Wall clock time and date at job start Mon Mar 30 2020 01:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35676 * 116.99924 * 2 1 4 4 C 1.38811 * 119.63781 * 179.97438 * 3 2 1 5 5 C 1.38570 * 119.26960 * 179.97438 * 4 3 2 6 6 C 1.38525 * 118.56697 * 0.02562 * 5 4 3 7 7 C 1.38956 * 119.22134 * 359.97438 * 6 5 4 8 8 N 1.39146 * 119.66886 * 180.02562 * 7 6 5 9 9 C 1.38389 * 119.99729 * 353.98750 * 8 7 6 10 10 C 1.38964 * 120.00320 * 299.36298 * 9 8 7 11 11 H 1.08003 * 119.99990 * 153.12506 * 10 9 8 12 12 C 1.40850 * 120.00123 * 333.13157 * 10 9 8 13 13 N 1.30325 * 119.99882 * 167.73388 * 12 10 9 14 14 Si 1.86797 * 119.99677 * 347.73763 * 12 10 9 15 15 H 1.48501 * 109.47335 * 87.96744 * 14 12 10 16 16 H 1.48500 * 109.46881 * 207.96707 * 14 12 10 17 17 H 1.48495 * 109.47407 * 327.96614 * 14 12 10 18 18 C 1.41146 * 119.99946 * 119.36743 * 9 8 7 19 19 C 1.43195 * 120.00424 * 175.36779 * 18 9 8 20 20 N 9.30903 * 96.00517 * 356.29684 * 2 1 3 21 21 C 1.43206 * 119.99916 * 355.36637 * 18 9 8 22 22 N 7.02808 * 80.66897 * 333.62578 * 2 1 3 23 23 N 1.32299 * 119.63871 * 359.72854 * 3 2 1 24 24 H 1.09001 * 109.46893 * 299.99655 * 1 2 3 25 25 H 1.08998 * 109.47669 * 59.99865 * 1 2 3 26 26 H 1.09008 * 109.47149 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.36770 * 359.96349 * 4 3 2 28 28 H 1.08005 * 120.71841 * 180.02562 * 5 4 3 29 29 H 1.08003 * 120.39351 * 179.97438 * 6 5 4 30 30 H 0.97002 * 120.00492 * 173.98766 * 8 7 6 31 31 H 0.97005 * 119.99590 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4315 1.2728 0.0005 5 6 4.0527 2.5115 0.0000 6 6 3.2621 3.6489 -0.0005 7 6 1.8791 3.5138 -0.0010 8 7 1.0760 4.6501 -0.0021 9 6 1.6500 5.9032 0.1229 10 6 2.3826 6.2216 1.2600 11 1 3.1646 6.9648 1.2080 12 6 2.1055 5.5751 2.4803 13 7 2.9330 5.6891 3.4807 14 14 0.5521 4.5542 2.6645 15 1 0.8196 3.1616 2.2235 16 1 0.1286 4.5499 4.0879 17 1 -0.5269 5.1394 1.8288 18 6 1.4913 6.8578 -0.9046 19 6 1.9997 8.1854 -0.7333 20 7 2.4029 9.2386 -0.5979 21 6 0.8218 6.4986 -2.1185 22 7 0.2894 6.2132 -3.0808 23 7 1.3174 2.3139 -0.0054 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 4.0198 0.3671 0.0016 28 1 5.1300 2.5885 0.0000 29 1 3.7152 4.6293 -0.0005 30 1 0.1139 4.5641 -0.0905 31 1 2.7422 5.2435 4.3209 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158211099.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:07 Heat of formation + Delta-G solvation = 51.686963 kcal Electronic energy + Delta-G solvation = -19717.929703 eV Core-core repulsion = 16578.665430 eV Total energy + Delta-G solvation = -3139.264273 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.72926 -39.84581 -38.26345 -36.94503 -36.59665 -35.54108 -33.53920 -32.17521 -30.24601 -29.05462 -27.88531 -24.52490 -23.87545 -22.68384 -20.90714 -19.44186 -19.04702 -18.70798 -17.93253 -16.95778 -16.88365 -16.73648 -16.36931 -15.17843 -15.02508 -14.84555 -14.57680 -14.48776 -14.26347 -14.08802 -13.57778 -13.49721 -13.42019 -13.18378 -12.99640 -12.84515 -12.81819 -12.57724 -12.38317 -11.99465 -11.61402 -10.99212 -10.71149 -10.49341 -9.81699 -9.39929 -8.59945 -7.21806 0.16793 0.48059 0.57770 1.25657 1.36769 1.41700 1.83002 1.95841 2.04505 2.19506 2.28244 2.48183 2.56471 2.95355 3.32144 3.65910 3.71196 4.12486 4.27546 4.38351 4.44897 4.45620 4.50444 4.65183 4.71983 4.79900 5.12342 5.28090 5.43420 5.48331 5.63320 5.77642 5.98533 6.18130 6.36676 6.52527 7.04765 7.13241 7.28625 7.56799 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.016555 B = 0.008027 C = 0.006823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.885964 B = 3487.384879 C = 4102.513968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.315 6.315 3 C 0.334 3.666 4 C -0.238 4.238 5 C -0.005 4.005 6 C -0.252 4.252 7 C 0.423 3.577 8 N -0.675 5.675 9 C 0.355 3.645 10 C -0.350 4.350 11 H 0.106 0.894 12 C 0.063 3.937 13 N -0.738 5.738 14 Si 0.956 3.044 15 H -0.244 1.244 16 H -0.283 1.283 17 H -0.251 1.251 18 C -0.298 4.298 19 C 0.329 3.671 20 N -0.548 5.548 21 C 0.317 3.683 22 N -0.548 5.548 23 N -0.601 5.601 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.126 0.874 27 H 0.162 0.838 28 H 0.173 0.827 29 H 0.142 0.858 30 H 0.408 0.592 31 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.160 -13.764 3.514 14.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.222 6.222 3 C 0.155 3.845 4 C -0.261 4.261 5 C -0.030 4.030 6 C -0.276 4.276 7 C 0.192 3.808 8 N -0.306 5.306 9 C 0.251 3.749 10 C -0.377 4.377 11 H 0.124 0.876 12 C -0.169 4.169 13 N -0.356 5.356 14 Si 0.779 3.221 15 H -0.169 1.169 16 H -0.211 1.211 17 H -0.175 1.175 18 C -0.317 4.317 19 C 0.022 3.978 20 N -0.230 5.230 21 C 0.010 3.990 22 N -0.230 5.230 23 N -0.333 5.333 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.144 0.856 27 H 0.179 0.821 28 H 0.191 0.809 29 H 0.160 0.840 30 H 0.247 0.753 31 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.899 -12.843 2.512 13.117 hybrid contribution -0.349 -0.073 0.532 0.640 sum -1.249 -12.916 3.044 13.328 Atomic orbital electron populations 1.22985 0.76469 1.04438 1.01793 1.86219 1.23870 1.24075 1.88047 1.19692 0.89875 0.83412 0.91488 1.21096 0.91080 1.00431 1.13461 1.21528 1.01645 0.89697 0.90170 1.21710 0.91993 1.01979 1.11954 1.17686 0.88384 0.84137 0.90615 1.42042 1.09406 1.02235 1.76959 1.16527 0.86934 0.80997 0.90394 1.20040 1.12054 1.14414 0.91166 0.87627 1.27047 1.00588 0.94723 0.94510 1.69357 1.33738 1.28189 1.04302 0.85539 0.78212 0.80470 0.77906 1.16871 1.21072 1.17500 1.12792 1.34109 0.89538 0.95262 1.24754 0.90481 0.91212 0.91393 1.81059 1.17968 1.13259 1.10763 1.25209 0.90580 0.91841 0.91386 1.81085 1.18701 1.10195 1.13054 1.66427 1.41896 0.97869 1.27123 0.93198 0.93077 0.85636 0.82054 0.80929 0.84034 0.75299 0.87074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.84 10.38 113.37 1.18 2.01 16 2 O -0.31 -8.62 10.47 -89.93 -0.94 -9.56 16 3 C 0.33 10.29 7.48 84.76 0.63 10.92 16 4 C -0.24 -6.26 10.04 22.49 0.23 -6.04 16 5 C -0.01 -0.14 10.16 22.42 0.23 0.09 16 6 C -0.25 -8.29 8.81 22.51 0.20 -8.10 16 7 C 0.42 14.91 5.15 132.94 0.68 15.59 16 8 N -0.67 -24.50 2.24 -184.77 -0.41 -24.92 16 9 C 0.35 13.78 4.43 39.00 0.17 13.95 16 10 C -0.35 -14.07 7.15 23.08 0.17 -13.90 16 11 H 0.11 4.67 7.45 -2.91 -0.02 4.65 16 12 C 0.06 2.42 5.28 85.56 0.45 2.87 16 13 N -0.74 -28.90 13.90 21.98 0.31 -28.59 16 14 Si 0.96 32.56 24.33 68.60 1.67 34.23 16 15 H -0.24 -8.50 5.59 99.48 0.56 -7.95 16 16 H -0.28 -9.47 7.11 99.48 0.71 -8.76 16 17 H -0.25 -8.48 6.60 99.48 0.66 -7.82 16 18 C -0.30 -12.41 5.88 -20.07 -0.12 -12.53 16 19 C 0.33 14.66 14.03 88.33 1.24 15.90 16 20 N -0.55 -25.75 18.54 19.00 0.35 -25.40 16 21 C 0.32 13.67 14.82 88.33 1.31 14.98 16 22 N -0.55 -24.79 18.54 19.01 0.35 -24.43 16 23 N -0.60 -20.51 8.41 -306.23 -2.58 -23.09 16 24 H 0.05 1.16 8.11 -2.39 -0.02 1.14 16 25 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 26 H 0.13 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 28 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 29 H 0.14 4.90 6.16 -2.91 -0.02 4.89 16 30 H 0.41 14.30 7.86 -92.71 -0.73 13.57 16 31 H 0.32 11.02 8.29 -92.70 -0.77 10.25 16 Total: -1.00 -52.00 289.56 5.39 -46.61 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.28 Total: 19.40 kcal Atomic # 6 Polarization: 29.38 SS G_CDS: 6.37 Total: 35.75 kcal Atomic # 7 Polarization: -124.45 SS G_CDS: -1.98 Total: -126.43 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.94 Total: -9.56 kcal Atomic # 14 Polarization: 32.56 SS G_CDS: 1.67 Total: 34.23 kcal Total: -52.00 5.39 -46.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211099.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.300 kcal (2) G-P(sol) polarization free energy of solvation -52.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds