Wall clock time and date at job start Mon Mar 30 2020 01:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99815 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00308 * 3 2 1 5 5 H 1.48506 * 109.46994 * 30.00613 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00058 * 3 2 1 7 7 C 1.38817 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99815 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99709 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99757 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47198 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21583 * 120.00270 * 359.72083 * 13 12 11 15 15 C 1.47577 * 119.99657 * 179.72390 * 13 12 11 16 16 C 1.39735 * 120.14132 * 359.72117 * 15 13 12 17 17 C 1.37731 * 119.90119 * 179.74286 * 16 15 13 18 18 C 1.38762 * 120.19506 * 0.53604 * 17 16 15 19 19 F 1.35097 * 119.85950 * 179.76408 * 18 17 16 20 20 C 1.38494 * 120.28296 * 359.73707 * 18 17 16 21 21 C 1.38199 * 120.09370 * 359.97438 * 20 18 17 22 22 F 1.35103 * 120.09784 * 179.97438 * 21 20 18 23 23 H 0.96996 * 120.00458 * 359.97438 * 1 2 3 24 24 H 0.97000 * 119.99857 * 0.02562 * 9 7 2 25 25 H 1.08995 * 109.47424 * 60.00294 * 10 9 7 26 26 H 1.09006 * 109.46868 * 299.99845 * 10 9 7 27 27 H 1.09009 * 109.46730 * 59.99787 * 11 10 9 28 28 H 1.08998 * 109.46846 * 300.00332 * 11 10 9 29 29 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 30 30 H 1.08003 * 120.04759 * 0.02562 * 16 15 13 31 31 H 1.07998 * 119.90258 * 180.27136 * 17 16 15 32 32 H 1.07994 * 119.95509 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7002 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8198 -0.0008 12 7 1.7965 -6.0884 -0.0025 13 6 1.1226 -7.2556 -0.0078 14 8 -0.0932 -7.2557 -0.0060 15 6 1.8606 -8.5336 -0.0157 16 6 3.2579 -8.5370 -0.0237 17 6 3.9417 -9.7326 -0.0257 18 6 3.2470 -10.9338 -0.0311 19 9 3.9245 -12.1025 -0.0378 20 6 1.8621 -10.9396 -0.0290 21 6 1.1641 -9.7469 -0.0209 22 9 -0.1870 -9.7525 -0.0194 23 1 -0.4850 0.8400 0.0004 24 1 0.3556 -2.3880 -0.0005 25 1 2.6855 -3.7149 0.8878 26 1 2.6841 -3.7140 -0.8922 27 1 0.4362 -4.7618 -0.8901 28 1 0.4384 -4.7622 0.8899 29 1 2.7665 -6.0883 -0.0044 30 1 3.8009 -7.6034 -0.0236 31 1 5.0216 -9.7352 -0.0274 32 1 1.3268 -11.8776 -0.0336 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149630099.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:04 Heat of formation + Delta-G solvation = -86.176235 kcal Electronic energy + Delta-G solvation = -19235.431188 eV Core-core repulsion = 15639.499532 eV Total energy + Delta-G solvation = -3595.931656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.52100 -49.20360 -40.17308 -38.39479 -35.76806 -33.97901 -31.93927 -31.16930 -30.79458 -27.73773 -24.52666 -23.76331 -23.06974 -21.55098 -20.77126 -18.76911 -17.94884 -17.62821 -17.10293 -16.44488 -16.10294 -15.74194 -15.67704 -15.24030 -15.01071 -14.81499 -14.55602 -14.00961 -13.82264 -13.40072 -13.20632 -12.92550 -12.71481 -12.35300 -11.98900 -11.50004 -11.14751 -10.86610 -10.83447 -10.17325 -10.04245 -9.77408 -9.63381 -9.26676 -9.02560 -8.87949 -7.02920 -5.82217 -3.13377 0.11903 0.52208 2.41809 3.00656 3.28558 3.35115 3.40634 3.45438 3.47582 3.88473 4.03194 4.31487 4.37213 4.55473 4.63923 5.14129 5.25170 5.41527 5.43777 5.46867 5.51105 5.51929 5.72555 5.90239 6.08719 6.19416 6.38078 6.64581 6.65792 7.44063 7.63034 8.13732 8.35150 9.46538 10.00787 10.35344 11.40304 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.040970 B = 0.003032 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.255535 B = 9231.852346 C = 9894.640531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.729 5.729 10 C 0.145 3.855 11 C 0.110 3.890 12 N -0.715 5.715 13 C 0.554 3.446 14 O -0.523 6.523 15 C -0.179 4.179 16 C -0.028 4.028 17 C -0.172 4.172 18 C 0.153 3.847 19 F -0.127 7.127 20 C -0.204 4.204 21 C 0.191 3.809 22 F -0.104 7.104 23 H 0.257 0.743 24 H 0.387 0.613 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.398 0.602 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.852 -23.158 -0.047 24.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.016 3.984 11 C -0.013 4.013 12 N -0.367 5.367 13 C 0.339 3.661 14 O -0.399 6.399 15 C -0.183 4.183 16 C -0.046 4.046 17 C -0.190 4.190 18 C 0.134 3.866 19 F -0.105 7.105 20 C -0.224 4.224 21 C 0.170 3.830 22 F -0.082 7.082 23 H 0.067 0.933 24 H 0.220 0.780 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.233 0.767 30 H 0.168 0.832 31 H 0.168 0.832 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 8.049 -23.030 -0.034 24.396 hybrid contribution 0.536 0.664 -0.017 0.854 sum 8.585 -22.366 -0.051 23.957 Atomic orbital electron populations 1.69662 1.05174 1.25918 1.57043 1.24788 0.95562 0.97851 1.02570 0.86148 0.78611 0.83569 0.77561 1.21603 1.21669 1.20681 1.19182 0.91033 0.83821 1.43632 0.91003 1.42184 1.06035 0.99523 1.89723 1.20757 0.93460 0.85671 0.98473 1.21652 0.95506 0.81169 1.02950 1.45801 1.10372 1.05839 1.74662 1.17820 0.87273 0.83259 0.77722 1.90875 1.12901 1.87268 1.48886 1.20243 0.94448 0.93378 1.10258 1.21119 0.91744 0.98767 0.93016 1.21148 1.01783 0.90507 1.05608 1.17507 0.89088 0.81667 0.98383 1.91559 1.79808 1.45944 1.93212 1.21030 0.93276 0.99004 1.09073 1.17276 0.77839 0.92095 0.95787 1.91651 1.27148 1.97091 1.92302 0.93307 0.77951 0.95730 0.95743 0.90937 0.90914 0.76662 0.83241 0.83190 0.82705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.05 13.06 55.49 0.72 -27.33 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.25 -6.77 9.99 -15.06 -0.15 -6.92 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.23 5.60 -59.91 -0.34 -18.56 16 10 C 0.14 2.72 6.37 -4.04 -0.03 2.70 16 11 C 0.11 1.84 5.79 -4.04 -0.02 1.81 16 12 N -0.71 -9.31 5.51 -61.33 -0.34 -9.64 16 13 C 0.55 7.97 7.76 -12.45 -0.10 7.88 16 14 O -0.52 -9.79 15.34 5.29 0.08 -9.71 16 15 C -0.18 -1.95 5.88 -104.91 -0.62 -2.57 16 16 C -0.03 -0.20 9.53 -39.21 -0.37 -0.57 16 17 C -0.17 -1.09 10.01 -39.57 -0.40 -1.49 16 18 C 0.15 1.17 7.30 -39.29 -0.29 0.88 16 19 F -0.13 -1.00 17.26 2.25 0.04 -0.97 16 20 C -0.20 -1.71 9.99 -39.50 -0.39 -2.11 16 21 C 0.19 2.12 7.28 -38.97 -0.28 1.83 16 22 F -0.10 -1.43 15.55 2.25 0.04 -1.39 16 23 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.39 10.26 7.67 -40.82 -0.31 9.95 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.40 3.78 6.50 -40.82 -0.27 3.51 16 30 H 0.15 0.69 6.40 -52.48 -0.34 0.36 16 31 H 0.15 0.59 8.06 -52.49 -0.42 0.16 16 32 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 293.99 15.07 4.43 4.43 Total: -1.00 -33.42 293.99 -6.13 -39.54 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -3.00 Total: 5.57 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -2.74 Total: 1.03 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: 0.05 Total: -55.54 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.07 Total: -2.36 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.42 -6.13 -39.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149630099.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.633 kcal (2) G-P(sol) polarization free energy of solvation -33.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds