Wall clock time and date at job start Mon Mar 30 2020 01:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99735 * 2 1 4 4 H 1.48497 * 109.46914 * 269.99820 * 3 2 1 5 5 H 1.48506 * 109.47187 * 29.99610 * 3 2 1 6 6 H 1.48498 * 109.46852 * 149.99706 * 3 2 1 7 7 C 1.38806 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00179 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00055 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99884 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46788 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.46788 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99792 * 179.97438 * 12 11 10 14 14 O 1.21583 * 120.00286 * 0.02562 * 13 12 11 15 15 C 1.47544 * 119.99951 * 179.97438 * 13 12 11 16 16 C 1.39905 * 120.18711 * 270.00050 * 15 13 12 17 17 F 1.35097 * 120.09760 * 359.70289 * 16 15 13 18 18 C 1.38223 * 119.80441 * 179.97438 * 16 15 13 19 19 C 1.38302 * 120.19111 * 0.02562 * 18 16 15 20 20 C 1.38300 * 120.38208 * 359.95534 * 19 18 16 21 21 C 1.38226 * 120.19459 * 0.04583 * 20 19 18 22 22 F 1.35094 * 120.09926 * 179.97438 * 21 20 19 23 23 H 0.96998 * 120.00071 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99866 * 359.97438 * 9 7 2 25 25 H 1.08995 * 109.47340 * 60.00047 * 10 9 7 26 26 H 1.08998 * 109.46809 * 299.99408 * 10 9 7 27 27 H 1.08995 * 109.47232 * 59.99871 * 11 10 9 28 28 H 1.08998 * 109.46873 * 299.99259 * 11 10 9 29 29 H 0.97001 * 120.00250 * 359.97438 * 12 11 10 30 30 H 1.07999 * 119.90364 * 179.97438 * 18 16 15 31 31 H 1.07996 * 119.80831 * 180.02562 * 19 18 16 32 32 H 1.08006 * 119.90325 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0017 11 6 1.0639 -4.8197 0.0008 12 7 1.7965 -6.0884 0.0025 13 6 1.1226 -7.2556 0.0026 14 8 -0.0932 -7.2557 0.0008 15 6 1.8604 -8.5334 0.0038 16 6 2.2130 -9.1432 -1.2049 17 9 1.8738 -8.5669 -2.3788 18 6 2.9046 -10.3399 -1.1946 19 6 3.2475 -10.9347 0.0060 20 6 2.9032 -10.3385 1.2055 21 6 2.2116 -9.1418 1.2136 22 9 1.8758 -8.5613 2.3864 23 1 -0.4850 0.8400 -0.0004 24 1 0.3556 -2.3880 0.0005 25 1 2.6841 -3.7141 0.8921 26 1 2.6854 -3.7149 -0.8879 27 1 0.4383 -4.7622 -0.8899 28 1 0.4364 -4.7618 0.8901 29 1 2.7665 -6.0884 0.0036 30 1 3.1773 -10.8123 -2.1267 31 1 3.7882 -11.8696 0.0069 32 1 3.1752 -10.8096 2.1386 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148933584.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:54 Heat of formation + Delta-G solvation = -86.689779 kcal Electronic energy + Delta-G solvation = -19570.026735 eV Core-core repulsion = 15974.072810 eV Total energy + Delta-G solvation = -3595.953925 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.38390 -49.36279 -39.99243 -38.56175 -35.73431 -33.89577 -31.98111 -30.99746 -30.83037 -27.79041 -24.72209 -23.33298 -23.27430 -21.52904 -20.81297 -18.66924 -17.90005 -17.68530 -17.22086 -16.50071 -16.03858 -15.81265 -15.65088 -15.42165 -15.13024 -14.77956 -14.56567 -13.94457 -13.64261 -13.20219 -13.18940 -12.92002 -12.45593 -12.31694 -12.31564 -11.46421 -11.12658 -10.85819 -10.81188 -10.22845 -10.07068 -9.75483 -9.50437 -9.24267 -9.05470 -8.88132 -6.99920 -5.79472 -3.10515 0.33104 0.49443 2.38861 2.78254 3.05659 3.36240 3.42759 3.47470 3.49615 3.91385 4.16249 4.37749 4.42298 4.59195 4.62449 5.18298 5.28881 5.38999 5.49192 5.50250 5.50363 5.63510 5.75017 5.93032 6.10549 6.20876 6.39577 6.67919 6.68233 7.42733 7.65888 8.08717 8.37907 9.49243 10.03445 10.38422 11.43103 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.034299 B = 0.003398 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.159285 B = 8237.471332 C = 8419.888840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.729 5.729 10 C 0.145 3.855 11 C 0.109 3.891 12 N -0.707 5.707 13 C 0.561 3.439 14 O -0.519 6.519 15 C -0.196 4.196 16 C 0.164 3.836 17 F -0.119 7.119 18 C -0.166 4.166 19 C -0.047 4.047 20 C -0.166 4.166 21 C 0.164 3.836 22 F -0.119 7.119 23 H 0.257 0.743 24 H 0.386 0.614 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.402 0.598 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.120 -25.110 0.037 26.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.374 5.374 10 C 0.017 3.983 11 C -0.014 4.014 12 N -0.358 5.358 13 C 0.344 3.656 14 O -0.395 6.395 15 C -0.201 4.201 16 C 0.144 3.856 17 F -0.097 7.097 18 C -0.185 4.185 19 C -0.065 4.065 20 C -0.185 4.185 21 C 0.144 3.856 22 F -0.097 7.097 23 H 0.067 0.933 24 H 0.220 0.780 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.236 0.764 30 H 0.167 0.833 31 H 0.166 0.834 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 8.317 -24.882 0.045 26.235 hybrid contribution 0.462 1.153 -0.010 1.242 sum 8.778 -23.729 0.035 25.301 Atomic orbital electron populations 1.69670 1.05162 1.25874 1.57142 1.24785 0.95570 0.97834 1.02618 0.86139 0.78605 0.83555 0.77553 1.21608 1.21675 1.20686 1.19191 0.91049 0.83818 1.43513 0.91004 1.42184 1.06020 0.99508 1.89732 1.20753 0.93423 0.85580 0.98564 1.21690 0.95579 0.81166 1.02964 1.45902 1.10595 1.05702 1.73582 1.17699 0.87272 0.83092 0.77503 1.90849 1.12877 1.87117 1.48642 1.20040 1.07414 0.99935 0.92732 1.17341 0.96180 0.92189 0.79898 1.91601 1.89827 1.83909 1.44387 1.21193 1.01773 0.94857 1.00691 1.20995 0.96014 0.99204 0.90299 1.21195 1.01737 0.94880 1.00704 1.17339 0.96199 0.92153 0.79918 1.91600 1.89923 1.83718 1.44482 0.93337 0.77961 0.95660 0.95665 0.90849 0.90860 0.76373 0.83278 0.83365 0.83278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.50 13.06 55.49 0.72 -27.78 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.83 5.60 -59.91 -0.34 -19.16 16 10 C 0.15 2.91 6.37 -4.04 -0.03 2.88 16 11 C 0.11 1.96 5.79 -4.04 -0.02 1.94 16 12 N -0.71 -10.65 5.55 -61.35 -0.34 -10.99 16 13 C 0.56 9.06 6.54 -12.47 -0.08 8.98 16 14 O -0.52 -10.47 17.11 5.29 0.09 -10.38 16 15 C -0.20 -2.44 5.64 -104.86 -0.59 -3.03 16 16 C 0.16 1.74 7.29 -38.96 -0.28 1.46 16 17 F -0.12 -1.48 16.83 2.25 0.04 -1.45 16 18 C -0.17 -1.13 10.01 -39.56 -0.40 -1.53 16 19 C -0.05 -0.24 10.03 -39.53 -0.40 -0.64 16 20 C -0.17 -1.13 10.01 -39.56 -0.40 -1.53 16 21 C 0.16 1.74 7.29 -38.97 -0.28 1.46 16 22 F -0.12 -1.48 16.83 2.25 0.04 -1.45 16 23 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 24 H 0.39 10.54 7.67 -40.82 -0.31 10.23 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.40 4.89 8.46 -40.82 -0.35 4.55 16 30 H 0.15 0.65 8.06 -52.49 -0.42 0.22 16 31 H 0.15 0.25 8.06 -52.49 -0.42 -0.17 16 32 H 0.15 0.65 8.06 -52.48 -0.42 0.22 16 LS Contribution 299.32 15.07 4.51 4.51 Total: -1.00 -34.43 299.32 -6.19 -40.61 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -3.16 Total: 6.15 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -2.72 Total: 2.51 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.05 Total: -57.93 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.08 Total: -2.89 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.43 -6.19 -40.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148933584.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.076 kcal (2) G-P(sol) polarization free energy of solvation -34.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds