Wall clock time and date at job start Mon Mar 30 2020 01:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35745 * 117.00320 * 2 1 4 4 C 1.39470 * 120.80162 * 0.02562 * 3 2 1 5 5 C 1.37841 * 119.24935 * 179.97438 * 4 3 2 6 6 N 1.32028 * 120.91319 * 359.97438 * 5 4 3 7 7 C 1.32487 * 121.76383 * 359.70837 * 6 5 4 8 8 N 1.39175 * 119.67648 * 180.31189 * 7 6 5 9 9 C 1.38389 * 120.00206 * 174.25659 * 8 7 6 10 10 C 1.38967 * 119.99604 * 299.38603 * 9 8 7 11 11 H 1.08008 * 119.99634 * 153.09820 * 10 9 8 12 12 C 1.40847 * 120.00648 * 333.10419 * 10 9 8 13 13 N 1.30324 * 120.00414 * 167.74105 * 12 10 9 14 14 Si 1.86798 * 119.99488 * 347.73774 * 12 10 9 15 15 H 1.48507 * 109.47111 * 87.98621 * 14 12 10 16 16 H 1.48508 * 109.47308 * 207.98372 * 14 12 10 17 17 H 1.48499 * 109.47562 * 327.98408 * 14 12 10 18 18 C 1.41145 * 120.00156 * 119.39294 * 9 8 7 19 19 C 1.43194 * 119.99993 * 175.37774 * 18 9 8 20 20 N 7.31621 * 172.11777 * 215.01222 * 2 1 3 21 21 C 1.43196 * 119.99916 * 355.37248 * 18 9 8 22 22 N 6.98894 * 145.27643 * 309.82941 * 2 1 3 23 23 C 1.38877 * 120.65134 * 0.58308 * 7 6 5 24 24 H 1.09000 * 109.47167 * 60.00128 * 1 2 3 25 25 H 1.08997 * 109.47566 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47022 * 300.00674 * 1 2 3 27 27 H 1.07994 * 120.38254 * 359.95755 * 4 3 2 28 28 H 1.08001 * 119.54410 * 179.97438 * 5 4 3 29 29 H 0.96999 * 119.99989 * 354.25455 * 8 7 6 30 30 H 0.96993 * 120.00417 * 179.97438 * 13 12 10 31 31 H 1.08005 * 120.48511 * 179.70321 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3022 2.3897 0.0005 5 6 1.9611 3.6004 0.0011 6 7 3.2803 3.6548 0.0016 7 6 4.0235 2.5580 0.0073 8 7 5.4110 2.6659 0.0142 9 6 6.1927 1.5309 0.1401 10 6 6.0845 0.7351 1.2742 11 1 6.3224 -0.3171 1.2203 12 6 5.6644 1.3004 2.4940 13 7 5.3329 0.5283 3.4902 14 14 5.5826 3.1569 2.6836 15 1 4.2519 3.6420 2.2371 16 1 5.7883 3.5185 4.1093 17 1 6.6423 3.7864 1.8555 18 6 7.1000 1.1817 -0.8831 19 6 7.9789 0.0645 -0.7101 20 7 8.6761 -0.8218 -0.5757 21 6 7.1415 1.9445 -2.0943 22 7 7.1733 2.5499 -3.0572 23 6 3.4316 1.3017 0.0009 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.2228 2.3556 0.0003 28 1 1.3904 4.5173 0.0011 29 1 5.8302 3.5366 -0.0693 30 1 5.0440 0.9177 4.3303 31 1 4.0401 0.4093 0.0008 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158211449.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:34 Heat of formation + Delta-G solvation = 66.894316 kcal Electronic energy + Delta-G solvation = -19712.057107 eV Core-core repulsion = 16573.452275 eV Total energy + Delta-G solvation = -3138.604832 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.45733 -38.61141 -37.11875 -35.27272 -34.76193 -33.94602 -31.39091 -31.07071 -28.93898 -27.37269 -27.21511 -23.37582 -22.44702 -21.10690 -19.27441 -18.31279 -17.53022 -17.01896 -16.31647 -15.68349 -15.60371 -15.46857 -14.97560 -14.21466 -13.92678 -13.46667 -13.24701 -12.89791 -12.76443 -12.53129 -12.34478 -11.94873 -11.75760 -11.64998 -11.57700 -11.39469 -11.11377 -11.05931 -10.97187 -10.60315 -10.15688 -9.68201 -9.26158 -8.56644 -8.42947 -7.81142 -7.32832 -5.49353 1.51565 1.74386 2.03578 2.78144 2.84384 2.89820 3.18549 3.44934 3.58504 3.80937 4.00317 4.12403 4.27623 4.28404 4.85568 5.03795 5.09416 5.12902 5.21387 5.29285 5.41829 5.44152 5.55307 5.90361 6.09104 6.18798 6.36384 6.50073 6.53606 7.03873 7.13669 7.41888 7.49506 7.61012 7.90824 7.96612 8.53698 8.87883 9.07890 9.13629 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.014681 B = 0.008123 C = 0.007358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.761178 B = 3446.040818 C = 3804.294001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.308 6.308 3 C 0.193 3.807 4 C -0.315 4.315 5 C 0.170 3.830 6 N -0.556 5.556 7 C 0.435 3.565 8 N -0.670 5.670 9 C 0.337 3.663 10 C -0.351 4.351 11 H 0.125 0.875 12 C 0.075 3.925 13 N -0.724 5.724 14 Si 0.918 3.082 15 H -0.238 1.238 16 H -0.287 1.287 17 H -0.251 1.251 18 C -0.291 4.291 19 C 0.323 3.677 20 N -0.523 5.523 21 C 0.307 3.693 22 N -0.527 5.527 23 C -0.236 4.236 24 H 0.055 0.945 25 H 0.098 0.902 26 H 0.055 0.945 27 H 0.131 0.869 28 H 0.154 0.846 29 H 0.409 0.591 30 H 0.305 0.695 31 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.047 4.057 2.969 13.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.219 6.219 3 C 0.140 3.860 4 C -0.339 4.339 5 C 0.012 3.988 6 N -0.276 5.276 7 C 0.203 3.797 8 N -0.300 5.300 9 C 0.234 3.766 10 C -0.378 4.378 11 H 0.142 0.858 12 C -0.157 4.157 13 N -0.341 5.341 14 Si 0.743 3.257 15 H -0.162 1.162 16 H -0.214 1.214 17 H -0.175 1.175 18 C -0.309 4.309 19 C 0.015 3.985 20 N -0.204 5.204 21 C -0.001 4.001 22 N -0.209 5.209 23 C -0.261 4.261 24 H 0.074 0.926 25 H 0.117 0.883 26 H 0.074 0.926 27 H 0.149 0.851 28 H 0.171 0.829 29 H 0.248 0.752 30 H 0.117 0.883 31 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.473 3.917 1.965 12.281 hybrid contribution -0.925 0.409 0.636 1.194 sum -12.398 4.326 2.600 13.386 Atomic orbital electron populations 1.23051 0.78492 1.03790 1.01321 1.86087 1.21234 1.26681 1.87901 1.18954 0.91774 0.84129 0.91128 1.21839 1.00781 0.93221 1.18038 1.22013 0.88671 0.96712 0.91423 1.67148 1.07330 1.30610 1.22475 1.17703 0.84322 0.88482 0.89210 1.42085 1.01844 1.09818 1.76265 1.16780 0.86613 0.81895 0.91294 1.20129 1.27455 0.99615 0.90638 0.85756 1.26736 0.90372 1.03608 0.95000 1.69382 1.20327 1.40595 1.03769 0.86105 0.82856 0.78799 0.77980 1.16227 1.21406 1.17457 1.12778 1.15809 1.06989 0.95354 1.24562 0.90942 0.91074 0.91967 1.81055 1.14893 1.14437 1.10044 1.25237 0.91486 0.91810 0.91539 1.81157 1.13398 1.13966 1.12400 1.20887 0.92294 0.99131 1.13752 0.92649 0.88328 0.92640 0.85130 0.82882 0.75169 0.88325 0.82591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.84 101.05 0.99 1.27 16 2 O -0.31 -4.65 10.51 -18.94 -0.20 -4.85 16 3 C 0.19 3.16 6.73 -38.86 -0.26 2.90 16 4 C -0.32 -4.33 9.11 -39.27 -0.36 -4.69 16 5 C 0.17 2.44 11.17 -17.61 -0.20 2.24 16 6 N -0.56 -9.72 9.57 -12.47 -0.12 -9.83 16 7 C 0.43 8.12 5.15 -154.87 -0.80 7.32 16 8 N -0.67 -12.76 2.24 -9.77 -0.02 -12.78 16 9 C 0.34 6.84 4.44 -83.53 -0.37 6.47 16 10 C -0.35 -7.41 7.15 -38.33 -0.27 -7.69 16 11 H 0.12 2.84 7.45 -52.48 -0.39 2.45 16 12 C 0.08 1.53 5.28 -17.21 -0.09 1.44 16 13 N -0.72 -15.06 13.90 55.60 0.77 -14.29 16 14 Si 0.92 16.69 24.33 -169.99 -4.14 12.56 16 15 H -0.24 -4.36 5.59 56.52 0.32 -4.05 16 16 H -0.29 -5.18 7.11 56.52 0.40 -4.78 16 17 H -0.25 -4.50 6.60 56.52 0.37 -4.13 16 18 C -0.29 -6.26 5.88 -104.95 -0.62 -6.87 16 19 C 0.32 7.37 14.03 -22.49 -0.32 7.06 16 20 N -0.52 -12.51 18.53 41.82 0.78 -11.73 16 21 C 0.31 6.81 14.83 -22.41 -0.33 6.48 16 22 N -0.53 -12.23 18.55 41.91 0.78 -11.46 16 23 C -0.24 -4.39 8.77 -39.09 -0.34 -4.74 16 24 H 0.05 0.46 7.71 -51.93 -0.40 0.06 16 25 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.47 7.71 -51.93 -0.40 0.07 16 27 H 0.13 1.36 6.46 -52.49 -0.34 1.02 16 28 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.41 7.45 7.87 -40.82 -0.32 7.12 16 30 H 0.30 5.68 8.28 -40.82 -0.34 5.35 16 31 H 0.16 3.11 6.17 -52.48 -0.32 2.79 16 LS Contribution 287.14 15.07 4.33 4.33 Total: -1.00 -26.37 287.14 -3.05 -29.43 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -2.27 Total: 7.43 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: -2.96 Total: 11.20 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: 2.18 Total: -60.09 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.20 Total: -4.85 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -4.14 Total: 12.56 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.37 -3.05 -29.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211449.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.323 kcal (2) G-P(sol) polarization free energy of solvation -26.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds