Wall clock time and date at job start Mon Mar 30 2020 00:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31486 * 119.81839 * 2 1 4 4 C 1.32737 * 121.73349 * 180.27454 * 3 2 1 5 5 N 1.38378 * 119.42957 * 179.97438 * 4 3 2 6 6 C 1.46502 * 119.99773 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.46643 * 180.02562 * 6 5 4 8 8 H 1.08995 * 109.47376 * 59.99839 * 7 6 5 9 9 O 1.42898 * 109.47207 * 299.99031 * 7 6 5 10 10 C 1.53003 * 109.46932 * 179.97438 * 7 6 5 11 11 Cl 1.80299 * 109.47417 * 184.99673 * 10 7 6 12 12 C 1.39704 * 121.13808 * 359.97438 * 4 3 2 13 13 C 1.36565 * 119.49748 * 0.02562 * 12 4 3 14 14 C 1.40761 * 119.81461 * 180.27122 * 2 1 3 15 15 C 1.41201 * 120.57004 * 359.74812 * 14 2 1 16 16 H 1.07992 * 119.99921 * 334.74467 * 15 14 2 17 17 C 1.39871 * 119.99816 * 154.74479 * 15 14 2 18 18 N 1.30903 * 120.00091 * 343.65019 * 17 15 14 19 19 Si 1.86795 * 119.99926 * 163.65273 * 17 15 14 20 20 H 1.48499 * 109.47193 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47367 * 119.99890 * 19 17 15 22 22 H 1.48503 * 109.47317 * 239.99737 * 19 17 15 23 23 H 1.09001 * 109.47479 * 269.72714 * 1 2 3 24 24 H 1.08995 * 109.47042 * 29.72777 * 1 2 3 25 25 H 1.09002 * 109.47106 * 149.72665 * 1 2 3 26 26 H 0.97001 * 119.99679 * 0.02562 * 5 4 3 27 27 H 1.09004 * 109.46631 * 299.99975 * 6 5 4 28 28 H 1.08995 * 109.47366 * 60.00051 * 6 5 4 29 29 H 0.96698 * 114.00336 * 300.00685 * 9 7 6 30 30 H 1.09002 * 109.47329 * 305.00093 * 10 7 6 31 31 H 1.09000 * 109.47395 * 64.99627 * 10 7 6 32 32 H 1.08009 * 120.25322 * 180.02562 * 12 4 3 33 33 H 1.07991 * 120.79705 * 179.97438 * 13 12 4 34 34 H 0.97001 * 120.00164 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1408 0.0000 4 6 3.4874 1.1851 -0.0054 5 7 4.1267 2.4124 -0.0057 6 6 5.5903 2.4759 -0.0122 7 6 6.0372 3.9391 -0.0104 8 1 5.6560 4.4344 0.8825 9 8 5.5270 4.5944 -1.1733 10 6 7.5658 4.0055 -0.0166 11 17 8.0935 5.7230 0.1335 12 6 4.2494 0.0142 -0.0108 13 6 3.6199 -1.1977 -0.0111 14 6 2.2069 -1.2213 -0.0058 15 6 1.5091 -2.4488 -0.0062 16 1 0.5084 -2.5013 0.3965 17 6 2.1140 -3.5969 -0.5283 18 7 3.1698 -3.4895 -1.2946 19 14 1.4150 -5.2832 -0.1321 20 1 0.2286 -5.1329 0.7482 21 1 1.0150 -5.9616 -1.3911 22 1 2.4461 -6.0959 0.5620 23 1 -0.3634 -0.0049 1.0276 24 1 -0.3633 0.8924 -0.5096 25 1 -0.3633 -0.8875 -0.5181 26 1 3.6057 3.2306 -0.0016 27 1 5.9795 1.9764 0.8750 28 1 5.9716 1.9802 -0.9049 29 1 5.8258 4.2058 -2.0068 30 1 7.9579 3.4303 0.8222 31 1 7.9438 3.5896 -0.9505 32 1 5.3282 0.0670 -0.0148 33 1 4.1882 -2.1160 -0.0157 34 1 3.5891 -4.2857 -1.6569 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158702208.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:10 Heat of formation + Delta-G solvation = -59.171955 kcal Electronic energy + Delta-G solvation = -17954.381806 eV Core-core repulsion = 14911.417823 eV Total energy + Delta-G solvation = -3042.963982 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.54575 -39.07954 -36.82994 -36.38928 -35.20720 -32.94461 -32.47221 -31.14462 -28.68355 -27.09454 -25.60512 -23.28453 -22.81197 -21.65347 -19.09702 -18.29276 -17.56503 -17.21134 -16.88191 -16.57245 -15.56477 -15.38853 -15.20420 -14.95497 -14.44131 -14.28285 -14.07837 -13.67950 -13.52886 -13.42737 -13.15587 -12.82070 -12.80089 -12.58911 -12.31682 -12.17423 -11.77033 -11.50197 -11.35165 -11.17129 -10.92683 -10.36637 -9.99448 -9.87230 -8.63335 -8.35441 -6.07843 0.89697 1.14450 1.27520 1.43350 1.56047 1.58241 2.26459 2.59345 2.84808 3.42563 3.61840 3.77568 3.88331 3.94813 4.19556 4.35082 4.51942 4.60358 4.66459 4.70287 4.78557 4.98252 5.01246 5.08322 5.22848 5.39525 5.56390 5.67166 5.90774 6.03256 6.51822 6.64848 6.74828 6.87943 6.97540 7.15573 7.90481 8.43301 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.036810 B = 0.003583 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.486845 B = 7812.016177 C = 8390.900755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.020 3.980 3 N -0.539 5.539 4 C 0.288 3.712 5 N -0.731 5.731 6 C 0.110 3.890 7 C 0.103 3.897 8 H 0.107 0.893 9 O -0.563 6.563 10 C -0.056 4.056 11 Cl -0.191 7.191 12 C -0.214 4.214 13 C -0.109 4.109 14 C -0.002 4.002 15 C -0.482 4.482 16 H 0.081 0.919 17 C 0.033 3.967 18 N -0.839 5.839 19 Si 0.978 3.022 20 H -0.258 1.258 21 H -0.270 1.270 22 H -0.268 1.268 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.396 0.604 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.389 0.611 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.114 0.886 34 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.814 8.115 1.477 12.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.118 4.118 3 N -0.256 5.256 4 C 0.053 3.947 5 N -0.370 5.370 6 C -0.015 4.015 7 C 0.043 3.957 8 H 0.125 0.875 9 O -0.370 6.370 10 C -0.120 4.120 11 Cl -0.165 7.165 12 C -0.238 4.238 13 C -0.136 4.136 14 C -0.007 4.007 15 C -0.513 4.513 16 H 0.099 0.901 17 C -0.180 4.180 18 N -0.467 5.467 19 Si 0.800 3.200 20 H -0.181 1.181 21 H -0.196 1.196 22 H -0.193 1.193 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.230 0.770 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.238 0.762 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.142 0.858 33 H 0.132 0.868 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.438 9.172 1.790 12.591 hybrid contribution 0.467 -1.641 -0.393 1.751 sum 8.905 7.531 1.398 11.746 Atomic orbital electron populations 1.20237 0.89218 1.01496 1.01246 1.21264 0.96397 0.87300 1.06823 1.66436 1.08352 1.31048 1.19793 1.18057 0.88058 0.86512 1.02025 1.43533 1.04735 1.03593 1.85152 1.21864 0.80627 0.96814 1.02231 1.22238 0.91669 0.91252 0.90530 0.87487 1.86631 1.74757 1.59114 1.16476 1.25104 0.95947 0.82929 1.07994 1.98732 1.91717 1.27185 1.98868 1.20989 0.99529 0.92179 1.11112 1.21311 0.94961 0.96734 1.00611 1.18507 0.92934 0.94008 0.95223 1.19577 1.02178 0.92899 1.36622 0.90111 1.26653 0.94652 1.04627 0.92047 1.69877 1.19949 1.32639 1.24202 0.85207 0.79267 0.76595 0.78940 1.18123 1.19552 1.19293 0.92039 0.92265 0.91546 0.76958 0.91209 0.91864 0.76193 0.85858 0.86363 0.85811 0.86822 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.74 9.57 71.24 0.68 -2.06 16 2 C 0.02 1.02 6.86 43.23 0.30 1.32 16 3 N -0.54 -26.20 10.29 -179.36 -1.85 -28.05 16 4 C 0.29 12.65 7.64 133.31 1.02 13.67 16 5 N -0.73 -24.41 5.60 -344.87 -1.93 -26.34 16 6 C 0.11 2.53 4.53 86.38 0.39 2.92 16 7 C 0.10 1.84 3.13 30.59 0.10 1.94 16 8 H 0.11 2.08 8.14 -2.39 -0.02 2.07 16 9 O -0.56 -11.51 12.92 -148.98 -1.92 -13.44 16 10 C -0.06 -0.73 6.31 71.98 0.45 -0.27 16 11 Cl -0.19 -3.48 29.00 -2.72 -0.08 -3.55 16 12 C -0.21 -9.59 9.24 22.23 0.21 -9.38 16 13 C -0.11 -5.63 8.73 22.64 0.20 -5.44 16 14 C 0.00 -0.09 5.58 -21.18 -0.12 -0.20 16 15 C -0.48 -25.26 8.13 23.39 0.19 -25.07 16 16 H 0.08 4.06 6.87 -2.91 -0.02 4.04 16 17 C 0.03 1.63 5.18 85.23 0.44 2.07 16 18 N -0.84 -43.10 10.95 21.82 0.24 -42.86 16 19 Si 0.98 37.71 29.59 68.60 2.03 39.74 16 20 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 21 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 22 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 23 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 24 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.07 2.81 6.77 -2.39 -0.02 2.79 16 26 H 0.40 13.18 8.46 -92.71 -0.78 12.40 16 27 H 0.07 1.53 7.90 -2.39 -0.02 1.51 16 28 H 0.06 1.40 7.90 -2.39 -0.02 1.38 16 29 H 0.39 5.68 9.05 -74.06 -0.67 5.01 16 30 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.12 4.65 6.64 -2.91 -0.02 4.63 16 33 H 0.11 6.04 6.26 -2.92 -0.02 6.02 16 34 H 0.28 13.25 8.30 -92.71 -0.77 12.48 16 Total: -1.00 -63.47 303.44 0.03 -63.44 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: -0.31 Total: 31.58 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: 3.86 Total: -20.52 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -3.54 Total: -97.25 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -1.92 Total: -13.44 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.74 kcal Atomic # 17 Polarization: -3.48 SS G_CDS: -0.08 Total: -3.55 kcal Total: -63.47 0.03 -63.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158702208.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.263 kcal (2) G-P(sol) polarization free energy of solvation -63.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds