Wall clock time and date at job start Mon Mar 30 2020 01:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99735 * 2 1 4 4 H 1.48497 * 109.46914 * 269.99820 * 3 2 1 5 5 H 1.48506 * 109.47187 * 29.99610 * 3 2 1 6 6 H 1.48498 * 109.46852 * 149.99706 * 3 2 1 7 7 C 1.38806 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00179 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00055 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99884 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46788 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.46788 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99792 * 179.97438 * 12 11 10 14 14 O 1.21583 * 120.00286 * 0.02562 * 13 12 11 15 15 C 1.47544 * 119.99951 * 179.97438 * 13 12 11 16 16 C 1.39905 * 120.18711 * 270.00050 * 15 13 12 17 17 F 1.35097 * 120.09760 * 359.70289 * 16 15 13 18 18 C 1.38223 * 119.80441 * 179.97438 * 16 15 13 19 19 C 1.38302 * 120.19111 * 0.02562 * 18 16 15 20 20 C 1.38300 * 120.38208 * 359.95534 * 19 18 16 21 21 C 1.38226 * 120.19459 * 0.04583 * 20 19 18 22 22 F 1.35094 * 120.09926 * 179.97438 * 21 20 19 23 23 H 0.96998 * 120.00071 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99866 * 359.97438 * 9 7 2 25 25 H 1.08995 * 109.47340 * 60.00047 * 10 9 7 26 26 H 1.08998 * 109.46809 * 299.99408 * 10 9 7 27 27 H 1.08995 * 109.47232 * 59.99871 * 11 10 9 28 28 H 1.08998 * 109.46873 * 299.99259 * 11 10 9 29 29 H 0.97001 * 120.00250 * 359.97438 * 12 11 10 30 30 H 1.07999 * 119.90364 * 179.97438 * 18 16 15 31 31 H 1.07996 * 119.80831 * 180.02562 * 19 18 16 32 32 H 1.08006 * 119.90325 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0017 11 6 1.0639 -4.8197 0.0008 12 7 1.7965 -6.0884 0.0025 13 6 1.1226 -7.2556 0.0026 14 8 -0.0932 -7.2557 0.0008 15 6 1.8604 -8.5334 0.0038 16 6 2.2130 -9.1432 -1.2049 17 9 1.8738 -8.5669 -2.3788 18 6 2.9046 -10.3399 -1.1946 19 6 3.2475 -10.9347 0.0060 20 6 2.9032 -10.3385 1.2055 21 6 2.2116 -9.1418 1.2136 22 9 1.8758 -8.5613 2.3864 23 1 -0.4850 0.8400 -0.0004 24 1 0.3556 -2.3880 0.0005 25 1 2.6841 -3.7141 0.8921 26 1 2.6854 -3.7149 -0.8879 27 1 0.4383 -4.7622 -0.8899 28 1 0.4364 -4.7618 0.8901 29 1 2.7665 -6.0884 0.0036 30 1 3.1773 -10.8123 -2.1267 31 1 3.7882 -11.8696 0.0069 32 1 3.1752 -10.8096 2.1386 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148933584.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:54 Heat of formation + Delta-G solvation = -111.959252 kcal Electronic energy + Delta-G solvation = -19571.122502 eV Core-core repulsion = 15974.072810 eV Total energy + Delta-G solvation = -3597.049691 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.22023 -50.19716 -41.15143 -39.38059 -37.42587 -35.64289 -33.39620 -32.39451 -31.45256 -29.48005 -26.10194 -24.83756 -23.94731 -23.19072 -21.97961 -19.62295 -19.31588 -18.75374 -18.48083 -17.59099 -16.94549 -16.81794 -16.56519 -16.53234 -16.50461 -16.26417 -15.57965 -15.31735 -15.11568 -15.11208 -14.70947 -13.86307 -13.21644 -13.13894 -13.07669 -13.02266 -12.91390 -12.70480 -12.60807 -12.11705 -11.90513 -11.40923 -11.02793 -10.40536 -10.23248 -9.89213 -9.11021 -7.99210 -5.31674 -0.35736 -0.13219 1.14678 1.47154 1.50126 1.58529 1.80519 2.24868 2.55130 2.63053 3.25682 3.30053 3.34873 3.72237 3.73625 3.89146 4.08755 4.10558 4.12569 4.46205 4.58938 4.62223 4.87548 4.89495 4.98894 5.03606 5.11872 5.14804 5.45496 5.63229 6.18591 6.20902 6.84961 7.27228 7.97098 8.21275 9.24505 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.034299 B = 0.003398 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.159285 B = 8237.471332 C = 8419.888840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.076 4.076 3 Si 0.982 3.018 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.265 1.265 7 C -0.251 4.251 8 H 0.084 0.916 9 N -0.747 5.747 10 C 0.151 3.849 11 C 0.125 3.875 12 N -0.697 5.697 13 C 0.559 3.441 14 O -0.571 6.571 15 C -0.223 4.223 16 C 0.140 3.860 17 F -0.139 7.139 18 C -0.149 4.149 19 C -0.023 4.023 20 C -0.149 4.149 21 C 0.140 3.860 22 F -0.139 7.139 23 H 0.253 0.747 24 H 0.374 0.626 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.417 0.583 30 H 0.180 0.820 31 H 0.200 0.800 32 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.112 -27.567 0.053 30.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.810 3.190 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.189 1.189 7 C -0.383 4.383 8 H 0.102 0.898 9 N -0.390 5.390 10 C 0.024 3.976 11 C 0.001 3.999 12 N -0.348 5.348 13 C 0.345 3.655 14 O -0.450 6.450 15 C -0.228 4.228 16 C 0.120 3.880 17 F -0.117 7.117 18 C -0.168 4.168 19 C -0.040 4.040 20 C -0.168 4.168 21 C 0.120 3.880 22 F -0.117 7.117 23 H 0.062 0.938 24 H 0.206 0.794 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.255 0.745 30 H 0.198 0.802 31 H 0.217 0.783 32 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 11.389 -27.379 0.060 29.654 hybrid contribution -0.398 1.743 -0.016 1.788 sum 10.991 -25.636 0.043 27.893 Atomic orbital electron populations 1.69844 1.06902 1.26400 1.58962 1.25709 0.96465 1.01569 1.03116 0.85022 0.77697 0.78737 0.77547 1.21173 1.22209 1.18949 1.19659 0.91772 0.84767 1.42068 0.89832 1.42413 1.05766 1.01002 1.89857 1.20819 0.93415 0.83936 0.99434 1.21283 0.95019 0.82087 1.01535 1.45752 1.11259 1.04664 1.73118 1.18371 0.86932 0.84448 0.75775 1.90804 1.15274 1.88061 1.50899 1.19840 1.09627 0.98699 0.94648 1.17713 0.97927 0.93763 0.78589 1.91548 1.90343 1.84546 1.45271 1.21635 0.99438 0.92760 1.02946 1.21619 0.93899 0.99942 0.88548 1.21637 0.99403 0.92782 1.02960 1.17710 0.97946 0.93723 0.78610 1.91548 1.90435 1.84360 1.45360 0.93820 0.79412 0.94308 0.94304 0.92381 0.92392 0.74542 0.80215 0.78315 0.80212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.83 13.06 21.65 0.28 -60.55 16 2 C -0.08 -4.44 5.50 84.86 0.47 -3.98 16 3 Si 0.98 46.27 29.55 68.60 2.03 48.30 16 4 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.25 -14.19 9.99 84.03 0.84 -13.35 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.75 -39.23 5.60 -343.45 -1.92 -41.16 16 10 C 0.15 6.07 6.37 86.38 0.55 6.62 16 11 C 0.13 4.69 5.79 86.38 0.50 5.19 16 12 N -0.70 -21.66 5.55 -466.26 -2.59 -24.25 16 13 C 0.56 18.93 6.54 86.70 0.57 19.49 16 14 O -0.57 -24.56 17.11 -3.98 -0.07 -24.62 16 15 C -0.22 -5.56 5.64 -20.02 -0.11 -5.67 16 16 C 0.14 2.83 7.29 22.67 0.17 2.99 16 17 F -0.14 -3.48 16.83 44.97 0.76 -2.73 16 18 C -0.15 -1.45 10.01 22.28 0.22 -1.23 16 19 C -0.02 -0.11 10.03 22.30 0.22 0.11 16 20 C -0.15 -1.45 10.01 22.28 0.22 -1.23 16 21 C 0.14 2.83 7.29 22.67 0.17 2.99 16 22 F -0.14 -3.48 16.83 44.97 0.76 -2.72 16 23 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 24 H 0.37 21.20 7.67 -92.71 -0.71 20.48 16 25 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.42 10.19 8.46 -92.71 -0.78 9.40 16 30 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 31 H 0.20 -0.90 8.06 -2.91 -0.02 -0.92 16 32 H 0.18 0.66 8.06 -2.91 -0.02 0.63 16 Total: -1.00 -78.46 299.32 2.74 -75.72 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -0.32 Total: 20.06 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 3.81 Total: 11.95 kcal Atomic # 7 Polarization: -121.72 SS G_CDS: -4.23 Total: -125.95 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.07 Total: -24.62 kcal Atomic # 9 Polarization: -6.96 SS G_CDS: 1.51 Total: -5.45 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -78.46 2.74 -75.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148933584.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.242 kcal (2) G-P(sol) polarization free energy of solvation -78.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds