Wall clock time and date at job start Mon Mar 30 2020 01:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35745 * 117.00320 * 2 1 4 4 C 1.39470 * 120.80162 * 0.02562 * 3 2 1 5 5 C 1.37841 * 119.24935 * 179.97438 * 4 3 2 6 6 N 1.32028 * 120.91319 * 359.97438 * 5 4 3 7 7 C 1.32487 * 121.76383 * 359.70837 * 6 5 4 8 8 N 1.39175 * 119.67648 * 180.31189 * 7 6 5 9 9 C 1.38389 * 120.00206 * 174.25659 * 8 7 6 10 10 C 1.38967 * 119.99604 * 299.38603 * 9 8 7 11 11 H 1.08008 * 119.99634 * 153.09820 * 10 9 8 12 12 C 1.40847 * 120.00648 * 333.10419 * 10 9 8 13 13 N 1.30324 * 120.00414 * 167.74105 * 12 10 9 14 14 Si 1.86798 * 119.99488 * 347.73774 * 12 10 9 15 15 H 1.48507 * 109.47111 * 87.98621 * 14 12 10 16 16 H 1.48508 * 109.47308 * 207.98372 * 14 12 10 17 17 H 1.48499 * 109.47562 * 327.98408 * 14 12 10 18 18 C 1.41145 * 120.00156 * 119.39294 * 9 8 7 19 19 C 1.43194 * 119.99993 * 175.37774 * 18 9 8 20 20 N 7.31621 * 172.11777 * 215.01222 * 2 1 3 21 21 C 1.43196 * 119.99916 * 355.37248 * 18 9 8 22 22 N 6.98894 * 145.27643 * 309.82941 * 2 1 3 23 23 C 1.38877 * 120.65134 * 0.58308 * 7 6 5 24 24 H 1.09000 * 109.47167 * 60.00128 * 1 2 3 25 25 H 1.08997 * 109.47566 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47022 * 300.00674 * 1 2 3 27 27 H 1.07994 * 120.38254 * 359.95755 * 4 3 2 28 28 H 1.08001 * 119.54410 * 179.97438 * 5 4 3 29 29 H 0.96999 * 119.99989 * 354.25455 * 8 7 6 30 30 H 0.96993 * 120.00417 * 179.97438 * 13 12 10 31 31 H 1.08005 * 120.48511 * 179.70321 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3022 2.3897 0.0005 5 6 1.9611 3.6004 0.0011 6 7 3.2803 3.6548 0.0016 7 6 4.0235 2.5580 0.0073 8 7 5.4110 2.6659 0.0142 9 6 6.1927 1.5309 0.1401 10 6 6.0845 0.7351 1.2742 11 1 6.3224 -0.3171 1.2203 12 6 5.6644 1.3004 2.4940 13 7 5.3329 0.5283 3.4902 14 14 5.5826 3.1569 2.6836 15 1 4.2519 3.6420 2.2371 16 1 5.7883 3.5185 4.1093 17 1 6.6423 3.7864 1.8555 18 6 7.1000 1.1817 -0.8831 19 6 7.9789 0.0645 -0.7101 20 7 8.6761 -0.8218 -0.5757 21 6 7.1415 1.9445 -2.0943 22 7 7.1733 2.5499 -3.0572 23 6 3.4316 1.3017 0.0009 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.2228 2.3556 0.0003 28 1 1.3904 4.5173 0.0011 29 1 5.8302 3.5366 -0.0693 30 1 5.0440 0.9177 4.3303 31 1 4.0401 0.4093 0.0008 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158211449.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:33 Heat of formation + Delta-G solvation = 50.622134 kcal Electronic energy + Delta-G solvation = -19712.762722 eV Core-core repulsion = 16573.452275 eV Total energy + Delta-G solvation = -3139.310447 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.70296 -39.88293 -38.53723 -37.00054 -36.58660 -35.53155 -32.82423 -32.34875 -30.27210 -29.06302 -28.13196 -24.66977 -23.73672 -22.62672 -20.86624 -19.64028 -19.13540 -18.36095 -17.88616 -16.90324 -16.76585 -16.69505 -16.24833 -15.40016 -15.23645 -14.85780 -14.61166 -14.58583 -14.40350 -14.26472 -13.59077 -13.47950 -13.41457 -13.25486 -13.06086 -12.84709 -12.78888 -12.46765 -12.11733 -12.08203 -11.60775 -11.11837 -10.53288 -10.00424 -9.75983 -9.40479 -8.76337 -7.22910 0.14943 0.49003 0.57361 1.27916 1.40328 1.45627 1.87005 1.97211 2.05257 2.17571 2.33189 2.47749 2.60351 2.98308 3.31291 3.66862 3.80665 3.98096 4.20005 4.26838 4.39626 4.43275 4.45378 4.63244 4.72610 4.81916 4.97692 5.22743 5.27337 5.47897 5.58998 5.75616 6.01183 6.35193 6.41545 6.49398 7.08197 7.22363 7.27935 7.58113 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.014681 B = 0.008123 C = 0.007358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.761178 B = 3446.040818 C = 3804.294001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.188 3.812 4 C -0.299 4.299 5 C 0.168 3.832 6 N -0.570 5.570 7 C 0.420 3.580 8 N -0.672 5.672 9 C 0.353 3.647 10 C -0.353 4.353 11 H 0.099 0.901 12 C 0.057 3.943 13 N -0.743 5.743 14 Si 0.959 3.041 15 H -0.235 1.235 16 H -0.281 1.281 17 H -0.249 1.249 18 C -0.300 4.300 19 C 0.328 3.672 20 N -0.548 5.548 21 C 0.317 3.683 22 N -0.545 5.545 23 C -0.265 4.265 24 H 0.073 0.927 25 H 0.117 0.883 26 H 0.071 0.929 27 H 0.171 0.829 28 H 0.197 0.803 29 H 0.413 0.587 30 H 0.317 0.683 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.584 5.659 3.448 16.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.134 3.866 4 C -0.322 4.322 5 C 0.011 3.989 6 N -0.291 5.291 7 C 0.190 3.810 8 N -0.304 5.304 9 C 0.249 3.751 10 C -0.380 4.380 11 H 0.117 0.883 12 C -0.174 4.174 13 N -0.361 5.361 14 Si 0.780 3.220 15 H -0.159 1.159 16 H -0.208 1.208 17 H -0.172 1.172 18 C -0.319 4.319 19 C 0.021 3.979 20 N -0.231 5.231 21 C 0.010 3.990 22 N -0.228 5.228 23 C -0.290 4.290 24 H 0.091 0.909 25 H 0.136 0.864 26 H 0.089 0.911 27 H 0.189 0.811 28 H 0.214 0.786 29 H 0.252 0.748 30 H 0.129 0.871 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.044 5.507 2.443 15.282 hybrid contribution -0.350 -0.178 0.535 0.664 sum -14.394 5.329 2.978 15.635 Atomic orbital electron populations 1.23444 0.75614 1.05768 1.02892 1.86066 1.24244 1.26506 1.87585 1.19127 0.91309 0.85585 0.90537 1.22238 1.02653 0.91780 1.15548 1.22814 0.87814 0.98696 0.89618 1.67203 1.08824 1.29986 1.23045 1.17728 0.83985 0.88943 0.90373 1.41971 1.02271 1.09240 1.76945 1.16542 0.85996 0.82217 0.90303 1.20039 1.27611 0.98648 0.91669 0.88291 1.27213 0.89744 1.06109 0.94306 1.69366 1.20306 1.41995 1.04462 0.85509 0.82948 0.75422 0.78092 1.15920 1.20791 1.17244 1.12807 1.16426 1.06951 0.95700 1.24774 0.90692 0.91043 0.91388 1.81035 1.15934 1.15294 1.10834 1.25225 0.90981 0.91469 0.91340 1.81148 1.14160 1.14657 1.12818 1.20821 0.93672 0.98329 1.16225 0.90864 0.86442 0.91067 0.81119 0.78635 0.74781 0.87076 0.85200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.84 113.37 1.12 1.39 16 2 O -0.33 -9.55 10.51 -90.70 -0.95 -10.50 16 3 C 0.19 5.85 6.73 22.73 0.15 6.01 16 4 C -0.30 -7.10 9.11 22.47 0.20 -6.90 16 5 C 0.17 4.17 11.17 84.57 0.94 5.11 16 6 N -0.57 -18.63 9.57 -193.38 -1.85 -20.48 16 7 C 0.42 15.36 5.15 132.92 0.68 16.04 16 8 N -0.67 -25.44 2.24 -184.81 -0.41 -25.85 16 9 C 0.35 14.56 4.44 39.00 0.17 14.73 16 10 C -0.35 -15.24 7.15 23.08 0.17 -15.08 16 11 H 0.10 4.75 7.45 -2.91 -0.02 4.73 16 12 C 0.06 2.32 5.28 85.55 0.45 2.77 16 13 N -0.74 -30.88 13.90 21.98 0.31 -30.57 16 14 Si 0.96 33.25 24.33 68.60 1.67 34.91 16 15 H -0.24 -8.08 5.59 99.48 0.56 -7.52 16 16 H -0.28 -9.42 7.11 99.48 0.71 -8.72 16 17 H -0.25 -8.50 6.60 99.48 0.66 -7.85 16 18 C -0.30 -13.13 5.88 -20.08 -0.12 -13.25 16 19 C 0.33 15.34 14.03 88.34 1.24 16.58 16 20 N -0.55 -26.83 18.53 19.00 0.35 -26.48 16 21 C 0.32 14.14 14.83 88.31 1.31 15.45 16 22 N -0.55 -25.25 18.55 19.03 0.35 -24.90 16 23 C -0.27 -9.89 8.77 22.59 0.20 -9.69 16 24 H 0.07 0.93 7.71 -2.39 -0.02 0.92 16 25 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.07 0.94 7.71 -2.39 -0.02 0.92 16 27 H 0.17 2.60 6.46 -2.91 -0.02 2.58 16 28 H 0.20 3.08 8.06 -2.91 -0.02 3.06 16 29 H 0.41 14.74 7.87 -92.71 -0.73 14.01 16 30 H 0.32 11.58 8.28 -92.71 -0.77 10.81 16 31 H 0.13 5.42 6.17 -2.91 -0.02 5.40 16 Total: -1.00 -57.20 287.14 6.27 -50.94 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.28 Total: 19.77 kcal Atomic # 6 Polarization: 26.65 SS G_CDS: 6.52 Total: 33.17 kcal Atomic # 7 Polarization: -127.03 SS G_CDS: -1.25 Total: -128.28 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.95 Total: -10.50 kcal Atomic # 14 Polarization: 33.25 SS G_CDS: 1.67 Total: 34.91 kcal Total: -57.20 6.27 -50.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211449.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.559 kcal (2) G-P(sol) polarization free energy of solvation -57.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds