Wall clock time and date at job start Mon Mar 30 2020 01:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47240 * 2 1 4 4 H 1.09000 * 109.46936 * 305.73262 * 3 2 1 5 5 C 1.50702 * 109.47156 * 185.73696 * 3 2 1 6 6 H 1.08007 * 119.99858 * 335.21235 * 5 3 2 7 7 C 1.37872 * 120.00319 * 155.21663 * 5 3 2 8 8 N 1.31523 * 119.99648 * 355.61998 * 7 5 3 9 9 Si 1.86797 * 120.00405 * 175.34956 * 7 5 3 10 10 H 1.48506 * 109.46900 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47184 * 119.99677 * 9 7 5 12 12 H 1.48505 * 109.47160 * 240.00169 * 9 7 5 13 13 N 1.46498 * 109.46941 * 65.73891 * 3 2 1 14 14 C 1.39313 * 119.99567 * 274.99869 * 13 3 2 15 15 N 1.32275 * 119.72137 * 359.97438 * 14 13 3 16 16 C 1.32031 * 121.69149 * 179.97438 * 15 14 13 17 17 C 1.38116 * 120.93512 * 359.97438 * 16 15 14 18 18 Cl 1.73604 * 120.33007 * 180.02562 * 17 16 15 19 19 C 1.38939 * 119.34229 * 0.02562 * 17 16 15 20 20 C 1.38705 * 118.44794 * 359.75110 * 19 17 16 21 21 O 1.36012 * 120.48968 * 180.26820 * 20 19 17 22 22 C 1.42901 * 116.99993 * 0.20438 * 21 20 19 23 23 H 1.08994 * 109.46983 * 300.00126 * 1 2 3 24 24 H 1.09000 * 109.46760 * 59.99824 * 1 2 3 25 25 H 1.08997 * 109.46904 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47351 * 240.00459 * 2 1 3 27 27 H 1.08999 * 109.47373 * 120.00616 * 2 1 3 28 28 H 0.96997 * 119.99869 * 5.00072 * 8 7 5 29 29 H 0.96996 * 120.00081 * 95.00077 * 13 3 2 30 30 H 1.07994 * 119.53530 * 179.97438 * 16 15 14 31 31 H 1.08001 * 120.77334 * 180.02562 * 19 17 16 32 32 H 1.09004 * 109.47221 * 180.02562 * 22 21 20 33 33 H 1.09001 * 109.47515 * 300.00206 * 22 21 20 34 34 H 1.09009 * 109.46936 * 60.00159 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5953 1.9851 -0.8342 5 6 3.5404 1.4449 -0.1420 6 1 4.1136 0.5839 0.1690 7 6 4.1813 2.5460 -0.6689 8 7 3.4787 3.5591 -1.1269 9 14 6.0475 2.6024 -0.7252 10 1 6.5982 1.3507 -0.1461 11 1 6.4964 2.7358 -2.1344 12 1 6.5316 3.7657 0.0608 13 7 1.6678 2.0921 1.2592 14 6 0.4110 2.6775 1.3960 15 7 -0.4415 2.6441 0.3851 16 6 -1.6423 3.1860 0.4723 17 6 -2.0562 3.8123 1.6317 18 17 -3.6389 4.5189 1.7293 19 6 -1.1933 3.8711 2.7190 20 6 0.0601 3.2891 2.6001 21 8 0.9358 3.3177 3.6404 22 6 0.4992 3.9631 4.8383 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.5137 3.5640 -1.0285 29 1 2.2962 2.1145 1.9977 30 1 -2.3104 3.1389 -0.3749 31 1 -1.4932 4.3547 3.6369 32 1 1.2909 3.9153 5.5861 33 1 0.2644 5.0058 4.6245 34 1 -0.3906 3.4608 5.2181 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049133.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:29 Heat of formation + Delta-G solvation = -29.283169 kcal Electronic energy + Delta-G solvation = -18946.182000 eV Core-core repulsion = 15904.514093 eV Total energy + Delta-G solvation = -3041.667907 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.68129 -39.15753 -38.09836 -37.20387 -34.50714 -33.35671 -32.56995 -30.26098 -28.33658 -27.95368 -25.05465 -24.02553 -23.58356 -21.70121 -19.55436 -19.03989 -18.25867 -17.86260 -16.90710 -16.26845 -16.02819 -15.65554 -15.48660 -15.40713 -14.97013 -14.54823 -14.32714 -13.98064 -13.68588 -13.14505 -12.81141 -12.60054 -12.54787 -12.49317 -12.24276 -12.07079 -12.01562 -11.91187 -11.61654 -10.92911 -10.69773 -10.47754 -10.40495 -10.10912 -8.66884 -8.10167 -6.47020 0.27987 0.28222 1.18965 1.54813 1.61206 1.79224 2.28550 2.48680 2.57779 2.83296 3.29002 3.63007 3.85590 4.06133 4.13547 4.33807 4.36806 4.37925 4.42149 4.59657 4.67434 4.75642 4.89865 5.00099 5.15807 5.25416 5.28298 5.39567 5.58690 5.84067 6.15761 6.20606 6.51591 6.54614 6.82715 7.39637 7.42016 8.70215 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.020895 B = 0.005867 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.704412 B = 4771.283355 C = 5176.512619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.113 4.113 3 C 0.255 3.745 4 H 0.025 0.975 5 C -0.616 4.616 6 H 0.053 0.947 7 C -0.015 4.015 8 N -0.920 5.920 9 Si 1.120 2.880 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.283 1.283 13 N -0.690 5.690 14 C 0.382 3.618 15 N -0.518 5.518 16 C 0.121 3.879 17 C -0.133 4.133 18 Cl -0.058 7.058 19 C -0.113 4.113 20 C 0.001 3.999 21 O -0.332 6.332 22 C 0.020 3.980 23 H 0.039 0.961 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.044 0.956 28 H 0.262 0.738 29 H 0.398 0.602 30 H 0.176 0.824 31 H 0.168 0.832 32 H 0.119 0.881 33 H 0.061 0.939 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.947 0.574 10.087 14.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.152 4.152 3 C 0.153 3.847 4 H 0.043 0.957 5 C -0.654 4.654 6 H 0.071 0.929 7 C -0.217 4.217 8 N -0.556 5.556 9 Si 0.942 3.058 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.209 1.209 13 N -0.319 5.319 14 C 0.142 3.858 15 N -0.238 5.238 16 C -0.037 4.037 17 C -0.166 4.166 18 Cl -0.029 7.029 19 C -0.139 4.139 20 C -0.051 4.051 21 O -0.245 6.245 22 C -0.074 4.074 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.234 0.766 30 H 0.193 0.807 31 H 0.185 0.815 32 H 0.137 0.863 33 H 0.080 0.920 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.283 0.932 8.652 12.014 hybrid contribution -1.673 -0.152 1.525 2.269 sum -9.956 0.780 10.177 14.259 Atomic orbital electron populations 1.21675 0.95367 0.99644 1.01300 1.21754 0.95791 0.97574 1.00086 1.18671 0.93589 0.89604 0.82840 0.95680 1.22476 0.92678 1.03817 1.46472 0.92887 1.27311 1.10855 0.92094 0.91417 1.70819 1.08914 1.33585 1.42237 0.82899 0.69315 0.76419 0.77174 1.19328 1.20649 1.20910 1.46296 1.10579 1.57384 1.17651 1.18607 0.88563 0.91205 0.87473 1.67690 1.04107 1.23730 1.28308 1.22636 0.91742 0.92619 0.96691 1.21311 0.89843 1.08313 0.97116 1.98319 1.23327 1.82841 1.98437 1.21384 0.91404 1.00842 1.00286 1.19344 0.91595 1.04734 0.89472 1.86050 1.40598 1.75716 1.22168 1.23335 1.02983 0.97117 0.83964 0.94181 0.93268 0.93107 0.92848 0.93676 0.92743 0.76634 0.80733 0.81494 0.86303 0.92040 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.68 8.46 71.98 0.61 -4.07 16 2 C -0.11 -4.88 5.58 30.60 0.17 -4.71 16 3 C 0.25 12.67 1.95 44.25 0.09 12.76 16 4 H 0.03 1.42 6.09 -2.39 -0.01 1.41 16 5 C -0.62 -33.21 8.50 25.60 0.22 -32.99 16 6 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 7 C -0.01 -0.80 5.46 84.65 0.46 -0.34 16 8 N -0.92 -55.30 13.63 21.45 0.29 -55.01 16 9 Si 1.12 48.83 29.91 68.60 2.05 50.88 16 10 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 11 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 12 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 13 N -0.69 -31.60 5.16 -327.57 -1.69 -33.29 16 14 C 0.38 15.90 6.09 133.09 0.81 16.71 16 15 N -0.52 -20.92 6.43 -192.67 -1.24 -22.16 16 16 C 0.12 4.00 10.97 84.63 0.93 4.93 16 17 C -0.13 -3.90 6.34 22.41 0.14 -3.76 16 18 Cl -0.06 -1.37 28.98 -2.72 -0.08 -1.45 16 19 C -0.11 -3.28 8.94 22.55 0.20 -3.08 16 20 C 0.00 0.03 6.72 22.70 0.15 0.19 16 21 O -0.33 -10.75 9.74 -93.69 -0.91 -11.66 16 22 C 0.02 0.41 9.83 113.37 1.11 1.53 16 23 H 0.04 1.57 5.57 -2.39 -0.01 1.56 16 24 H 0.05 1.93 7.72 -2.39 -0.02 1.91 16 25 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 27 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.26 16.29 6.66 -92.71 -0.62 15.67 16 29 H 0.40 18.19 7.94 -92.71 -0.74 17.46 16 30 H 0.18 4.87 8.06 -2.91 -0.02 4.84 16 31 H 0.17 3.71 6.44 -2.91 -0.02 3.69 16 32 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.06 1.13 7.69 -2.39 -0.02 1.11 16 34 H 0.07 1.15 7.71 -2.38 -0.02 1.13 16 Total: -1.00 -62.87 298.26 3.86 -59.01 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.54 Total: 26.52 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 4.89 Total: -12.84 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -2.64 Total: -110.45 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -0.91 Total: -11.66 kcal Atomic # 14 Polarization: 48.83 SS G_CDS: 2.05 Total: 50.88 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.08 Total: -1.45 kcal Total: -62.87 3.86 -59.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049133.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.726 kcal (2) G-P(sol) polarization free energy of solvation -62.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds