Wall clock time and date at job start Mon Mar 30 2020 01:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47240 * 2 1 4 4 H 1.09000 * 109.46936 * 305.73262 * 3 2 1 5 5 C 1.50702 * 109.47156 * 185.73696 * 3 2 1 6 6 H 1.08007 * 119.99858 * 335.21235 * 5 3 2 7 7 C 1.37872 * 120.00319 * 155.21663 * 5 3 2 8 8 N 1.31523 * 119.99648 * 355.61998 * 7 5 3 9 9 Si 1.86797 * 120.00405 * 175.34956 * 7 5 3 10 10 H 1.48506 * 109.46900 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47184 * 119.99677 * 9 7 5 12 12 H 1.48505 * 109.47160 * 240.00169 * 9 7 5 13 13 N 1.46498 * 109.46941 * 65.73891 * 3 2 1 14 14 C 1.39313 * 119.99567 * 274.99869 * 13 3 2 15 15 N 1.32275 * 119.72137 * 359.97438 * 14 13 3 16 16 C 1.32031 * 121.69149 * 179.97438 * 15 14 13 17 17 C 1.38116 * 120.93512 * 359.97438 * 16 15 14 18 18 Cl 1.73604 * 120.33007 * 180.02562 * 17 16 15 19 19 C 1.38939 * 119.34229 * 0.02562 * 17 16 15 20 20 C 1.38705 * 118.44794 * 359.75110 * 19 17 16 21 21 O 1.36012 * 120.48968 * 180.26820 * 20 19 17 22 22 C 1.42901 * 116.99993 * 0.20438 * 21 20 19 23 23 H 1.08994 * 109.46983 * 300.00126 * 1 2 3 24 24 H 1.09000 * 109.46760 * 59.99824 * 1 2 3 25 25 H 1.08997 * 109.46904 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47351 * 240.00459 * 2 1 3 27 27 H 1.08999 * 109.47373 * 120.00616 * 2 1 3 28 28 H 0.96997 * 119.99869 * 5.00072 * 8 7 5 29 29 H 0.96996 * 120.00081 * 95.00077 * 13 3 2 30 30 H 1.07994 * 119.53530 * 179.97438 * 16 15 14 31 31 H 1.08001 * 120.77334 * 180.02562 * 19 17 16 32 32 H 1.09004 * 109.47221 * 180.02562 * 22 21 20 33 33 H 1.09001 * 109.47515 * 300.00206 * 22 21 20 34 34 H 1.09009 * 109.46936 * 60.00159 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5953 1.9851 -0.8342 5 6 3.5404 1.4449 -0.1420 6 1 4.1136 0.5839 0.1690 7 6 4.1813 2.5460 -0.6689 8 7 3.4787 3.5591 -1.1269 9 14 6.0475 2.6024 -0.7252 10 1 6.5982 1.3507 -0.1461 11 1 6.4964 2.7358 -2.1344 12 1 6.5316 3.7657 0.0608 13 7 1.6678 2.0921 1.2592 14 6 0.4110 2.6775 1.3960 15 7 -0.4415 2.6441 0.3851 16 6 -1.6423 3.1860 0.4723 17 6 -2.0562 3.8123 1.6317 18 17 -3.6389 4.5189 1.7293 19 6 -1.1933 3.8711 2.7190 20 6 0.0601 3.2891 2.6001 21 8 0.9358 3.3177 3.6404 22 6 0.4992 3.9631 4.8383 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.5137 3.5640 -1.0285 29 1 2.2962 2.1145 1.9977 30 1 -2.3104 3.1389 -0.3749 31 1 -1.4932 4.3547 3.6369 32 1 1.2909 3.9153 5.5861 33 1 0.2644 5.0058 4.6245 34 1 -0.3906 3.4608 5.2181 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049133.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:29 Heat of formation + Delta-G solvation = -12.574905 kcal Electronic energy + Delta-G solvation = -18945.457475 eV Core-core repulsion = 15904.514093 eV Total energy + Delta-G solvation = -3040.943382 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.31236 -37.87032 -36.59662 -35.78711 -32.64892 -31.71637 -31.20286 -28.78756 -27.26170 -26.18147 -23.22595 -22.65288 -22.12793 -19.97457 -18.07210 -17.51876 -16.70543 -16.35969 -15.68906 -14.91930 -14.49523 -14.19085 -13.85691 -13.82538 -13.51243 -13.02313 -12.78601 -12.42252 -12.28130 -11.85625 -11.49370 -11.21344 -11.01875 -10.84579 -10.80730 -10.70708 -10.40042 -10.20725 -9.99244 -9.26149 -9.07628 -8.91043 -8.64601 -8.44410 -6.60401 -6.53153 -4.35268 1.61525 1.67380 2.46303 3.36415 3.37820 3.43774 3.52922 4.09212 4.24473 4.39969 4.93901 5.06006 5.11864 5.21331 5.27501 5.42888 5.50421 5.67295 6.00204 6.04342 6.08236 6.21149 6.26346 6.59592 6.72097 6.85868 6.98012 7.02780 7.26890 7.48112 7.79524 8.10272 8.29014 8.40927 8.68607 8.97719 9.45462 10.83165 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.020895 B = 0.005867 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.704412 B = 4771.283355 C = 5176.512619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 C 0.245 3.755 4 H 0.060 0.940 5 C -0.608 4.608 6 H 0.056 0.944 7 C 0.032 3.968 8 N -0.889 5.889 9 Si 1.074 2.926 10 H -0.287 1.287 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.674 5.674 14 C 0.411 3.589 15 N -0.497 5.497 16 C 0.137 3.863 17 C -0.146 4.146 18 Cl -0.086 7.086 19 C -0.119 4.119 20 C 0.002 3.998 21 O -0.311 6.311 22 C 0.031 3.969 23 H 0.045 0.955 24 H 0.057 0.943 25 H 0.026 0.974 26 H 0.058 0.942 27 H 0.042 0.958 28 H 0.278 0.722 29 H 0.400 0.600 30 H 0.156 0.844 31 H 0.136 0.864 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.891 0.358 8.527 12.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.156 4.156 3 C 0.145 3.855 4 H 0.078 0.922 5 C -0.647 4.647 6 H 0.074 0.926 7 C -0.177 4.177 8 N -0.522 5.522 9 Si 0.901 3.099 10 H -0.213 1.213 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.302 5.302 14 C 0.168 3.832 15 N -0.218 5.218 16 C -0.021 4.021 17 C -0.180 4.180 18 Cl -0.058 7.058 19 C -0.146 4.146 20 C -0.050 4.050 21 O -0.223 6.223 22 C -0.064 4.064 23 H 0.064 0.936 24 H 0.076 0.924 25 H 0.045 0.955 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.237 0.763 30 H 0.173 0.827 31 H 0.153 0.847 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.165 0.711 7.073 10.093 hybrid contribution -1.773 -0.144 1.896 2.600 sum -8.938 0.567 8.969 12.674 Atomic orbital electron populations 1.21847 0.97157 0.98426 1.02058 1.21830 0.94217 0.99258 1.00317 1.19004 0.94944 0.88588 0.82976 0.92205 1.22191 0.91226 1.04173 1.47070 0.92564 1.25995 1.07180 0.92476 0.92048 1.70691 1.09834 1.32189 1.39484 0.83485 0.73848 0.75622 0.76897 1.21287 1.21092 1.21262 1.47051 1.09308 1.55206 1.18629 1.18521 0.88972 0.89788 0.85945 1.67782 1.03099 1.23174 1.27705 1.22266 0.92268 0.92300 0.95293 1.21179 0.88803 1.10221 0.97764 1.98302 1.25515 1.83486 1.98532 1.21064 0.92548 1.01777 0.99184 1.19366 0.90710 1.05234 0.89725 1.86065 1.40087 1.75056 1.21109 1.22966 1.01237 0.96750 0.85488 0.93556 0.92424 0.95493 0.92373 0.93920 0.90962 0.76311 0.82715 0.84658 0.88457 0.93058 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 8.46 37.16 0.31 -2.32 16 2 C -0.12 -2.49 5.58 -26.73 -0.15 -2.64 16 3 C 0.24 5.88 1.95 -69.08 -0.13 5.75 16 4 H 0.06 1.61 6.09 -51.93 -0.32 1.29 16 5 C -0.61 -15.97 8.50 -34.44 -0.29 -16.27 16 6 H 0.06 1.47 7.81 -52.48 -0.41 1.06 16 7 C 0.03 0.87 5.46 -17.82 -0.10 0.78 16 8 N -0.89 -25.81 13.63 55.43 0.76 -25.06 16 9 Si 1.07 24.03 29.91 -169.99 -5.08 18.94 16 10 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.67 -14.98 5.16 -54.89 -0.28 -15.27 16 14 C 0.41 8.44 6.09 -154.67 -0.94 7.50 16 15 N -0.50 -9.92 6.43 -12.25 -0.08 -10.00 16 16 C 0.14 2.33 10.97 -17.51 -0.19 2.14 16 17 C -0.15 -2.31 6.34 -39.37 -0.25 -2.56 16 18 Cl -0.09 -1.16 28.98 -51.86 -1.50 -2.67 16 19 C -0.12 -1.88 8.94 -39.15 -0.35 -2.23 16 20 C 0.00 0.04 6.72 -38.92 -0.26 -0.22 16 21 O -0.31 -5.19 9.74 -19.78 -0.19 -5.39 16 22 C 0.03 0.36 9.83 101.05 0.99 1.35 16 23 H 0.05 0.91 5.57 -51.93 -0.29 0.62 16 24 H 0.06 1.12 7.72 -51.93 -0.40 0.72 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.28 8.24 6.66 -40.82 -0.27 7.97 16 29 H 0.40 8.84 7.94 -40.82 -0.32 8.51 16 30 H 0.16 2.25 8.06 -52.49 -0.42 1.83 16 31 H 0.14 1.77 6.44 -52.49 -0.34 1.43 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.55 7.69 -51.93 -0.40 0.15 16 34 H 0.05 0.51 7.71 -51.92 -0.40 0.11 16 LS Contribution 298.26 15.07 4.49 4.49 Total: -1.00 -28.42 298.26 -7.31 -35.73 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -4.06 Total: 7.92 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -1.36 Total: -8.72 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.39 Total: -50.32 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.19 Total: -5.39 kcal Atomic # 14 Polarization: 24.03 SS G_CDS: -5.08 Total: 18.94 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.50 Total: -2.67 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.42 -7.31 -35.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049133.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.160 kcal (2) G-P(sol) polarization free energy of solvation -28.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds