Wall clock time and date at job start Mon Mar 30 2020 00:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31486 * 119.81287 * 2 1 4 4 C 1.32744 * 121.73020 * 180.02562 * 3 2 1 5 5 N 1.38370 * 119.42680 * 180.02562 * 4 3 2 6 6 C 1.46511 * 119.99722 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.46995 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47279 * 304.99646 * 7 6 5 9 9 O 1.42904 * 109.47068 * 65.00379 * 7 6 5 10 10 C 1.53005 * 109.46924 * 184.99716 * 7 6 5 11 11 Cl 1.80303 * 109.46978 * 174.99951 * 10 7 6 12 12 C 1.39701 * 121.13959 * 359.97438 * 4 3 2 13 13 C 1.36560 * 119.49336 * 0.02562 * 12 4 3 14 14 C 1.40752 * 119.81851 * 180.02562 * 2 1 3 15 15 C 1.41201 * 120.57043 * 359.72233 * 14 2 1 16 16 H 1.07995 * 119.99577 * 334.88302 * 15 14 2 17 17 C 1.39873 * 120.00087 * 154.88288 * 15 14 2 18 18 N 1.30906 * 119.99751 * 344.02397 * 17 15 14 19 19 Si 1.86796 * 119.99856 * 164.01954 * 17 15 14 20 20 H 1.48497 * 109.47484 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46656 * 120.00164 * 19 17 15 22 22 H 1.48497 * 109.47169 * 240.00021 * 19 17 15 23 23 H 1.09000 * 109.46755 * 269.97986 * 1 2 3 24 24 H 1.08999 * 109.47295 * 29.97636 * 1 2 3 25 25 H 1.08996 * 109.46828 * 149.97895 * 1 2 3 26 26 H 0.96996 * 120.00912 * 0.02562 * 5 4 3 27 27 H 1.09000 * 109.46823 * 300.00106 * 6 5 4 28 28 H 1.08995 * 109.46725 * 60.00189 * 6 5 4 29 29 H 0.96693 * 114.00218 * 59.99226 * 9 7 6 30 30 H 1.08997 * 109.47334 * 295.00231 * 10 7 6 31 31 H 1.09004 * 109.46571 * 55.00572 * 10 7 6 32 32 H 1.08006 * 120.25505 * 179.97438 * 12 4 3 33 33 H 1.08008 * 120.79520 * 180.02562 * 13 12 4 34 34 H 0.96996 * 119.99679 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1408 0.0000 4 6 3.4874 1.1853 -0.0005 5 7 4.1265 2.4125 0.0001 6 6 5.5903 2.4761 0.0001 7 6 6.0371 3.9394 0.0014 8 1 5.5796 4.4598 -0.8399 9 8 5.6318 4.5601 1.2231 10 6 7.5605 4.0075 -0.1242 11 17 8.0751 5.7293 -0.2705 12 6 4.2494 0.0144 -0.0005 13 6 3.6199 -1.1975 -0.0006 14 6 2.2069 -1.2212 -0.0005 15 6 1.5092 -2.4488 0.0048 16 1 0.5079 -2.4989 0.4061 17 6 2.1150 -3.5998 -0.5097 18 7 3.1766 -3.4971 -1.2688 19 14 1.4094 -5.2833 -0.1134 20 1 0.2165 -5.1277 0.7572 21 1 1.0167 -5.9643 -1.3732 22 1 2.4336 -6.0962 0.5903 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 3.6056 3.2307 0.0012 27 1 5.9755 1.9781 0.8898 28 1 5.9755 1.9790 -0.8901 29 1 6.0021 4.1479 2.0155 30 1 8.0182 3.5654 0.7607 31 1 7.8768 3.4572 -1.0104 32 1 5.3282 0.0672 -0.0014 33 1 4.1884 -2.1159 -0.0002 34 1 3.5969 -4.2953 -1.6252 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158702207.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:08 Heat of formation + Delta-G solvation = -59.273108 kcal Electronic energy + Delta-G solvation = -17944.691364 eV Core-core repulsion = 14901.722995 eV Total energy + Delta-G solvation = -3042.968368 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.54657 -39.07783 -36.83139 -36.40105 -35.21566 -32.95068 -32.46877 -31.13384 -28.68454 -27.09678 -25.60917 -23.29792 -22.80862 -21.66325 -19.09761 -18.29702 -17.55800 -17.22766 -16.86296 -16.56806 -15.56674 -15.39149 -15.22268 -14.94782 -14.45622 -14.26749 -14.09107 -13.66134 -13.53894 -13.42988 -13.14553 -12.83975 -12.79666 -12.58976 -12.30931 -12.18076 -11.77522 -11.50100 -11.35233 -11.17812 -10.92491 -10.36745 -9.99572 -9.87575 -8.63126 -8.35576 -6.08087 0.89610 1.14435 1.27415 1.43349 1.56168 1.58154 2.26491 2.59469 2.84786 3.41549 3.61686 3.77518 3.87690 3.94694 4.19389 4.34897 4.51837 4.60430 4.66327 4.70157 4.78369 4.97566 5.01604 5.07996 5.22788 5.39529 5.56353 5.67048 5.90789 6.03221 6.51749 6.65042 6.75904 6.87669 6.97528 7.15005 7.90182 8.43429 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.036608 B = 0.003581 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.678300 B = 7816.086635 C = 8412.827507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.020 3.980 3 N -0.539 5.539 4 C 0.288 3.712 5 N -0.732 5.732 6 C 0.111 3.889 7 C 0.103 3.897 8 H 0.105 0.895 9 O -0.562 6.562 10 C -0.056 4.056 11 Cl -0.192 7.192 12 C -0.214 4.214 13 C -0.109 4.109 14 C -0.002 4.002 15 C -0.481 4.481 16 H 0.081 0.919 17 C 0.033 3.967 18 N -0.839 5.839 19 Si 0.979 3.021 20 H -0.258 1.258 21 H -0.271 1.271 22 H -0.268 1.268 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.395 0.605 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.389 0.611 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.114 0.886 34 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.850 8.097 2.354 12.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.118 4.118 3 N -0.256 5.256 4 C 0.053 3.947 5 N -0.371 5.371 6 C -0.015 4.015 7 C 0.043 3.957 8 H 0.123 0.877 9 O -0.370 6.370 10 C -0.120 4.120 11 Cl -0.165 7.165 12 C -0.238 4.238 13 C -0.136 4.136 14 C -0.007 4.007 15 C -0.512 4.512 16 H 0.099 0.901 17 C -0.180 4.180 18 N -0.467 5.467 19 Si 0.800 3.200 20 H -0.181 1.181 21 H -0.196 1.196 22 H -0.193 1.193 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.230 0.770 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.239 0.761 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.132 0.868 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.436 9.165 1.800 12.586 hybrid contribution 0.488 -1.644 0.243 1.732 sum 8.923 7.521 2.044 11.848 Atomic orbital electron populations 1.20238 0.89215 1.01507 1.01242 1.21267 0.96403 0.87311 1.06802 1.66441 1.08348 1.31050 1.19804 1.18059 0.88062 0.86514 1.02024 1.43553 1.04749 1.03585 1.85170 1.21876 0.80595 0.96776 1.02233 1.22217 0.92699 0.91715 0.89045 0.87687 1.86640 1.74973 1.59412 1.15928 1.25105 0.96074 0.82797 1.07990 1.98732 1.92083 1.26811 1.98887 1.20987 0.99532 0.92172 1.11116 1.21324 0.94980 0.96747 1.00568 1.18507 0.92943 0.94008 0.95224 1.19582 1.02125 0.92765 1.36775 0.90106 1.26658 0.94684 1.04621 0.92045 1.69877 1.19754 1.32522 1.24561 0.85200 0.79269 0.76580 0.78923 1.18116 1.19574 1.19275 0.92048 0.92254 0.91536 0.77015 0.91507 0.91502 0.76116 0.86130 0.86052 0.85801 0.86770 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.74 9.57 71.24 0.68 -2.06 16 2 C 0.02 1.02 6.86 43.23 0.30 1.32 16 3 N -0.54 -26.22 10.29 -179.37 -1.85 -28.06 16 4 C 0.29 12.66 7.64 133.31 1.02 13.67 16 5 N -0.73 -24.46 5.65 -344.85 -1.95 -26.41 16 6 C 0.11 2.54 4.51 86.38 0.39 2.93 16 7 C 0.10 1.85 3.08 30.60 0.09 1.94 16 8 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 9 O -0.56 -11.23 13.12 -148.98 -1.95 -13.18 16 10 C -0.06 -0.73 6.31 71.98 0.45 -0.27 16 11 Cl -0.19 -3.49 29.00 -2.72 -0.08 -3.57 16 12 C -0.21 -9.59 9.24 22.23 0.21 -9.38 16 13 C -0.11 -5.64 8.73 22.64 0.20 -5.44 16 14 C 0.00 -0.09 5.58 -21.18 -0.12 -0.21 16 15 C -0.48 -25.25 8.14 23.39 0.19 -25.06 16 16 H 0.08 4.06 6.86 -2.91 -0.02 4.04 16 17 C 0.03 1.61 5.19 85.23 0.44 2.05 16 18 N -0.84 -43.15 10.94 21.82 0.24 -42.91 16 19 Si 0.98 37.72 29.59 68.60 2.03 39.75 16 20 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 21 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 22 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 23 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 24 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.07 2.81 6.77 -2.39 -0.02 2.79 16 26 H 0.40 13.15 8.59 -92.71 -0.80 12.35 16 27 H 0.07 1.43 7.90 -2.39 -0.02 1.41 16 28 H 0.07 1.51 7.90 -2.39 -0.02 1.49 16 29 H 0.39 5.25 9.04 -74.06 -0.67 4.58 16 30 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.12 4.66 6.64 -2.91 -0.02 4.64 16 33 H 0.11 6.07 6.25 -2.91 -0.02 6.05 16 34 H 0.28 13.25 8.30 -92.71 -0.77 12.48 16 Total: -1.00 -63.66 303.72 -0.03 -63.69 By element: Atomic # 1 Polarization: 31.52 SS G_CDS: -0.32 Total: 31.20 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: 3.85 Total: -20.50 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -3.56 Total: -97.38 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -1.95 Total: -13.18 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.75 kcal Atomic # 17 Polarization: -3.49 SS G_CDS: -0.08 Total: -3.57 kcal Total: -63.66 -0.03 -63.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158702207.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.418 kcal (2) G-P(sol) polarization free energy of solvation -63.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds