Wall clock time and date at job start Mon Mar 30 2020 01:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42891 * 113.99865 * 2 1 4 4 H 1.08999 * 109.47727 * 330.00405 * 3 2 1 5 5 C 1.53006 * 109.47223 * 90.00393 * 3 2 1 6 6 C 1.53010 * 109.47371 * 210.00349 * 3 2 1 7 7 N 1.46495 * 109.47032 * 65.00113 * 6 3 2 8 8 C 1.38400 * 120.00102 * 180.02562 * 7 6 3 9 9 N 1.32745 * 119.43954 * 0.02562 * 8 7 6 10 10 C 1.31464 * 121.74642 * 179.97438 * 9 8 7 11 11 C 1.40799 * 120.38744 * 0.02562 * 10 9 8 12 12 C 1.41194 * 120.56227 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00149 * 23.66769 * 12 11 10 14 14 C 1.39867 * 119.99558 * 203.65793 * 12 11 10 15 15 N 1.30898 * 120.00485 * 17.64350 * 14 12 11 16 16 Si 1.86806 * 119.99684 * 197.63806 * 14 12 11 17 17 H 1.48503 * 109.47125 * 60.00648 * 16 14 12 18 18 H 1.48501 * 109.46876 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47500 * 300.00424 * 16 14 12 20 20 C 1.41276 * 118.86671 * 0.02562 * 11 10 9 21 21 C 1.36670 * 118.40646 * 359.97438 * 20 11 10 22 22 Cl 1.73598 * 120.26501 * 179.97438 * 21 20 11 23 23 H 1.08999 * 109.47169 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46614 * 299.99322 * 1 2 3 25 25 H 1.08998 * 109.47549 * 59.99405 * 1 2 3 26 26 H 1.09001 * 109.47355 * 179.97438 * 5 3 2 27 27 H 1.08993 * 109.46812 * 299.99947 * 5 3 2 28 28 H 1.09005 * 109.46622 * 59.99825 * 5 3 2 29 29 H 1.09003 * 109.46429 * 305.00288 * 6 3 2 30 30 H 1.08997 * 109.46733 * 185.00535 * 6 3 2 31 31 H 0.97001 * 119.99771 * 359.97438 * 7 6 3 32 32 H 1.07998 * 119.80846 * 180.28467 * 10 9 8 33 33 H 0.96998 * 120.00561 * 179.97438 * 15 14 12 34 34 H 1.08004 * 120.79914 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5137 5 6 2.2177 1.7713 1.4425 6 6 3.3589 1.2633 -0.7214 7 7 3.1476 0.9332 -2.1329 8 6 4.2295 0.8372 -2.9906 9 7 5.4539 1.0460 -2.5223 10 6 6.5136 0.9661 -3.2963 11 6 6.3759 0.6530 -4.6621 12 6 7.5114 0.5657 -5.4967 13 1 8.4810 0.3569 -5.0692 14 6 7.3805 0.7494 -6.8770 15 7 6.3128 1.3313 -7.3616 16 14 8.7297 0.1645 -8.0292 17 1 8.9085 -1.3019 -7.8779 18 1 8.3524 0.4756 -9.4314 19 1 10.0007 0.8553 -7.6942 20 6 5.0822 0.4277 -5.1832 21 6 4.0142 0.5231 -4.3357 22 17 2.4032 0.2564 -4.9249 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 2.6615 2.7669 1.4426 27 1 1.2570 1.8013 1.9564 28 1 2.8830 1.0773 1.9563 29 1 3.9931 0.5051 -0.2618 30 1 3.8426 2.2370 -0.6443 31 1 2.2494 0.7811 -2.4662 32 1 7.4957 1.1375 -2.8813 33 1 6.2222 1.4591 -8.3188 34 1 4.9405 0.1859 -6.2262 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158812697.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:33 Heat of formation + Delta-G solvation = -46.946640 kcal Electronic energy + Delta-G solvation = -18136.941392 eV Core-core repulsion = 15094.507540 eV Total energy + Delta-G solvation = -3042.433853 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.58278 -39.36322 -37.29600 -36.69266 -35.30261 -32.89431 -32.36441 -30.80291 -27.87007 -27.26935 -25.90452 -23.76050 -22.79262 -22.15109 -19.30124 -18.39804 -17.74128 -17.66015 -16.83343 -16.10856 -16.00614 -15.89542 -15.33279 -14.92457 -14.73396 -14.09770 -13.93070 -13.61477 -13.59007 -13.31971 -13.16747 -12.95423 -12.79006 -12.67749 -12.43442 -12.26258 -12.03094 -11.72100 -11.56392 -11.24371 -10.60069 -10.51952 -10.12743 -9.98953 -8.71677 -8.44463 -6.18155 0.65949 1.00176 1.41652 1.43644 1.53841 1.57981 2.24086 2.61646 2.74315 2.84473 3.65174 3.83979 4.10974 4.12115 4.30809 4.49812 4.51480 4.57170 4.74202 4.76555 4.80310 4.87188 4.91194 5.02454 5.09379 5.23093 5.28938 5.33583 5.79746 5.80533 6.28824 6.33814 6.59181 6.75091 6.83932 6.89396 7.72226 8.34739 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.033537 B = 0.004573 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.697443 B = 6120.995456 C = 6770.258728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.078 3.922 4 H 0.074 0.926 5 C -0.164 4.164 6 C 0.150 3.850 7 N -0.730 5.730 8 C 0.291 3.709 9 N -0.511 5.511 10 C 0.008 3.992 11 C 0.010 3.990 12 C -0.483 4.483 13 H 0.087 0.913 14 C 0.035 3.965 15 N -0.830 5.830 16 Si 0.983 3.017 17 H -0.262 1.262 18 H -0.272 1.272 19 H -0.258 1.258 20 C -0.104 4.104 21 C -0.115 4.115 22 Cl -0.087 7.087 23 H 0.092 0.908 24 H 0.057 0.943 25 H 0.044 0.956 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.402 0.598 32 H 0.149 0.851 33 H 0.289 0.711 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.721 0.215 8.752 12.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C 0.020 3.980 4 H 0.092 0.908 5 C -0.221 4.221 6 C 0.026 3.974 7 N -0.370 5.370 8 C 0.056 3.944 9 N -0.227 5.227 10 C -0.150 4.150 11 C 0.005 3.995 12 C -0.514 4.514 13 H 0.105 0.895 14 C -0.179 4.179 15 N -0.456 5.456 16 Si 0.804 3.196 17 H -0.186 1.186 18 H -0.196 1.196 19 H -0.182 1.182 20 C -0.131 4.131 21 C -0.148 4.148 22 Cl -0.059 7.059 23 H 0.110 0.890 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.239 0.761 32 H 0.166 0.834 33 H 0.099 0.901 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.666 0.370 9.537 12.891 hybrid contribution -0.204 -0.245 -1.803 1.831 sum -8.870 0.125 7.734 11.769 Atomic orbital electron populations 1.22962 0.79820 1.03598 1.00800 1.87965 1.21191 1.28134 1.95250 1.22416 0.93660 0.84923 0.97029 0.90838 1.22145 1.03261 1.02249 0.94489 1.21162 0.95910 0.99946 0.80421 1.43753 1.05169 1.80477 1.07621 1.17729 0.87871 1.02489 0.86302 1.66823 0.97441 1.19751 1.38724 1.22614 0.95591 1.05540 0.91271 1.18588 0.93415 0.93972 0.93559 1.19577 0.95257 1.44324 0.92215 0.89481 1.26716 0.99041 0.91849 1.00318 1.69846 1.29346 1.30485 1.15970 0.85228 0.78279 0.79700 0.76408 1.18616 1.19631 1.18188 1.21248 0.91215 1.01126 0.99550 1.20997 0.86001 1.14129 0.93661 1.98229 1.23475 1.95596 1.88574 0.88974 0.92460 0.93691 0.90212 0.90636 0.92082 0.93854 0.91715 0.76111 0.83370 0.90067 0.85684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.82 113.37 1.23 1.67 16 2 O -0.41 -10.68 10.29 -148.98 -1.53 -12.22 16 3 C 0.08 1.87 2.75 30.60 0.08 1.95 16 4 H 0.07 1.60 7.79 -2.39 -0.02 1.58 16 5 C -0.16 -3.03 9.53 71.98 0.69 -2.34 16 6 C 0.15 4.82 5.33 86.38 0.46 5.28 16 7 N -0.73 -27.64 5.59 -344.75 -1.93 -29.56 16 8 C 0.29 13.38 7.48 133.33 1.00 14.38 16 9 N -0.51 -24.48 9.52 -191.09 -1.82 -26.29 16 10 C 0.01 0.40 10.97 85.37 0.94 1.34 16 11 C 0.01 0.55 5.59 -21.18 -0.12 0.43 16 12 C -0.48 -24.95 9.06 23.39 0.21 -24.74 16 13 H 0.09 4.24 7.90 -2.91 -0.02 4.21 16 14 C 0.04 1.72 5.17 85.23 0.44 2.16 16 15 N -0.83 -42.39 10.92 21.82 0.24 -42.16 16 16 Si 0.98 37.11 29.59 68.60 2.03 39.14 16 17 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 18 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16 19 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 20 C -0.10 -5.43 8.53 22.65 0.19 -5.24 16 21 C -0.12 -5.46 6.32 22.28 0.14 -5.32 16 22 Cl -0.09 -3.43 27.56 -2.72 -0.07 -3.50 16 23 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.06 0.82 7.87 -2.39 -0.02 0.80 16 25 H 0.04 0.77 8.08 -2.39 -0.02 0.75 16 26 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 1.13 7.87 -2.39 -0.02 1.11 16 28 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.40 14.17 7.08 -92.71 -0.66 13.51 16 32 H 0.15 6.66 8.06 -2.91 -0.02 6.64 16 33 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 34 H 0.13 6.79 6.19 -2.91 -0.02 6.77 16 Total: -1.00 -58.87 306.19 2.63 -56.24 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: 0.46 Total: 28.78 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 5.26 Total: -10.43 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -3.51 Total: -98.01 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -1.53 Total: -12.22 kcal Atomic # 14 Polarization: 37.11 SS G_CDS: 2.03 Total: 39.14 kcal Atomic # 17 Polarization: -3.43 SS G_CDS: -0.07 Total: -3.50 kcal Total: -58.87 2.63 -56.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158812697.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.292 kcal (2) G-P(sol) polarization free energy of solvation -58.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds