Wall clock time and date at job start Mon Mar 30 2020 00:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31234 * 124.05554 * 2 1 4 4 N 1.27344 * 120.03768 * 179.97438 * 3 2 1 5 5 S 1.56637 * 109.73894 * 359.97438 * 4 3 2 6 6 C 1.38246 * 124.05260 * 179.97438 * 2 1 3 7 7 C 1.47168 * 128.48123 * 0.03721 * 6 2 1 8 8 O 1.21628 * 119.99507 * 359.97418 * 7 6 2 9 9 N 1.34769 * 120.00322 * 179.97438 * 7 6 2 10 10 C 1.46505 * 120.00306 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47445 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46957 * 179.97438 * 11 10 9 13 13 N 1.46502 * 109.46937 * 179.97438 * 12 11 10 14 14 C 1.36935 * 120.00035 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99906 * 359.97438 * 14 13 12 16 16 C 1.38810 * 119.99951 * 179.97438 * 14 13 12 17 17 N 1.31618 * 119.99975 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99837 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46845 * 60.00334 * 18 16 14 20 20 H 1.48500 * 109.46808 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47282 * 300.00229 * 18 16 14 22 22 H 1.08994 * 109.47128 * 270.04273 * 1 2 3 23 23 H 1.08997 * 109.46991 * 30.04797 * 1 2 3 24 24 H 1.09001 * 109.46861 * 150.04584 * 1 2 3 25 25 H 0.96998 * 119.99999 * 359.97438 * 9 7 6 26 26 H 1.08997 * 109.46770 * 299.99869 * 10 9 7 27 27 H 1.09002 * 109.47034 * 59.99106 * 10 9 7 28 28 H 1.08997 * 109.46721 * 300.00085 * 11 10 9 29 29 H 1.08996 * 109.46920 * 59.99719 * 11 10 9 30 30 H 1.08997 * 109.47226 * 300.00021 * 12 11 10 31 31 H 1.09004 * 109.46708 * 60.00236 * 12 11 10 32 32 H 0.97000 * 119.99700 * 359.97438 * 13 12 11 33 33 H 0.97006 * 119.99991 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5123 0.9980 0.0005 5 16 3.9367 -0.5097 0.0017 6 6 2.2812 -1.1454 0.0005 7 6 1.8394 -2.5492 0.0004 8 8 0.6521 -2.8131 0.0002 9 7 2.7505 -3.5424 0.0004 10 6 2.3107 -4.9399 -0.0002 11 6 3.5336 -5.8594 -0.0007 12 6 3.0742 -7.3188 -0.0007 13 7 4.2452 -8.1993 -0.0018 14 6 4.0797 -9.5586 -0.0026 15 1 3.0860 -9.9816 -0.0020 16 6 5.1892 -10.3928 -0.0041 17 7 6.4002 -9.8773 -0.0042 18 14 4.9634 -12.2472 -0.0044 19 1 4.2074 -12.6535 -1.2162 20 1 6.2934 -12.9077 -0.0055 21 1 4.2100 -12.6543 1.2087 22 1 -0.3633 0.0008 1.0276 23 1 -0.3633 0.8895 -0.5146 24 1 -0.3633 -0.8904 -0.5131 25 1 3.6973 -3.3319 0.0002 26 1 1.7112 -5.1325 0.8894 27 1 1.7118 -5.1319 -0.8905 28 1 4.1328 -5.6666 -0.8905 29 1 4.1328 -5.6674 0.8894 30 1 2.4753 -7.5112 0.8893 31 1 2.4748 -7.5109 -0.8907 32 1 5.1377 -7.8193 -0.0027 33 1 7.1755 -10.4602 -0.0049 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154521076.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:26 Heat of formation + Delta-G solvation = 38.502984 kcal Electronic energy + Delta-G solvation = -17258.431403 eV Core-core repulsion = 14254.039381 eV Total energy + Delta-G solvation = -3004.392021 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.31601 -39.75098 -36.23136 -34.52715 -33.62547 -32.14590 -30.04656 -28.54281 -27.29305 -25.38948 -23.23382 -22.11001 -21.39111 -20.42185 -18.84512 -17.82987 -16.96795 -16.50171 -16.15345 -15.68467 -14.93674 -14.52247 -14.43415 -14.23920 -13.44800 -13.33362 -13.30478 -13.11716 -12.76139 -12.58913 -11.91963 -11.74530 -11.06523 -10.98309 -10.86430 -10.69463 -10.69079 -10.34125 -10.21643 -10.11475 -10.08068 -9.75269 -9.33004 -8.91922 -6.98592 -5.81284 -3.10615 -0.63713 0.44038 1.09627 1.57889 2.66374 2.70724 3.41991 3.46308 3.47329 3.52099 4.19305 4.37237 4.54679 4.92256 4.99955 5.17893 5.26186 5.37912 5.49269 5.52834 5.74542 5.85088 5.93782 6.08775 6.17685 6.24049 6.70562 6.74875 7.06128 7.28986 7.65691 7.74789 8.37584 9.48783 10.05056 10.39534 11.41581 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.044491 B = 0.002847 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.193316 B = 9833.034468 C =10431.177972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.102 3.898 3 N -0.251 5.251 4 N -0.253 5.253 5 S 0.420 5.580 6 C -0.294 4.294 7 C 0.600 3.400 8 O -0.515 6.515 9 N -0.717 5.717 10 C 0.123 3.877 11 C -0.140 4.140 12 C 0.157 3.843 13 N -0.734 5.734 14 C -0.242 4.242 15 H 0.071 0.929 16 C -0.013 4.013 17 N -0.934 5.934 18 Si 0.909 3.091 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.285 1.285 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.102 0.898 25 H 0.400 0.600 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.023 0.977 31 H 0.022 0.978 32 H 0.384 0.616 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.232 20.429 -0.004 21.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.045 4.045 3 N -0.118 5.118 4 N -0.234 5.234 5 S 0.556 5.444 6 C -0.434 4.434 7 C 0.383 3.617 8 O -0.391 6.391 9 N -0.368 5.368 10 C 0.000 4.000 11 C -0.178 4.178 12 C 0.029 3.971 13 N -0.378 5.378 14 C -0.373 4.373 15 H 0.089 0.911 16 C -0.209 4.209 17 N -0.583 5.583 18 Si 0.740 3.260 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 H 0.108 0.892 23 H 0.102 0.898 24 H 0.121 0.879 25 H 0.234 0.766 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.217 0.783 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.521 21.173 -0.003 22.155 hybrid contribution -0.417 -1.353 0.018 1.416 sum -6.938 19.821 0.015 21.000 Atomic orbital electron populations 1.20549 0.83671 1.05089 1.04465 1.22985 1.00288 0.85005 0.96267 1.70635 0.96915 1.27990 1.16226 1.78883 1.09459 1.15704 1.19315 1.82636 1.09647 1.01469 1.50608 1.27808 0.98185 1.00104 1.17337 1.16416 0.86034 0.81892 0.77319 1.90826 1.15726 1.83026 1.49525 1.45976 1.09352 1.06955 1.74507 1.21498 0.97843 0.77566 1.03117 1.21977 0.96676 0.96174 1.02986 1.20510 0.91346 0.86955 0.98322 1.42321 1.03170 1.02645 1.89678 1.19193 0.92713 0.82462 1.42979 0.91118 1.24754 0.95201 0.98135 1.02857 1.69647 0.96901 1.34120 1.57627 0.86240 0.76580 0.85291 0.77912 1.21197 1.21648 1.21203 0.89230 0.89834 0.87939 0.76557 0.90653 0.90663 0.91076 0.91080 0.95959 0.95972 0.78275 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 9.90 36.01 0.36 -0.28 16 2 C 0.10 1.05 7.00 -82.84 -0.58 0.47 16 3 N -0.25 -2.86 11.54 33.42 0.39 -2.48 16 4 N -0.25 -2.74 12.51 60.35 0.75 -1.98 16 5 S 0.42 3.40 23.05 -107.50 -2.48 0.92 16 6 C -0.29 -2.93 6.81 -35.95 -0.24 -3.17 16 7 C 0.60 6.83 7.80 -12.64 -0.10 6.73 16 8 O -0.51 -7.19 14.89 5.25 0.08 -7.11 16 9 N -0.72 -7.30 5.55 -61.46 -0.34 -7.64 16 10 C 0.12 1.45 5.67 -4.04 -0.02 1.43 16 11 C -0.14 -1.93 5.44 -26.73 -0.15 -2.08 16 12 C 0.16 2.94 6.26 -4.04 -0.03 2.92 16 13 N -0.73 -18.05 5.60 -59.91 -0.34 -18.39 16 14 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 17 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 18 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 22 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.10 0.93 6.47 -51.93 -0.34 0.59 16 25 H 0.40 3.18 7.90 -40.82 -0.32 2.85 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.38 9.81 7.67 -40.82 -0.31 9.50 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 304.76 15.07 4.59 4.59 Total: -1.00 -32.51 304.76 -6.55 -39.06 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -3.90 Total: 4.34 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -1.01 Total: -1.31 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: 1.19 Total: -57.57 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: 0.08 Total: -7.11 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -2.48 Total: 0.92 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.51 -6.55 -39.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154521076.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.560 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds