Wall clock time and date at job start Mon Mar 30 2020 01:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99815 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00308 * 3 2 1 5 5 H 1.48506 * 109.46994 * 30.00613 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00058 * 3 2 1 7 7 C 1.38817 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99815 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99709 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99757 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47198 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21583 * 120.00270 * 359.72083 * 13 12 11 15 15 C 1.47577 * 119.99657 * 179.72390 * 13 12 11 16 16 C 1.39735 * 120.14132 * 359.72117 * 15 13 12 17 17 C 1.37731 * 119.90119 * 179.74286 * 16 15 13 18 18 C 1.38762 * 120.19506 * 0.53604 * 17 16 15 19 19 F 1.35097 * 119.85950 * 179.76408 * 18 17 16 20 20 C 1.38494 * 120.28296 * 359.73707 * 18 17 16 21 21 C 1.38199 * 120.09370 * 359.97438 * 20 18 17 22 22 F 1.35103 * 120.09784 * 179.97438 * 21 20 18 23 23 H 0.96996 * 120.00458 * 359.97438 * 1 2 3 24 24 H 0.97000 * 119.99857 * 0.02562 * 9 7 2 25 25 H 1.08995 * 109.47424 * 60.00294 * 10 9 7 26 26 H 1.09006 * 109.46868 * 299.99845 * 10 9 7 27 27 H 1.09009 * 109.46730 * 59.99787 * 11 10 9 28 28 H 1.08998 * 109.46846 * 300.00332 * 11 10 9 29 29 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 30 30 H 1.08003 * 120.04759 * 0.02562 * 16 15 13 31 31 H 1.07998 * 119.90258 * 180.27136 * 17 16 15 32 32 H 1.07994 * 119.95509 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7002 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8198 -0.0008 12 7 1.7965 -6.0884 -0.0025 13 6 1.1226 -7.2556 -0.0078 14 8 -0.0932 -7.2557 -0.0060 15 6 1.8606 -8.5336 -0.0157 16 6 3.2579 -8.5370 -0.0237 17 6 3.9417 -9.7326 -0.0257 18 6 3.2470 -10.9338 -0.0311 19 9 3.9245 -12.1025 -0.0378 20 6 1.8621 -10.9396 -0.0290 21 6 1.1641 -9.7469 -0.0209 22 9 -0.1870 -9.7525 -0.0194 23 1 -0.4850 0.8400 0.0004 24 1 0.3556 -2.3880 -0.0005 25 1 2.6855 -3.7149 0.8878 26 1 2.6841 -3.7140 -0.8922 27 1 0.4362 -4.7618 -0.8901 28 1 0.4384 -4.7622 0.8899 29 1 2.7665 -6.0883 -0.0044 30 1 3.8009 -7.6034 -0.0236 31 1 5.0216 -9.7352 -0.0274 32 1 1.3268 -11.8776 -0.0336 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149630099.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:03 Heat of formation + Delta-G solvation = -109.900381 kcal Electronic energy + Delta-G solvation = -19236.459944 eV Core-core repulsion = 15639.499532 eV Total energy + Delta-G solvation = -3596.960412 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.14037 -50.09921 -41.18932 -39.25224 -37.33516 -35.59586 -33.36707 -32.23601 -31.70379 -29.31775 -25.93283 -24.82251 -24.08755 -23.04680 -21.83979 -19.63106 -19.23677 -18.79297 -18.25998 -17.23856 -17.03071 -16.75322 -16.65883 -16.43068 -16.35206 -15.95144 -15.53509 -15.21848 -15.19074 -14.97240 -14.53142 -14.16990 -13.53744 -13.21178 -13.03331 -12.97208 -12.66390 -12.63082 -12.46543 -12.07161 -11.85971 -11.22217 -10.98118 -10.36849 -10.21529 -9.87511 -9.05602 -7.95802 -5.27244 -0.62300 -0.10738 1.49837 1.52207 1.54713 1.60548 1.89817 2.42181 2.58305 2.67624 3.18762 3.38894 3.42519 3.48801 3.77814 3.98362 4.00018 4.16550 4.21643 4.53788 4.59830 4.60997 4.77855 4.88238 4.90856 5.00949 5.14060 5.28751 5.50257 5.56072 6.24910 6.39714 7.06914 7.31221 8.03384 8.25543 9.28026 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.040970 B = 0.003032 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.255535 B = 9231.852346 C = 9894.640531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.979 3.021 4 H -0.286 1.286 5 H -0.298 1.298 6 H -0.264 1.264 7 C -0.247 4.247 8 H 0.086 0.914 9 N -0.749 5.749 10 C 0.149 3.851 11 C 0.127 3.873 12 N -0.699 5.699 13 C 0.552 3.448 14 O -0.576 6.576 15 C -0.196 4.196 16 C -0.014 4.014 17 C -0.154 4.154 18 C 0.157 3.843 19 F -0.125 7.125 20 C -0.200 4.200 21 C 0.164 3.836 22 F -0.130 7.130 23 H 0.252 0.748 24 H 0.373 0.627 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.419 0.581 30 H 0.181 0.819 31 H 0.186 0.814 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.348 -24.049 -0.040 27.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.807 3.193 4 H -0.213 1.213 5 H -0.225 1.225 6 H -0.188 1.188 7 C -0.378 4.378 8 H 0.104 0.896 9 N -0.392 5.392 10 C 0.022 3.978 11 C 0.002 3.998 12 N -0.352 5.352 13 C 0.340 3.660 14 O -0.457 6.457 15 C -0.200 4.200 16 C -0.032 4.032 17 C -0.172 4.172 18 C 0.137 3.863 19 F -0.104 7.104 20 C -0.219 4.219 21 C 0.143 3.857 22 F -0.108 7.108 23 H 0.061 0.939 24 H 0.205 0.795 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.258 0.742 30 H 0.198 0.802 31 H 0.204 0.796 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 11.638 -23.967 -0.027 26.643 hybrid contribution -0.450 0.782 -0.021 0.902 sum 11.188 -23.185 -0.049 25.744 Atomic orbital electron populations 1.69835 1.06908 1.26278 1.59239 1.25680 0.96401 1.01523 1.03427 0.85062 0.77761 0.78971 0.77459 1.21334 1.22509 1.18835 1.19667 0.91814 0.84765 1.41559 0.89630 1.42444 1.05793 1.01164 1.89805 1.20868 0.93485 0.83782 0.99652 1.21216 0.94961 0.82246 1.01374 1.45519 1.11229 1.04290 1.74142 1.18369 0.86857 0.84455 0.76319 1.90847 1.15404 1.88059 1.51360 1.20064 0.95849 0.91227 1.12858 1.21421 0.89908 1.00610 0.91279 1.21515 1.03403 0.89222 1.03069 1.17637 0.88739 0.82233 0.97668 1.91573 1.79620 1.46073 1.93091 1.21114 0.93889 0.98574 1.08336 1.17605 0.77057 0.93292 0.97760 1.91582 1.29091 1.97255 1.92842 0.93946 0.79515 0.94005 0.94004 0.92683 0.92655 0.74234 0.80156 0.79647 0.81398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.74 13.06 21.65 0.28 -59.45 16 2 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 3 Si 0.98 45.12 29.55 68.60 2.03 47.15 16 4 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 7 C -0.25 -13.36 9.99 84.03 0.84 -12.52 16 8 H 0.09 4.31 7.83 -2.91 -0.02 4.28 16 9 N -0.75 -37.28 5.60 -343.45 -1.92 -39.21 16 10 C 0.15 5.38 6.37 86.38 0.55 5.93 16 11 C 0.13 4.20 5.79 86.38 0.50 4.70 16 12 N -0.70 -17.28 5.51 -466.22 -2.57 -19.84 16 13 C 0.55 15.86 7.76 86.71 0.67 16.53 16 14 O -0.58 -22.58 15.34 -3.98 -0.06 -22.65 16 15 C -0.20 -4.04 5.88 -20.05 -0.12 -4.16 16 16 C -0.01 -0.15 9.53 22.51 0.21 0.06 16 17 C -0.15 -1.28 10.01 22.28 0.22 -1.06 16 18 C 0.16 1.91 7.30 22.46 0.16 2.08 16 19 F -0.13 -1.58 17.26 44.97 0.78 -0.81 16 20 C -0.20 -3.06 9.99 22.32 0.22 -2.84 16 21 C 0.16 3.60 7.28 22.66 0.17 3.77 16 22 F -0.13 -3.76 15.55 44.97 0.70 -3.06 16 23 H 0.25 15.00 8.31 -92.71 -0.77 14.22 16 24 H 0.37 20.30 7.67 -92.71 -0.71 19.59 16 25 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.42 6.65 6.50 -92.71 -0.60 6.04 16 30 H 0.18 0.77 6.40 -2.91 -0.02 0.75 16 31 H 0.19 0.32 8.06 -2.91 -0.02 0.30 16 32 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -74.48 293.99 3.01 -71.48 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -0.13 Total: 17.87 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 3.90 Total: 8.52 kcal Atomic # 7 Polarization: -114.30 SS G_CDS: -4.21 Total: -118.51 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.06 Total: -22.65 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 1.48 Total: -3.86 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -74.48 3.01 -71.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149630099.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.424 kcal (2) G-P(sol) polarization free energy of solvation -74.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds