Wall clock time and date at job start Mon Mar 30 2020 01:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.53000 * 109.46886 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.46726 * 180.02562 * 4 3 2 6 6 C 1.35958 * 116.99807 * 180.02562 * 5 4 3 7 7 C 1.38672 * 120.38142 * 359.97438 * 6 5 4 8 8 N 1.31868 * 120.80890 * 179.97438 * 7 6 5 9 9 C 1.32457 * 121.69040 * 0.02562 * 8 7 6 10 10 N 1.38986 * 119.65946 * 179.97438 * 9 8 7 11 11 C 1.36880 * 119.99855 * 359.97438 * 10 9 8 12 12 H 1.07998 * 120.00257 * 0.02562 * 11 10 9 13 13 C 1.38776 * 119.99828 * 180.02562 * 11 10 9 14 14 N 1.31599 * 120.00279 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99977 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46960 * 60.00054 * 15 13 11 17 17 H 1.48504 * 109.47056 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46952 * 300.00249 * 15 13 11 19 19 C 1.39299 * 120.68151 * 0.02562 * 9 8 7 20 20 Cl 1.73601 * 120.43439 * 179.97438 * 19 9 8 21 21 C 1.38393 * 119.12921 * 359.68148 * 19 9 8 22 22 H 1.09001 * 109.47583 * 60.00267 * 1 2 3 23 23 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47098 * 299.99158 * 1 2 3 25 25 H 1.09001 * 109.46741 * 240.00394 * 2 1 3 26 26 H 1.09002 * 109.47398 * 120.00496 * 2 1 3 27 27 H 1.09001 * 109.46652 * 60.00345 * 3 2 1 28 28 H 1.08992 * 109.47514 * 300.00434 * 3 2 1 29 29 H 1.09002 * 109.47398 * 300.00496 * 4 3 2 30 30 H 1.09001 * 109.47194 * 60.00677 * 4 3 2 31 31 H 1.07998 * 119.59402 * 0.03257 * 7 6 5 32 32 H 0.97001 * 120.00052 * 180.02562 * 10 9 8 33 33 H 0.96997 * 120.00270 * 179.97438 * 14 13 11 34 34 H 1.08000 * 120.77810 * 180.29141 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 8 4.0462 2.7899 0.0000 6 6 5.3941 2.9680 -0.0010 7 6 6.2461 1.8740 -0.0020 8 7 7.5547 2.0371 -0.0035 9 6 8.1058 3.2415 -0.0036 10 7 9.4902 3.3644 -0.0047 11 6 10.2767 2.2441 -0.0051 12 1 9.8216 1.2647 -0.0050 13 6 11.6591 2.3668 -0.0056 14 7 12.2138 3.5602 -0.0052 15 14 12.7325 0.8380 -0.0069 16 1 12.4434 0.0313 -1.2197 17 1 14.1628 1.2374 -0.0066 18 1 12.4444 0.0300 1.2053 19 6 7.3122 4.3863 -0.0016 20 17 8.0413 5.9618 -0.0011 21 6 5.9349 4.2512 -0.0062 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9564 -0.8899 29 1 3.9337 0.9285 0.8891 30 1 3.9329 0.9289 -0.8909 31 1 5.8329 0.8762 -0.0026 32 1 9.8991 4.2440 -0.0044 33 1 13.1799 3.6460 -0.0052 34 1 5.2943 5.1207 -0.0095 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534428.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:05 Heat of formation + Delta-G solvation = -39.108295 kcal Electronic energy + Delta-G solvation = -17678.841590 eV Core-core repulsion = 14636.747634 eV Total energy + Delta-G solvation = -3042.093956 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.32477 -39.34535 -37.34483 -36.85271 -35.83193 -33.65821 -32.89399 -30.46260 -29.30074 -26.68619 -25.33410 -23.65240 -23.02879 -21.91721 -19.84859 -19.03744 -18.48523 -17.45453 -17.19480 -16.37192 -15.84080 -15.75961 -15.63161 -15.00544 -14.84450 -14.62258 -14.16417 -13.77379 -13.41145 -13.40518 -13.08991 -12.93103 -12.78165 -12.51695 -12.16188 -12.13074 -11.99659 -11.92936 -11.81106 -11.66075 -11.37390 -10.50122 -10.21220 -10.19073 -8.51717 -8.49108 -5.73586 0.25581 0.61566 1.25529 1.42597 1.50594 1.54416 2.27016 2.48020 2.78021 3.02659 3.29907 3.84530 3.94705 4.01507 4.04104 4.13215 4.28285 4.42800 4.49448 4.60771 4.74876 4.87699 4.94168 4.97266 5.01729 5.09712 5.29672 5.36028 5.38766 5.48812 5.54915 5.82976 6.57088 6.73025 7.03238 7.35758 7.76338 8.68269 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.020955 B = 0.004281 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.907439 B = 6538.270220 C = 7843.126513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.112 4.112 4 C 0.051 3.949 5 O -0.325 6.325 6 C -0.033 4.033 7 C 0.093 3.907 8 N -0.535 5.535 9 C 0.335 3.665 10 N -0.551 5.551 11 C -0.306 4.306 12 H 0.105 0.895 13 C -0.029 4.029 14 N -0.927 5.927 15 Si 1.003 2.997 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.267 1.267 19 C -0.173 4.173 20 Cl -0.071 7.071 21 C -0.038 4.038 22 H 0.055 0.945 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.177 0.823 32 H 0.405 0.595 33 H 0.277 0.723 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.481 -4.393 0.001 18.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.149 4.149 4 C -0.024 4.024 5 O -0.239 6.239 6 C -0.084 4.084 7 C -0.070 4.070 8 N -0.257 5.257 9 C 0.093 3.907 10 N -0.162 5.162 11 C -0.437 4.437 12 H 0.123 0.877 13 C -0.228 4.228 14 N -0.566 5.566 15 Si 0.826 3.174 16 H -0.192 1.192 17 H -0.203 1.203 18 H -0.192 1.192 19 C -0.211 4.211 20 Cl -0.043 7.043 21 C -0.064 4.064 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.194 0.806 32 H 0.242 0.758 33 H 0.087 0.913 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -16.550 -4.878 -0.001 17.254 hybrid contribution 0.635 0.736 -0.001 0.972 sum -15.915 -4.141 -0.002 16.445 Atomic orbital electron populations 1.21750 0.94717 1.02274 1.02105 1.21439 0.96752 0.94699 1.02881 1.21539 0.91377 0.98604 1.03408 1.22998 0.96219 0.81407 1.01762 1.85924 1.17160 1.30075 1.90742 1.19136 0.83911 0.93515 1.11883 1.22996 0.87716 0.99254 0.97021 1.67252 1.13356 1.22813 1.22277 1.18228 0.85946 0.88423 0.98110 1.41012 1.00524 1.09546 1.65079 1.20018 0.88425 0.88198 1.47040 0.87682 1.26253 0.98192 1.01412 0.96972 1.69791 1.12637 1.24175 1.50023 0.84824 0.76418 0.76889 0.79286 1.19155 1.20308 1.19166 1.20661 0.93074 0.85095 1.22239 1.98286 1.83245 1.25105 1.97630 1.20384 0.91390 0.96820 0.97812 0.92540 0.91816 0.92534 0.91272 0.91269 0.91103 0.91110 0.91779 0.91774 0.80642 0.75789 0.91335 0.82601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 71.98 0.71 -1.00 16 2 C -0.12 -1.57 5.93 30.59 0.18 -1.39 16 3 C -0.11 -1.87 5.58 30.59 0.17 -1.70 16 4 C 0.05 1.10 4.75 71.98 0.34 1.44 16 5 O -0.32 -9.51 10.15 -93.08 -0.94 -10.45 16 6 C -0.03 -1.14 6.71 22.62 0.15 -0.98 16 7 C 0.09 3.39 10.21 84.79 0.87 4.26 16 8 N -0.54 -24.35 9.08 -192.67 -1.75 -26.10 16 9 C 0.34 16.05 7.43 133.09 0.99 17.04 16 10 N -0.55 -29.21 5.38 -189.10 -1.02 -30.22 16 11 C -0.31 -16.85 9.70 84.03 0.82 -16.04 16 12 H 0.11 5.75 7.08 -2.91 -0.02 5.73 16 13 C -0.03 -1.55 5.50 84.86 0.47 -1.08 16 14 N -0.93 -51.58 13.05 21.64 0.28 -51.30 16 15 Si 1.00 42.16 29.55 68.60 2.03 44.19 16 16 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 17 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 18 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 19 C -0.17 -7.21 6.36 22.56 0.14 -7.07 16 20 Cl -0.07 -2.72 27.61 -2.72 -0.08 -2.80 16 21 C -0.04 -1.35 9.92 22.55 0.22 -1.13 16 22 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.29 7.67 -2.39 -0.02 1.27 16 30 H 0.06 1.29 7.67 -2.39 -0.02 1.27 16 31 H 0.18 5.06 6.30 -2.91 -0.02 5.04 16 32 H 0.40 21.78 6.54 -92.71 -0.61 21.18 16 33 H 0.28 14.49 8.31 -92.71 -0.77 13.72 16 34 H 0.16 4.76 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -60.55 306.80 4.10 -56.46 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: 0.51 Total: 27.87 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 5.06 Total: -7.65 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -2.48 Total: -107.62 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -0.94 Total: -10.45 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 17 Polarization: -2.72 SS G_CDS: -0.08 Total: -2.80 kcal Total: -60.55 4.10 -56.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534428.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.348 kcal (2) G-P(sol) polarization free energy of solvation -60.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds