Wall clock time and date at job start Mon Mar 30 2020 01:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35681 * 116.99841 * 2 1 4 4 C 1.38725 * 119.63122 * 180.02562 * 3 2 1 5 5 C 1.38730 * 119.25667 * 180.25666 * 4 3 2 6 6 Cl 1.73601 * 120.72968 * 179.74696 * 5 4 3 7 7 C 1.38649 * 118.54182 * 359.49980 * 5 4 3 8 8 C 1.38921 * 119.20371 * 0.52061 * 7 5 4 9 9 N 1.39009 * 119.66138 * 179.70124 * 8 7 5 10 10 C 1.46497 * 120.00111 * 0.02562 * 9 8 7 11 11 C 1.52993 * 109.47449 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47573 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.47215 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00136 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99790 * 179.97438 * 13 12 11 16 16 N 1.31523 * 119.99847 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00238 * 359.97438 * 15 13 12 18 18 H 1.48508 * 109.46693 * 90.00008 * 17 15 13 19 19 H 1.48499 * 109.47072 * 210.00049 * 17 15 13 20 20 H 1.48498 * 109.46922 * 330.00509 * 17 15 13 21 21 N 1.32345 * 119.63191 * 0.02562 * 3 2 1 22 22 H 1.09000 * 109.47313 * 300.00089 * 1 2 3 23 23 H 1.08995 * 109.47120 * 59.99905 * 1 2 3 24 24 H 1.08996 * 109.46934 * 180.02562 * 1 2 3 25 25 H 1.08002 * 120.36787 * 359.97295 * 4 3 2 26 26 H 1.07997 * 120.39601 * 180.24261 * 7 5 4 27 27 H 0.96999 * 119.99719 * 180.02562 * 9 8 7 28 28 H 1.09006 * 109.46992 * 300.00417 * 10 9 8 29 29 H 1.09007 * 109.47317 * 59.99729 * 10 9 8 30 30 H 1.09004 * 109.46812 * 300.00260 * 11 10 9 31 31 H 1.08998 * 109.47284 * 59.99282 * 11 10 9 32 32 H 1.09004 * 109.47224 * 299.99959 * 12 11 10 33 33 H 1.09001 * 109.46917 * 59.99863 * 12 11 10 34 34 H 0.97001 * 119.99909 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4307 1.2727 -0.0005 5 6 4.0524 2.5129 0.0049 6 17 5.7840 2.6371 0.0110 7 6 3.2605 3.6509 0.0001 8 6 1.8780 3.5147 0.0010 9 7 1.0749 4.6493 0.0025 10 6 1.6873 5.9802 0.0025 11 6 0.5902 7.0464 0.0049 12 6 1.2297 8.4364 0.0042 13 6 0.1490 9.4866 0.0060 14 1 -0.8901 9.1922 0.0070 15 6 0.4868 10.8233 0.0063 16 7 -0.4564 11.7399 0.0083 17 14 2.2840 11.3326 0.0052 18 1 2.7592 11.4681 -1.3952 19 1 2.4302 12.6338 0.7057 20 1 3.0913 10.3006 0.7042 21 7 1.3170 2.3142 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 4.0190 0.3669 -0.0005 26 1 3.7130 4.6315 0.0001 27 1 0.1091 4.5598 0.0036 28 1 2.3070 6.0949 0.8918 29 1 2.3050 6.0959 -0.8882 30 1 -0.0299 6.9317 -0.8842 31 1 -0.0272 6.9305 0.8957 32 1 1.8500 8.5513 0.8931 33 1 1.8467 8.5519 -0.8868 34 1 -0.2188 12.6804 0.0082 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157641356.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:05 Heat of formation + Delta-G solvation = -36.267360 kcal Electronic energy + Delta-G solvation = -17488.389036 eV Core-core repulsion = 14446.418272 eV Total energy + Delta-G solvation = -3041.970764 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.71325 -39.39594 -37.97724 -37.19313 -35.36270 -33.68045 -32.90069 -30.81102 -28.70878 -27.85399 -25.15105 -24.02358 -23.15361 -21.97342 -19.46294 -19.04981 -18.57488 -17.11718 -17.10012 -16.69588 -16.40832 -16.37503 -15.87381 -15.13775 -15.00467 -14.97155 -14.72613 -13.94719 -13.77845 -13.46242 -13.28029 -12.79646 -12.78733 -12.61604 -12.29991 -12.11822 -11.82768 -11.72573 -11.56267 -11.32319 -10.88133 -10.79467 -10.74772 -10.23851 -8.74747 -8.27960 -6.32749 0.06228 0.25493 0.80343 1.39704 1.41492 1.52964 1.93597 2.24786 2.38366 2.67399 3.08153 3.63557 3.90711 4.01096 4.08104 4.20972 4.21132 4.43601 4.44828 4.52537 4.60230 4.78313 4.84980 4.90144 5.01598 5.03413 5.06809 5.47087 5.57707 5.65964 5.86478 6.05647 6.28733 6.51139 6.76216 6.95645 7.32192 8.88840 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.021928 B = 0.003712 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.610247 B = 7541.629546 C = 8787.183679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.310 6.310 3 C 0.370 3.630 4 C -0.253 4.253 5 C 0.081 3.919 6 Cl -0.037 7.037 7 C -0.276 4.276 8 C 0.447 3.553 9 N -0.710 5.710 10 C 0.132 3.868 11 C -0.103 4.103 12 C -0.009 4.009 13 C -0.534 4.534 14 H 0.030 0.970 15 C 0.001 3.999 16 N -0.954 5.954 17 Si 0.952 3.048 18 H -0.267 1.267 19 H -0.288 1.288 20 H -0.239 1.239 21 N -0.609 5.609 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.126 0.874 25 H 0.162 0.838 26 H 0.153 0.847 27 H 0.409 0.591 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.027 0.973 33 H 0.026 0.974 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.869 -23.669 0.009 25.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.216 6.216 3 C 0.189 3.811 4 C -0.277 4.277 5 C 0.046 3.954 6 Cl -0.007 7.007 7 C -0.302 4.302 8 C 0.209 3.791 9 N -0.341 5.341 10 C 0.009 3.991 11 C -0.141 4.141 12 C -0.047 4.047 13 C -0.572 4.572 14 H 0.049 0.951 15 C -0.196 4.196 16 N -0.595 5.595 17 Si 0.775 3.225 18 H -0.192 1.192 19 H -0.214 1.214 20 H -0.162 1.162 21 N -0.344 5.344 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.144 0.856 25 H 0.179 0.821 26 H 0.171 0.829 27 H 0.245 0.755 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.296 -23.621 0.014 25.385 hybrid contribution 0.411 0.986 -0.022 1.069 sum 9.707 -22.635 -0.008 24.629 Atomic orbital electron populations 1.23070 0.75640 1.04768 1.02263 1.86243 1.24447 1.23599 1.87350 1.19322 0.88742 0.83956 0.89063 1.20620 0.91875 0.98455 1.16720 1.20582 0.85867 0.93406 0.95515 1.98395 1.07696 1.98388 1.96267 1.21236 0.91926 1.00079 1.16976 1.17794 0.87800 0.85330 0.88134 1.44736 1.08798 1.02270 1.78280 1.21557 0.96152 0.79086 1.02344 1.21462 0.97366 0.93573 1.01701 1.19450 0.95653 0.92334 0.97293 1.21503 0.93741 0.91603 1.50362 0.95113 1.26074 1.02700 0.96679 0.94120 1.70083 1.35387 1.01281 1.52751 0.85634 0.79558 0.78076 0.79243 1.19170 1.21445 1.16207 1.66641 1.41283 0.97844 1.28620 0.92616 0.92608 0.85595 0.82077 0.82916 0.75478 0.90837 0.90769 0.92424 0.92425 0.95430 0.95565 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.38 113.37 1.18 1.77 16 2 O -0.31 -6.63 10.47 -89.99 -0.94 -7.57 16 3 C 0.37 8.95 7.48 84.73 0.63 9.58 16 4 C -0.25 -5.50 9.85 22.50 0.22 -5.28 16 5 C 0.08 1.77 6.36 22.49 0.14 1.92 16 6 Cl -0.04 -0.70 29.01 -2.72 -0.08 -0.78 16 7 C -0.28 -6.57 9.14 22.53 0.21 -6.37 16 8 C 0.45 11.59 7.65 132.98 1.02 12.60 16 9 N -0.71 -18.01 5.73 -345.18 -1.98 -19.99 16 10 C 0.13 3.50 4.89 86.38 0.42 3.92 16 11 C -0.10 -3.52 5.27 30.59 0.16 -3.36 16 12 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 13 C -0.53 -29.77 9.66 25.60 0.25 -29.53 16 14 H 0.03 1.90 7.99 -2.91 -0.02 1.87 16 15 C 0.00 0.04 5.47 84.65 0.46 0.50 16 16 N -0.95 -59.31 13.96 21.45 0.30 -59.02 16 17 Si 0.95 42.70 27.47 68.60 1.88 44.59 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 20 H -0.24 -9.65 6.54 99.48 0.65 -9.00 16 21 N -0.61 -15.93 9.24 -306.36 -2.83 -18.76 16 22 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 23 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 24 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 26 H 0.15 3.34 6.69 -2.91 -0.02 3.32 16 27 H 0.41 10.03 8.60 -92.71 -0.80 9.24 16 28 H 0.07 1.84 7.92 -2.38 -0.02 1.82 16 29 H 0.07 1.85 7.92 -2.38 -0.02 1.83 16 30 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.03 1.14 7.20 -2.38 -0.02 1.12 16 33 H 0.03 1.07 7.57 -2.39 -0.02 1.05 16 34 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -64.73 307.72 1.43 -63.30 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.26 Total: 12.73 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: 4.81 Total: -14.52 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -4.51 Total: -97.76 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.94 Total: -7.57 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.88 Total: 44.59 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -64.73 1.43 -63.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641356.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.036 kcal (2) G-P(sol) polarization free energy of solvation -64.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds