Wall clock time and date at job start Mon Mar 30 2020 01:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36884 * 119.99671 * 2 1 4 4 H 1.08002 * 119.99894 * 158.08532 * 3 2 1 5 5 C 1.39034 * 120.00235 * 338.07690 * 3 2 1 6 6 N 1.31376 * 119.99519 * 342.65421 * 5 3 2 7 7 Si 1.86791 * 120.00136 * 162.65239 * 5 3 2 8 8 H 1.48508 * 109.47187 * 94.98548 * 7 5 3 9 9 H 1.48500 * 109.47322 * 214.98225 * 7 5 3 10 10 H 1.48494 * 109.47276 * 334.98801 * 7 5 3 11 11 C 1.34773 * 120.00521 * 180.26521 * 2 1 3 12 12 O 1.21639 * 120.00485 * 185.39953 * 11 2 1 13 13 C 1.47289 * 119.99581 * 5.40918 * 11 2 1 14 14 N 1.31690 * 126.80532 * 4.44751 * 13 11 2 15 15 N 1.28365 * 111.98038 * 179.87663 * 14 13 11 16 16 H 0.97000 * 124.38832 * 180.18081 * 15 14 13 17 17 C 1.37178 * 111.22274 * 0.41198 * 15 14 13 18 18 C 1.38806 * 134.53895 * 179.71857 * 17 15 14 19 19 C 1.39175 * 119.55562 * 180.02562 * 18 17 15 20 20 C 1.43200 * 119.79977 * 179.97438 * 19 18 17 21 21 N 9.16009 * 97.74012 * 179.97438 * 2 1 3 22 22 C 1.40282 * 120.39932 * 359.95903 * 19 18 17 23 23 C 1.36340 * 120.38338 * 0.04073 * 22 19 18 24 24 C 1.39384 * 119.85416 * 359.97438 * 23 22 19 25 25 H 1.09001 * 109.47132 * 95.00274 * 1 2 3 26 26 H 1.08997 * 109.47149 * 214.99971 * 1 2 3 27 27 H 1.09005 * 109.47456 * 335.00378 * 1 2 3 28 28 H 0.96997 * 119.99972 * 179.97438 * 6 5 3 29 29 H 1.08005 * 120.22108 * 0.02793 * 18 17 15 30 30 H 1.08010 * 119.80847 * 180.02562 * 22 19 18 31 31 H 1.08004 * 120.07529 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1855 0.0000 4 1 3.1708 1.2193 0.3491 5 6 1.5296 2.3460 -0.4495 6 7 0.4399 2.2682 -1.1794 7 14 2.2461 4.0156 -0.0158 8 1 3.1240 4.4796 -1.1201 9 1 1.1439 4.9908 0.1831 10 1 3.0400 3.9040 1.2341 11 6 2.1390 -1.1671 -0.0054 12 8 3.3513 -1.1699 0.0937 13 6 1.4075 -2.4393 -0.1315 14 7 0.1139 -2.5895 -0.3276 15 7 -0.2211 -3.8267 -0.3964 16 1 -1.1273 -4.1418 -0.5394 17 6 0.8677 -4.6457 -0.2363 18 6 1.0577 -6.0205 -0.2195 19 6 2.3366 -6.5345 -0.0268 20 6 2.5386 -7.9521 -0.0081 21 7 2.6987 -9.0766 0.0041 22 6 3.4292 -5.6723 0.1488 23 6 3.2504 -4.3208 0.1336 24 6 1.9752 -3.7916 -0.0580 25 1 -0.3633 -0.0896 -1.0238 26 1 -0.3633 -0.8418 0.5894 27 1 -0.3634 0.9314 0.4343 28 1 0.0073 3.0779 -1.4927 29 1 0.2187 -6.6870 -0.3552 30 1 4.4177 -6.0815 0.2973 31 1 4.0950 -3.6615 0.2698 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156883722.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:04 Heat of formation + Delta-G solvation = 81.969104 kcal Electronic energy + Delta-G solvation = -19258.569680 eV Core-core repulsion = 16120.618540 eV Total energy + Delta-G solvation = -3137.951140 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.44460 -40.06541 -39.28748 -37.22911 -36.64005 -33.94178 -33.28216 -31.56813 -31.02210 -28.23058 -26.88506 -25.23033 -24.16646 -23.91519 -20.74004 -20.01136 -18.88361 -18.81344 -17.86299 -17.26649 -16.84743 -16.60314 -15.97564 -15.87899 -15.52346 -14.91722 -14.89942 -14.67682 -14.39028 -13.85025 -13.70907 -13.48379 -13.30432 -13.13437 -12.86899 -12.65216 -12.42451 -12.19878 -12.08790 -11.67746 -11.13685 -10.98327 -10.60555 -9.84200 -9.69784 -9.10060 -8.38586 -5.95970 -0.50807 0.12488 0.91351 1.45005 1.45916 1.53073 1.59710 1.85088 1.86677 2.28105 2.47252 2.74818 2.84515 2.96784 3.15482 3.47806 3.53677 3.82645 4.03138 4.23714 4.39662 4.47976 4.79890 4.90430 5.00681 5.05970 5.26288 5.37452 5.43202 5.46107 5.64567 6.03771 6.17363 6.41833 6.45851 6.86010 7.12825 7.39917 7.98216 8.64954 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.045375 B = 0.004255 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.931429 B = 6579.454240 C = 7133.152199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.131 3.869 2 N -0.436 5.436 3 C -0.348 4.348 4 H 0.082 0.918 5 C 0.002 3.998 6 N -0.885 5.885 7 Si 0.993 3.007 8 H -0.274 1.274 9 H -0.266 1.266 10 H -0.267 1.267 11 C 0.502 3.498 12 O -0.618 6.618 13 C -0.001 4.001 14 N -0.209 5.209 15 N -0.397 5.397 16 H 0.465 0.535 17 C 0.062 3.938 18 C -0.038 4.038 19 C 0.001 3.999 20 C 0.290 3.710 21 N -0.453 5.453 22 C -0.085 4.085 23 C -0.057 4.057 24 C -0.110 4.110 25 H 0.043 0.957 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.277 0.723 29 H 0.179 0.821 30 H 0.161 0.839 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.384 -12.819 1.742 13.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.153 5.153 3 C -0.476 4.476 4 H 0.100 0.900 5 C -0.202 4.202 6 N -0.522 5.522 7 Si 0.816 3.184 8 H -0.199 1.199 9 H -0.191 1.191 10 H -0.192 1.192 11 C 0.291 3.709 12 O -0.505 6.505 13 C -0.169 4.169 14 N -0.040 5.040 15 N -0.119 5.119 16 H 0.315 0.685 17 C -0.052 4.052 18 C -0.062 4.062 19 C -0.005 4.005 20 C -0.025 4.025 21 N -0.129 5.129 22 C -0.106 4.106 23 C -0.077 4.077 24 C -0.118 4.118 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.196 0.804 30 H 0.179 0.821 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.730 -13.789 1.573 14.662 hybrid contribution 0.382 1.058 -0.051 1.126 sum -4.347 -12.731 1.522 13.539 Atomic orbital electron populations 1.21511 0.78816 1.00246 1.00692 1.43723 1.07138 1.04465 1.59932 1.19750 0.99532 0.85087 1.43272 0.90005 1.26191 0.96831 1.03156 0.94030 1.70100 1.20490 1.30995 1.30601 0.84933 0.78168 0.76420 0.78888 1.19948 1.19081 1.19166 1.17113 0.86314 0.82432 0.85002 1.90556 1.14383 1.86913 1.58621 1.22878 0.89580 0.94108 1.10378 1.73279 1.15545 1.01716 1.13419 1.43249 1.10616 1.00524 1.57559 0.68521 1.18949 0.87491 0.93376 1.05368 1.20170 0.97306 0.89963 0.98736 1.15571 0.94197 0.83919 1.06806 1.25373 0.92644 0.92007 0.92468 1.81299 1.08522 1.12838 1.10210 1.20854 0.99359 0.91001 0.99393 1.20256 0.95108 0.95363 0.96985 1.19898 0.95870 0.90658 1.05386 0.93853 0.91396 0.92555 0.91305 0.80396 0.82117 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.06 7.64 127.77 0.98 7.04 16 2 N -0.44 -23.29 3.01 -662.80 -1.99 -25.29 16 3 C -0.35 -19.79 9.29 84.10 0.78 -19.01 16 4 H 0.08 4.89 7.39 -2.91 -0.02 4.87 16 5 C 0.00 0.08 4.94 84.95 0.42 0.50 16 6 N -0.88 -46.54 10.96 21.68 0.24 -46.30 16 7 Si 0.99 41.32 29.59 68.60 2.03 43.35 16 8 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 9 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 10 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 11 C 0.50 25.94 7.61 86.62 0.66 26.60 16 12 O -0.62 -35.06 16.03 -4.15 -0.07 -35.12 16 13 C 0.00 -0.03 6.95 43.80 0.30 0.27 16 14 N -0.21 -7.03 8.86 -44.92 -0.40 -7.43 16 15 N -0.40 -9.04 6.85 -51.64 -0.35 -9.39 16 16 H 0.47 5.97 8.96 -220.04 -1.97 4.00 16 17 C 0.06 1.43 7.36 39.12 0.29 1.72 16 18 C -0.04 -0.59 9.77 22.63 0.22 -0.37 16 19 C 0.00 0.02 5.73 -21.31 -0.12 -0.10 16 20 C 0.29 5.44 15.30 88.33 1.35 6.80 16 21 N -0.45 -10.56 18.54 19.00 0.35 -10.21 16 22 C -0.08 -1.69 9.67 22.32 0.22 -1.48 16 23 C -0.06 -1.61 9.84 22.10 0.22 -1.39 16 24 C -0.11 -3.56 6.34 -20.07 -0.13 -3.69 16 25 H 0.04 2.07 7.90 -2.39 -0.02 2.05 16 26 H 0.07 2.76 5.90 -2.39 -0.01 2.74 16 27 H 0.06 2.71 6.70 -2.38 -0.02 2.70 16 28 H 0.28 13.48 8.31 -92.71 -0.77 12.71 16 29 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 30 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 31 H 0.13 4.17 7.61 -2.91 -0.02 4.15 16 Total: -1.00 -71.36 284.49 4.23 -67.13 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -0.76 Total: 6.37 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 5.18 Total: 16.89 kcal Atomic # 7 Polarization: -96.46 SS G_CDS: -2.16 Total: -98.62 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -0.07 Total: -35.12 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -71.36 4.23 -67.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156883722.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.104 kcal (2) G-P(sol) polarization free energy of solvation -71.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds