Wall clock time and date at job start Mon Mar 30 2020 01:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35676 * 116.99924 * 2 1 4 4 C 1.38811 * 119.63781 * 179.97438 * 3 2 1 5 5 C 1.38570 * 119.26960 * 179.97438 * 4 3 2 6 6 C 1.38525 * 118.56697 * 0.02562 * 5 4 3 7 7 C 1.38956 * 119.22134 * 359.97438 * 6 5 4 8 8 N 1.39146 * 119.66886 * 180.02562 * 7 6 5 9 9 C 1.38389 * 119.99729 * 353.98750 * 8 7 6 10 10 C 1.38964 * 120.00320 * 299.36298 * 9 8 7 11 11 H 1.08003 * 119.99990 * 153.12506 * 10 9 8 12 12 C 1.40850 * 120.00123 * 333.13157 * 10 9 8 13 13 N 1.30325 * 119.99882 * 167.73388 * 12 10 9 14 14 Si 1.86797 * 119.99677 * 347.73763 * 12 10 9 15 15 H 1.48501 * 109.47335 * 87.96744 * 14 12 10 16 16 H 1.48500 * 109.46881 * 207.96707 * 14 12 10 17 17 H 1.48495 * 109.47407 * 327.96614 * 14 12 10 18 18 C 1.41146 * 119.99946 * 119.36743 * 9 8 7 19 19 C 1.43195 * 120.00424 * 175.36779 * 18 9 8 20 20 N 9.30903 * 96.00517 * 356.29684 * 2 1 3 21 21 C 1.43206 * 119.99916 * 355.36637 * 18 9 8 22 22 N 7.02808 * 80.66897 * 333.62578 * 2 1 3 23 23 N 1.32299 * 119.63871 * 359.72854 * 3 2 1 24 24 H 1.09001 * 109.46893 * 299.99655 * 1 2 3 25 25 H 1.08998 * 109.47669 * 59.99865 * 1 2 3 26 26 H 1.09008 * 109.47149 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.36770 * 359.96349 * 4 3 2 28 28 H 1.08005 * 120.71841 * 180.02562 * 5 4 3 29 29 H 1.08003 * 120.39351 * 179.97438 * 6 5 4 30 30 H 0.97002 * 120.00492 * 173.98766 * 8 7 6 31 31 H 0.97005 * 119.99590 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4315 1.2728 0.0005 5 6 4.0527 2.5115 0.0000 6 6 3.2621 3.6489 -0.0005 7 6 1.8791 3.5138 -0.0010 8 7 1.0760 4.6501 -0.0021 9 6 1.6500 5.9032 0.1229 10 6 2.3826 6.2216 1.2600 11 1 3.1646 6.9648 1.2080 12 6 2.1055 5.5751 2.4803 13 7 2.9330 5.6891 3.4807 14 14 0.5521 4.5542 2.6645 15 1 0.8196 3.1616 2.2235 16 1 0.1286 4.5499 4.0879 17 1 -0.5269 5.1394 1.8288 18 6 1.4913 6.8578 -0.9046 19 6 1.9997 8.1854 -0.7333 20 7 2.4029 9.2386 -0.5979 21 6 0.8218 6.4986 -2.1185 22 7 0.2894 6.2132 -3.0808 23 7 1.3174 2.3139 -0.0054 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 4.0198 0.3671 0.0016 28 1 5.1300 2.5885 0.0000 29 1 3.7152 4.6293 -0.0005 30 1 0.1139 4.5641 -0.0905 31 1 2.7422 5.2435 4.3209 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158211099.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:07 Heat of formation + Delta-G solvation = 66.960942 kcal Electronic energy + Delta-G solvation = -19717.267373 eV Core-core repulsion = 16578.665430 eV Total energy + Delta-G solvation = -3138.601943 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.46833 -38.53153 -36.87445 -35.28685 -34.82523 -34.00891 -32.22464 -30.73868 -28.96820 -27.41390 -26.81476 -23.15529 -22.67613 -21.17689 -19.34521 -17.99821 -17.68049 -17.28641 -16.39288 -15.77545 -15.53200 -15.46248 -15.13472 -13.91352 -13.74566 -13.34832 -13.01957 -12.92458 -12.80257 -12.56906 -12.03050 -11.99341 -11.81762 -11.67921 -11.61554 -11.52441 -11.26719 -11.05996 -10.88987 -10.61852 -10.21056 -9.64830 -9.40803 -9.16610 -8.30965 -7.84931 -7.23133 -5.54435 1.56395 1.70588 2.00855 2.72525 2.79549 2.83935 3.18967 3.39249 3.50422 3.76797 3.96489 4.08423 4.22414 4.25671 4.90443 5.04621 5.28162 5.31744 5.40680 5.42360 5.46459 5.59906 5.71304 5.87378 6.02716 6.29527 6.34690 6.56405 6.72146 6.96185 7.12054 7.35180 7.38276 7.59781 7.87530 7.89713 8.42373 8.83227 9.03425 9.08498 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.016555 B = 0.008027 C = 0.006823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.885964 B = 3487.384879 C = 4102.513968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.312 6.312 3 C 0.351 3.649 4 C -0.246 4.246 5 C -0.013 4.013 6 C -0.235 4.235 7 C 0.441 3.559 8 N -0.672 5.672 9 C 0.339 3.661 10 C -0.352 4.352 11 H 0.125 0.875 12 C 0.076 3.924 13 N -0.723 5.723 14 Si 0.919 3.081 15 H -0.241 1.241 16 H -0.287 1.287 17 H -0.252 1.252 18 C -0.291 4.291 19 C 0.323 3.677 20 N -0.522 5.522 21 C 0.307 3.693 22 N -0.527 5.527 23 N -0.590 5.590 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.133 0.867 28 H 0.139 0.861 29 H 0.152 0.848 30 H 0.407 0.593 31 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.393 -11.840 2.974 12.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.219 6.219 3 C 0.172 3.828 4 C -0.269 4.269 5 C -0.039 4.039 6 C -0.259 4.259 7 C 0.209 3.791 8 N -0.302 5.302 9 C 0.236 3.764 10 C -0.380 4.380 11 H 0.143 0.857 12 C -0.156 4.156 13 N -0.340 5.340 14 Si 0.743 3.257 15 H -0.165 1.165 16 H -0.214 1.214 17 H -0.176 1.176 18 C -0.309 4.309 19 C 0.014 3.986 20 N -0.203 5.203 21 C -0.001 4.001 22 N -0.208 5.208 23 N -0.322 5.322 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.109 0.891 27 H 0.151 0.849 28 H 0.157 0.843 29 H 0.170 0.830 30 H 0.245 0.755 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.139 -10.901 1.970 11.136 hybrid contribution -0.347 -0.549 0.637 0.909 sum -1.486 -11.449 2.607 11.836 Atomic orbital electron populations 1.22775 0.77840 1.02291 1.02486 1.86213 1.22495 1.24930 1.88257 1.19273 0.88927 0.83303 0.91332 1.20692 0.91466 0.99282 1.15493 1.21122 1.00072 0.90657 0.92010 1.21628 0.92042 1.01396 1.10825 1.17582 0.88067 0.84155 0.89284 1.42139 1.09277 1.02506 1.76318 1.16760 0.87567 0.80743 0.91282 1.20120 1.12443 1.14921 0.90470 0.85706 1.26701 0.99347 0.94528 0.95011 1.69378 1.32984 1.28003 1.03682 0.86096 0.80027 0.81564 0.77987 1.16523 1.21402 1.17579 1.12788 1.33383 0.89723 0.95023 1.24569 0.90923 0.91111 0.91995 1.81070 1.16788 1.12531 1.09958 1.25180 0.90977 0.92369 0.91562 1.81088 1.17738 1.09523 1.12491 1.66480 1.41213 0.97677 1.26788 0.92549 0.92368 0.89145 0.84941 0.84340 0.83003 0.75488 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.38 101.05 1.05 1.55 16 2 O -0.31 -4.63 10.47 -18.73 -0.20 -4.83 16 3 C 0.35 5.76 7.48 -17.14 -0.13 5.64 16 4 C -0.25 -3.61 10.04 -39.25 -0.39 -4.01 16 5 C -0.01 -0.19 10.16 -39.35 -0.40 -0.59 16 6 C -0.23 -4.01 8.81 -39.21 -0.35 -4.36 16 7 C 0.44 8.01 5.15 -154.87 -0.80 7.21 16 8 N -0.67 -12.41 2.24 -9.75 -0.02 -12.43 16 9 C 0.34 6.63 4.43 -83.53 -0.37 6.26 16 10 C -0.35 -7.13 7.15 -38.33 -0.27 -7.40 16 11 H 0.13 2.73 7.45 -52.48 -0.39 2.34 16 12 C 0.08 1.51 5.28 -17.20 -0.09 1.41 16 13 N -0.72 -14.55 13.90 55.60 0.77 -13.77 16 14 Si 0.92 16.40 24.33 -169.99 -4.14 12.26 16 15 H -0.24 -4.40 5.59 56.52 0.32 -4.08 16 16 H -0.29 -5.12 7.11 56.52 0.40 -4.72 16 17 H -0.25 -4.45 6.60 56.52 0.37 -4.08 16 18 C -0.29 -6.06 5.88 -104.94 -0.62 -6.68 16 19 C 0.32 7.16 14.03 -22.48 -0.32 6.84 16 20 N -0.52 -12.19 18.54 41.83 0.78 -11.42 16 21 C 0.31 6.65 14.82 -22.47 -0.33 6.32 16 22 N -0.53 -11.99 18.54 41.84 0.78 -11.21 16 23 N -0.59 -10.46 8.41 -12.48 -0.10 -10.56 16 24 H 0.06 0.70 8.11 -51.93 -0.42 0.28 16 25 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 26 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 27 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.14 1.57 8.06 -52.48 -0.42 1.14 16 29 H 0.15 2.67 6.16 -52.48 -0.32 2.34 16 30 H 0.41 7.24 7.86 -40.82 -0.32 6.92 16 31 H 0.31 5.53 8.29 -40.82 -0.34 5.19 16 LS Contribution 289.56 15.07 4.36 4.36 Total: -1.00 -25.02 289.56 -3.18 -28.21 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -2.39 Total: 7.19 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: -3.02 Total: 12.20 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: 2.20 Total: -59.40 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.20 Total: -4.83 kcal Atomic # 14 Polarization: 16.40 SS G_CDS: -4.14 Total: 12.26 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -25.02 -3.18 -28.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211099.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.167 kcal (2) G-P(sol) polarization free energy of solvation -25.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds