Wall clock time and date at job start Mon Mar 30 2020 00:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31486 * 119.81287 * 2 1 4 4 C 1.32744 * 121.73020 * 180.02562 * 3 2 1 5 5 N 1.38370 * 119.42680 * 180.02562 * 4 3 2 6 6 C 1.46511 * 119.99722 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.46995 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47279 * 304.99646 * 7 6 5 9 9 O 1.42904 * 109.47068 * 65.00379 * 7 6 5 10 10 C 1.53005 * 109.46924 * 184.99716 * 7 6 5 11 11 Cl 1.80303 * 109.46978 * 174.99951 * 10 7 6 12 12 C 1.39701 * 121.13959 * 359.97438 * 4 3 2 13 13 C 1.36560 * 119.49336 * 0.02562 * 12 4 3 14 14 C 1.40752 * 119.81851 * 180.02562 * 2 1 3 15 15 C 1.41201 * 120.57043 * 359.72233 * 14 2 1 16 16 H 1.07995 * 119.99577 * 334.88302 * 15 14 2 17 17 C 1.39873 * 120.00087 * 154.88288 * 15 14 2 18 18 N 1.30906 * 119.99751 * 344.02397 * 17 15 14 19 19 Si 1.86796 * 119.99856 * 164.01954 * 17 15 14 20 20 H 1.48497 * 109.47484 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46656 * 120.00164 * 19 17 15 22 22 H 1.48497 * 109.47169 * 240.00021 * 19 17 15 23 23 H 1.09000 * 109.46755 * 269.97986 * 1 2 3 24 24 H 1.08999 * 109.47295 * 29.97636 * 1 2 3 25 25 H 1.08996 * 109.46828 * 149.97895 * 1 2 3 26 26 H 0.96996 * 120.00912 * 0.02562 * 5 4 3 27 27 H 1.09000 * 109.46823 * 300.00106 * 6 5 4 28 28 H 1.08995 * 109.46725 * 60.00189 * 6 5 4 29 29 H 0.96693 * 114.00218 * 59.99226 * 9 7 6 30 30 H 1.08997 * 109.47334 * 295.00231 * 10 7 6 31 31 H 1.09004 * 109.46571 * 55.00572 * 10 7 6 32 32 H 1.08006 * 120.25505 * 179.97438 * 12 4 3 33 33 H 1.08008 * 120.79520 * 180.02562 * 13 12 4 34 34 H 0.96996 * 119.99679 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1408 0.0000 4 6 3.4874 1.1853 -0.0005 5 7 4.1265 2.4125 0.0001 6 6 5.5903 2.4761 0.0001 7 6 6.0371 3.9394 0.0014 8 1 5.5796 4.4598 -0.8399 9 8 5.6318 4.5601 1.2231 10 6 7.5605 4.0075 -0.1242 11 17 8.0751 5.7293 -0.2705 12 6 4.2494 0.0144 -0.0005 13 6 3.6199 -1.1975 -0.0006 14 6 2.2069 -1.2212 -0.0005 15 6 1.5092 -2.4488 0.0048 16 1 0.5079 -2.4989 0.4061 17 6 2.1150 -3.5998 -0.5097 18 7 3.1766 -3.4971 -1.2688 19 14 1.4094 -5.2833 -0.1134 20 1 0.2165 -5.1277 0.7572 21 1 1.0167 -5.9643 -1.3732 22 1 2.4336 -6.0962 0.5903 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 3.6056 3.2307 0.0012 27 1 5.9755 1.9781 0.8898 28 1 5.9755 1.9790 -0.8901 29 1 6.0021 4.1479 2.0155 30 1 8.0182 3.5654 0.7607 31 1 7.8768 3.4572 -1.0104 32 1 5.3282 0.0672 -0.0014 33 1 4.1884 -2.1159 -0.0002 34 1 3.5969 -4.2953 -1.6252 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158702207.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:08 Heat of formation + Delta-G solvation = -39.256756 kcal Electronic energy + Delta-G solvation = -17943.823389 eV Core-core repulsion = 14901.722995 eV Total energy + Delta-G solvation = -3042.100394 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.89627 -38.01060 -35.99878 -34.95954 -33.53907 -31.46600 -30.88805 -29.76189 -26.90050 -25.85076 -23.97235 -22.16164 -21.17714 -20.00085 -17.24406 -16.96222 -16.36660 -16.32287 -15.21886 -15.02416 -14.52562 -13.96289 -13.68325 -13.62079 -13.24037 -13.15961 -12.57491 -12.45067 -11.82303 -11.61962 -11.54016 -11.41327 -11.19930 -11.16637 -10.92259 -10.83456 -10.64650 -10.54482 -10.09143 -9.69824 -9.39899 -8.68317 -8.17388 -8.02081 -6.83756 -6.60722 -4.19898 1.96995 2.70740 2.94764 3.08132 3.13363 3.26834 3.81642 3.94987 4.17046 4.56019 4.63348 4.68283 4.80239 5.07852 5.21758 5.62418 5.67686 5.88510 5.97381 6.36981 6.46675 6.50528 6.68949 6.80416 7.03982 7.20972 7.35861 7.42416 7.45366 7.72242 7.89051 8.23742 8.42353 8.63553 8.83806 8.90528 9.72208 10.22560 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.036608 B = 0.003581 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.678300 B = 7816.086635 C = 8412.827507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.038 3.962 3 N -0.519 5.519 4 C 0.283 3.717 5 N -0.738 5.738 6 C 0.116 3.884 7 C 0.091 3.909 8 H 0.114 0.886 9 O -0.546 6.546 10 C -0.064 4.064 11 Cl -0.174 7.174 12 C -0.210 4.210 13 C -0.092 4.092 14 C 0.034 3.966 15 C -0.452 4.452 16 H 0.081 0.919 17 C 0.073 3.927 18 N -0.807 5.807 19 Si 0.907 3.093 20 H -0.261 1.261 21 H -0.276 1.276 22 H -0.274 1.274 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.068 0.932 26 H 0.394 0.606 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.376 0.624 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.127 0.873 34 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.064 7.940 1.997 11.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 N -0.235 5.235 4 C 0.050 3.950 5 N -0.379 5.379 6 C -0.011 4.011 7 C 0.030 3.970 8 H 0.132 0.868 9 O -0.351 6.351 10 C -0.128 4.128 11 Cl -0.148 7.148 12 C -0.234 4.234 13 C -0.119 4.119 14 C 0.029 3.971 15 C -0.484 4.484 16 H 0.099 0.901 17 C -0.143 4.143 18 N -0.434 5.434 19 Si 0.732 3.268 20 H -0.184 1.184 21 H -0.201 1.201 22 H -0.199 1.199 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.228 0.772 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.223 0.777 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.113 0.887 33 H 0.145 0.855 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.623 8.971 1.435 11.859 hybrid contribution 0.651 -1.746 0.348 1.896 sum 8.273 7.225 1.783 11.127 Atomic orbital electron populations 1.20257 0.91163 1.01127 1.00293 1.20754 0.94723 0.87360 1.07238 1.66302 1.07334 1.31294 1.18564 1.17654 0.88287 0.84795 1.04246 1.43380 1.02738 1.05283 1.86474 1.21602 0.83539 0.94564 1.01438 1.22407 0.91243 0.93861 0.89448 0.86804 1.86662 1.74377 1.58968 1.15075 1.25061 0.97883 0.83842 1.06012 1.98727 1.92093 1.25141 1.98819 1.20766 0.97980 0.92953 1.11659 1.21280 0.94921 0.96142 0.99525 1.18169 0.92189 0.93104 0.93675 1.19385 1.01674 0.91903 1.35392 0.90134 1.25867 0.94424 1.01275 0.92738 1.69824 1.18531 1.31238 1.23792 0.86282 0.79992 0.81452 0.79121 1.18430 1.20136 1.19913 0.93380 0.93381 0.91316 0.77182 0.92761 0.92161 0.77674 0.88346 0.87684 0.88747 0.85528 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.51 9.57 36.01 0.34 -1.16 16 2 C 0.04 0.95 6.86 -81.79 -0.56 0.39 16 3 N -0.52 -12.68 10.29 -8.05 -0.08 -12.76 16 4 C 0.28 6.34 7.64 -155.13 -1.19 5.15 16 5 N -0.74 -12.98 5.65 -60.35 -0.34 -13.32 16 6 C 0.12 1.48 4.51 -4.04 -0.02 1.46 16 7 C 0.09 0.92 3.08 -26.73 -0.08 0.84 16 8 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 9 O -0.55 -6.07 13.12 -35.23 -0.46 -6.53 16 10 C -0.06 -0.51 6.31 37.16 0.23 -0.28 16 11 Cl -0.17 -1.76 29.00 -51.86 -1.50 -3.26 16 12 C -0.21 -4.77 9.24 -39.64 -0.37 -5.13 16 13 C -0.09 -2.34 8.73 -39.02 -0.34 -2.68 16 14 C 0.03 0.88 5.58 -106.65 -0.59 0.29 16 15 C -0.45 -11.64 8.14 -37.85 -0.31 -11.95 16 16 H 0.08 1.98 6.86 -52.49 -0.36 1.62 16 17 C 0.07 1.79 5.19 -17.33 -0.09 1.70 16 18 N -0.81 -20.45 10.94 55.54 0.61 -19.84 16 19 Si 0.91 18.37 29.59 -169.99 -5.03 13.34 16 20 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 21 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.07 1.44 6.77 -51.93 -0.35 1.09 16 26 H 0.39 6.85 8.59 -40.82 -0.35 6.50 16 27 H 0.05 0.67 7.90 -51.93 -0.41 0.26 16 28 H 0.06 0.77 7.90 -51.93 -0.41 0.36 16 29 H 0.38 3.02 9.04 45.56 0.41 3.43 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 1.86 6.64 -52.48 -0.35 1.51 16 33 H 0.13 3.28 6.25 -52.48 -0.33 2.95 16 34 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 LS Contribution 303.72 15.07 4.58 4.58 Total: -1.00 -29.43 303.72 -8.60 -38.03 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -3.40 Total: 11.14 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -2.97 Total: -11.36 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.18 Total: -45.92 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.46 Total: -6.53 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.34 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -1.50 Total: -3.26 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.43 -8.60 -38.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158702207.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.229 kcal (2) G-P(sol) polarization free energy of solvation -29.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds