273 3.727 3 C 0.054 3.946 4 C -0.111 4.111 5 C 0.248 3.752 6 N -0.843 5.843 7 C 0.093 3.907 8 N -0.661 5.661 9 C 0.522 3.478 10 O -0.555 6.555 11 C 0.010 3.990 12 C -0.535 4.535 13 H 0.056 0.944 14 C 0.016 3.984 15 N -0.921 5.921 16 Si 0.953 3.047 17 H -0.276 1.276 18 H -0.277 1.277 19 H -0.276 1.276 20 C -0.037 4.037 21 C -0.040 4.040 22 C 0.272 3.728 23 N -0.465 5.465 24 H 0.186 0.814 25 H 0.410 0.590 26 H 0.423 0.577 27 H 0.425 0.575 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.266 0.734 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.779 3.557 15.015 18.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.042 4.042 3 C 0.046 3.954 4 C -0.137 4.137 5 C 0.135 3.865 6 N -0.382 5.382 7 C -0.007 4.007 8 N -0.309 5.309 9 C 0.313 3.687 10 O -0.432 6.432 11 C -0.030 4.030 12 C -0.573 4.573 13 H 0.074 0.926 14 C -0.183 4.183 15 N -0.561 5.561 16 Si 0.779 3.221 17 H -0.201 1.201 18 H -0.202 1.202 19 H -0.201 1.201 20 C -0.061 4.061 21 C -0.049 4.049 22 C -0.042 4.042 23 N -0.141 5.141 24 H 0.203 0.797 25 H 0.240 0.760 26 H 0.255 0.745 27 H 0.265 0.735 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.557 3.442 12.872 18.309 hybrid contribution 1.665 -0.296 -0.324 1.722 sum -10.892 3.146 12.547 16.910 Atomic orbital electron populations 1.81274 1.13104 1.09542 1.08164 1.25703 0.92661 0.92980 0.92886 1.15398 0.82871 1.04137 0.92982 1.20504 0.90651 1.05028 0.97533 1.17354 0.90848 0.92294 0.86004 1.42422 1.10062 1.80081 1.05674 1.17306 0.83587 1.06911 0.92895 1.43375 1.03586 1.59764 1.24194 1.21664 0.91569 0.74289 0.81210 1.90566 1.70797 1.48191 1.33637 1.19098 0.85761 0.99364 0.98740 1.21386 0.92244 1.40142 1.03534 0.92617 1.25616 0.97031 0.96096 0.99577 1.69991 1.02925 1.48447 1.34696 0.85624 0.77674 0.78724 0.80093 1.20135 1.20204 1.20123 1.20837 0.90996 0.95334 0.98975 1.15308 0.91040 1.13132 0.85395 1.25938 0.92706 0.92493 0.93087 1.81212 1.09952 1.11266 1.11694 0.79685 0.76001 0.74450 0.73539 0.93066 0.92766 0.92494 0.85090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -11.81 18.54 19.01 0.35 -11.46 16 2 C 0.27 5.90 14.39 88.33 1.27 7.17 16 3 C 0.05 0.94 5.77 -21.07 -0.12 0.82 16 4 C -0.11 -1.15 9.57 22.62 0.22 -0.94 16 5 C 0.25 3.00 6.76 38.41 0.26 3.26 16 6 N -0.84 -4.37 9.05 -51.11 -0.46 -4.83 16 7 C 0.09 1.94 6.32 38.31 0.24 2.19 16 8 N -0.66 -15.52 5.00 -303.14 -1.51 -17.04 16 9 C 0.52 19.23 7.66 87.66 0.67 19.90 16 10 O -0.56 -24.69 12.86 -3.05 -0.04 -24.73 16 11 C 0.01 0.42 5.46 29.10 0.16 0.58 16 12 C -0.53 -28.62 8.92 25.60 0.23 -28.39 16 13 H 0.06 3.17 6.75 -2.91 -0.02 3.15 16 14 C 0.02 0.85 5.46 84.65 0.46 1.31 16 15 N -0.92 -49.91 13.29 21.45 0.28 -49.63 16 16 Si 0.95 43.06 29.54 68.60 2.03 45.08 16 17 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 18 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 C -0.04 -0.96 8.37 22.61 0.19 -0.77 16 21 C -0.04 -0.93 5.77 -21.06 -0.12 -1.06 16 22 C 0.27 8.12 14.39 88.33 1.27 9.39 16 23 N -0.46 -16.17 18.54 19.00 0.35 -15.81 16 24 H 0.19 0.51 8.06 -2.91 -0.02 0.49 16 25 H 0.41 1.98 7.39 -92.71 -0.69 1.29 16 26 H 0.42 -0.24 8.83 -92.71 -0.82 -1.06 16 27 H 0.43 6.71 7.67 -92.71 -0.71 6.00 16 28 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 31 H 0.13 4.28 6.18 -2.91 -0.02 4.26 16 Total: -1.00 -72.83 296.45 4.76 -68.06 By element: Atomic # 1 Polarization: -2.15 SS G_CDS: -0.96 Total: -3.11 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 4.73 Total: 13.47 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -0.99 Total: -98.77 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.04 Total: -24.73 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -72.83 4.76 -68.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143200940.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.538 kcal (2) G-P(sol) polarization free energy of solvation -72.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds