Wall clock time and date at job start Mon Mar 30 2020 01:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42891 * 113.99865 * 2 1 4 4 H 1.08999 * 109.47727 * 330.00405 * 3 2 1 5 5 C 1.53006 * 109.47223 * 90.00393 * 3 2 1 6 6 C 1.53010 * 109.47371 * 210.00349 * 3 2 1 7 7 N 1.46495 * 109.47032 * 65.00113 * 6 3 2 8 8 C 1.38400 * 120.00102 * 180.02562 * 7 6 3 9 9 N 1.32745 * 119.43954 * 0.02562 * 8 7 6 10 10 C 1.31464 * 121.74642 * 179.97438 * 9 8 7 11 11 C 1.40799 * 120.38744 * 0.02562 * 10 9 8 12 12 C 1.41194 * 120.56227 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00149 * 23.66769 * 12 11 10 14 14 C 1.39867 * 119.99558 * 203.65793 * 12 11 10 15 15 N 1.30898 * 120.00485 * 17.64350 * 14 12 11 16 16 Si 1.86806 * 119.99684 * 197.63806 * 14 12 11 17 17 H 1.48503 * 109.47125 * 60.00648 * 16 14 12 18 18 H 1.48501 * 109.46876 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47500 * 300.00424 * 16 14 12 20 20 C 1.41276 * 118.86671 * 0.02562 * 11 10 9 21 21 C 1.36670 * 118.40646 * 359.97438 * 20 11 10 22 22 Cl 1.73598 * 120.26501 * 179.97438 * 21 20 11 23 23 H 1.08999 * 109.47169 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46614 * 299.99322 * 1 2 3 25 25 H 1.08998 * 109.47549 * 59.99405 * 1 2 3 26 26 H 1.09001 * 109.47355 * 179.97438 * 5 3 2 27 27 H 1.08993 * 109.46812 * 299.99947 * 5 3 2 28 28 H 1.09005 * 109.46622 * 59.99825 * 5 3 2 29 29 H 1.09003 * 109.46429 * 305.00288 * 6 3 2 30 30 H 1.08997 * 109.46733 * 185.00535 * 6 3 2 31 31 H 0.97001 * 119.99771 * 359.97438 * 7 6 3 32 32 H 1.07998 * 119.80846 * 180.28467 * 10 9 8 33 33 H 0.96998 * 120.00561 * 179.97438 * 15 14 12 34 34 H 1.08004 * 120.79914 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5137 5 6 2.2177 1.7713 1.4425 6 6 3.3589 1.2633 -0.7214 7 7 3.1476 0.9332 -2.1329 8 6 4.2295 0.8372 -2.9906 9 7 5.4539 1.0460 -2.5223 10 6 6.5136 0.9661 -3.2963 11 6 6.3759 0.6530 -4.6621 12 6 7.5114 0.5657 -5.4967 13 1 8.4810 0.3569 -5.0692 14 6 7.3805 0.7494 -6.8770 15 7 6.3128 1.3313 -7.3616 16 14 8.7297 0.1645 -8.0292 17 1 8.9085 -1.3019 -7.8779 18 1 8.3524 0.4756 -9.4314 19 1 10.0007 0.8553 -7.6942 20 6 5.0822 0.4277 -5.1832 21 6 4.0142 0.5231 -4.3357 22 17 2.4032 0.2564 -4.9249 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 2.6615 2.7669 1.4426 27 1 1.2570 1.8013 1.9564 28 1 2.8830 1.0773 1.9563 29 1 3.9931 0.5051 -0.2618 30 1 3.8426 2.2370 -0.6443 31 1 2.2494 0.7811 -2.4662 32 1 7.4957 1.1375 -2.8813 33 1 6.2222 1.4591 -8.3188 34 1 4.9405 0.1859 -6.2262 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158812697.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:33 Heat of formation + Delta-G solvation = -31.002345 kcal Electronic energy + Delta-G solvation = -18136.249996 eV Core-core repulsion = 15094.507540 eV Total energy + Delta-G solvation = -3041.742456 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.87812 -38.19574 -35.54864 -35.07904 -33.62183 -31.65805 -30.48736 -29.11810 -26.84518 -25.92006 -24.26251 -22.10457 -21.05751 -20.82476 -17.42941 -16.90264 -16.60098 -16.00251 -15.21401 -15.03414 -14.59621 -14.25044 -13.74888 -13.47789 -13.15610 -12.79797 -12.55184 -12.33127 -12.24129 -11.82446 -11.74468 -11.39002 -11.37361 -11.17934 -10.96283 -10.70674 -10.65475 -10.37133 -9.83702 -9.65132 -9.45786 -8.79104 -8.25953 -8.11703 -6.90419 -6.66252 -4.28437 2.54008 2.83442 3.06190 3.08395 3.20435 3.23089 3.77806 3.90662 4.15924 4.58741 4.89999 5.12521 5.17976 5.26355 5.35147 5.55542 5.57498 5.64898 5.76759 5.98275 6.08032 6.10419 6.24291 6.45556 6.65686 6.96207 7.09191 7.17596 7.22485 7.66593 7.71292 8.13517 8.38468 8.45406 8.70306 8.74548 9.56128 10.14489 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.033537 B = 0.004573 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.697443 B = 6120.995456 C = 6770.258728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.072 3.928 4 H 0.062 0.938 5 C -0.169 4.169 6 C 0.152 3.848 7 N -0.738 5.738 8 C 0.292 3.708 9 N -0.504 5.504 10 C 0.015 3.985 11 C 0.037 3.963 12 C -0.454 4.454 13 H 0.082 0.918 14 C 0.074 3.926 15 N -0.799 5.799 16 Si 0.911 3.089 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.265 1.265 20 C -0.088 4.088 21 C -0.103 4.103 22 Cl -0.116 7.116 23 H 0.083 0.917 24 H 0.037 0.963 25 H 0.040 0.960 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.397 0.603 32 H 0.134 0.866 33 H 0.283 0.717 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.046 0.111 8.242 11.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.013 3.987 4 H 0.080 0.920 5 C -0.227 4.227 6 C 0.027 3.973 7 N -0.378 5.378 8 C 0.059 3.941 9 N -0.220 5.220 10 C -0.144 4.144 11 C 0.032 3.968 12 C -0.484 4.484 13 H 0.100 0.900 14 C -0.144 4.144 15 N -0.425 5.425 16 Si 0.735 3.265 17 H -0.188 1.188 18 H -0.204 1.204 19 H -0.190 1.190 20 C -0.115 4.115 21 C -0.135 4.135 22 Cl -0.088 7.088 23 H 0.102 0.898 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.233 0.767 32 H 0.152 0.848 33 H 0.094 0.906 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.957 0.260 8.994 12.011 hybrid contribution -0.262 -0.214 -1.719 1.752 sum -8.218 0.046 7.275 10.976 Atomic orbital electron populations 1.22766 0.81722 1.02533 0.99615 1.88010 1.19054 1.27618 1.95006 1.22478 0.95575 0.84766 0.95833 0.92037 1.22185 1.02213 1.01994 0.96352 1.21019 0.93595 1.00741 0.81956 1.43633 1.05917 1.81483 1.06808 1.17422 0.87192 1.03695 0.85815 1.66760 0.97171 1.19257 1.38781 1.22353 0.94693 1.05815 0.91493 1.18290 0.92838 0.93021 0.92675 1.19294 0.95060 1.42958 0.91116 0.89971 1.25890 0.96735 0.92464 0.99262 1.69788 1.27553 1.29816 1.15301 0.86323 0.81232 0.80401 0.78542 1.18821 1.20382 1.18971 1.21298 0.90413 0.99939 0.99878 1.20918 0.84815 1.14422 0.93395 1.98235 1.25957 1.95783 1.88819 0.89847 0.94444 0.94125 0.91303 0.92545 0.91452 0.92150 0.91695 0.76747 0.84830 0.90641 0.84289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.82 101.05 1.09 1.41 16 2 O -0.38 -5.32 10.29 -35.23 -0.36 -5.68 16 3 C 0.07 0.93 2.75 -26.72 -0.07 0.86 16 4 H 0.06 0.75 7.79 -51.93 -0.40 0.34 16 5 C -0.17 -1.77 9.53 37.16 0.35 -1.42 16 6 C 0.15 2.51 5.33 -4.04 -0.02 2.49 16 7 N -0.74 -14.26 5.59 -60.32 -0.34 -14.59 16 8 C 0.29 6.73 7.48 -155.06 -1.16 5.57 16 9 N -0.50 -12.02 9.52 -11.75 -0.11 -12.13 16 10 C 0.02 0.37 10.97 -16.74 -0.18 0.18 16 11 C 0.04 0.97 5.59 -106.65 -0.60 0.37 16 12 C -0.45 -11.53 9.06 -37.85 -0.34 -11.87 16 13 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 14 C 0.07 1.79 5.17 -17.34 -0.09 1.71 16 15 N -0.80 -20.14 10.92 55.54 0.61 -19.54 16 16 Si 0.91 18.20 29.59 -169.99 -5.03 13.17 16 17 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 18 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 19 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 20 C -0.09 -2.25 8.53 -38.99 -0.33 -2.59 16 21 C -0.10 -2.43 6.32 -39.57 -0.25 -2.68 16 22 Cl -0.12 -2.33 27.56 -51.86 -1.43 -3.76 16 23 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.04 0.32 7.87 -51.93 -0.41 -0.09 16 25 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.51 7.87 -51.93 -0.41 0.10 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.40 7.24 7.08 -40.82 -0.29 6.95 16 32 H 0.13 2.97 8.06 -52.49 -0.42 2.55 16 33 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 34 H 0.14 3.67 6.19 -52.48 -0.32 3.34 16 LS Contribution 306.19 15.07 4.61 4.61 Total: -1.00 -27.50 306.19 -7.99 -35.49 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -4.34 Total: 8.39 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -1.60 Total: -5.97 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.16 Total: -46.26 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.36 Total: -5.68 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -1.43 Total: -3.76 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.50 -7.99 -35.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158812697.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.489 kcal (2) G-P(sol) polarization free energy of solvation -27.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds