Wall clock time and date at job start Mon Mar 30 2020 01:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47084 * 2 1 4 4 H 1.09002 * 109.47078 * 305.54842 * 3 2 1 5 5 C 1.50696 * 109.47346 * 185.54562 * 3 2 1 6 6 H 1.07997 * 120.00456 * 245.59944 * 5 3 2 7 7 C 1.37882 * 119.99910 * 65.60021 * 5 3 2 8 8 N 1.31513 * 120.00109 * 196.24156 * 7 5 3 9 9 Si 1.86798 * 120.00067 * 16.23933 * 7 5 3 10 10 H 1.48498 * 109.47182 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.46900 * 300.00261 * 9 7 5 12 12 H 1.48505 * 109.46906 * 59.99923 * 9 7 5 13 13 N 1.46499 * 109.47074 * 65.54623 * 3 2 1 14 14 C 1.40079 * 119.99879 * 275.00094 * 13 3 2 15 15 C 1.38530 * 120.50063 * 359.97438 * 14 13 3 16 16 N 1.31990 * 120.73919 * 179.97438 * 15 14 13 17 17 C 1.32001 * 121.89051 * 0.02562 * 16 15 14 18 18 Cl 1.73597 * 119.53939 * 179.97438 * 17 16 15 19 19 C 1.38253 * 120.92374 * 359.97438 * 17 16 15 20 20 C 1.39000 * 119.16217 * 359.74259 * 19 17 16 21 21 O 1.35846 * 120.86156 * 180.25269 * 20 19 17 22 22 C 1.42901 * 117.00139 * 0.25029 * 21 20 19 23 23 H 1.09006 * 109.46908 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47632 * 300.00255 * 1 2 3 25 25 H 1.09005 * 109.47402 * 60.00372 * 1 2 3 26 26 H 1.09000 * 109.47676 * 240.00300 * 2 1 3 27 27 H 1.09005 * 109.47402 * 119.99627 * 2 1 3 28 28 H 0.97002 * 119.99751 * 354.85100 * 8 7 5 29 29 H 0.97000 * 119.99987 * 95.00016 * 13 3 2 30 30 H 1.08004 * 119.62573 * 0.02562 * 15 14 13 31 31 H 1.08007 * 120.41619 * 179.97438 * 19 17 16 32 32 H 1.09002 * 109.47208 * 300.00461 * 22 21 20 33 33 H 1.08999 * 109.46833 * 59.99904 * 22 21 20 34 34 H 1.08998 * 109.47206 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5977 1.9842 -0.8361 5 6 3.5406 1.4448 -0.1373 6 1 4.1566 1.8044 0.6737 7 6 4.1274 0.9879 -1.2984 8 7 5.4075 0.6869 -1.3139 9 14 3.1040 0.7962 -2.8493 10 1 3.9637 0.2932 -3.9506 11 1 2.0031 -0.1687 -2.5998 12 1 2.5317 2.1125 -3.2304 13 7 1.6636 2.0935 1.2573 14 6 0.3995 2.6823 1.3902 15 6 -0.5026 2.6555 0.3392 16 7 -1.6951 3.2083 0.4595 17 6 -2.0779 3.8052 1.5728 18 17 -3.6605 4.5129 1.6639 19 6 -1.2362 3.8747 2.6674 20 6 0.0272 3.3007 2.5878 21 8 0.8802 3.3443 3.6441 22 6 0.4151 3.9972 4.8271 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.9551 0.8564 -0.5314 29 1 2.2898 2.1168 1.9978 30 1 -0.2273 2.1761 -0.5886 31 1 -1.5578 4.3655 3.5742 32 1 0.1778 5.0364 4.5992 33 1 -0.4788 3.4923 5.1931 34 1 1.1917 3.9614 5.5911 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049483.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:43 Heat of formation + Delta-G solvation = -6.833871 kcal Electronic energy + Delta-G solvation = -18839.669696 eV Core-core repulsion = 15798.975264 eV Total energy + Delta-G solvation = -3040.694432 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.57801 -38.16380 -36.95502 -36.03488 -33.03435 -31.95871 -30.88271 -29.43702 -27.58851 -26.51765 -23.18192 -22.66790 -22.29886 -19.96419 -18.57297 -17.92529 -16.91196 -16.13801 -15.87219 -15.44694 -14.78416 -14.44156 -14.15896 -14.14215 -13.62411 -13.26397 -12.70936 -12.67245 -12.34036 -11.96723 -11.84094 -11.44958 -11.20481 -11.06900 -10.98114 -10.86546 -10.54816 -10.15136 -9.76386 -9.65038 -9.38197 -9.03738 -8.92650 -8.43475 -6.86238 -6.60860 -4.30883 1.30414 1.58302 2.13090 3.17701 3.27389 3.34291 3.48570 3.97034 4.02191 4.32873 4.73167 4.92628 5.03841 5.06476 5.06915 5.27877 5.37720 5.56260 5.67342 5.78966 5.86360 5.91980 6.01345 6.34225 6.53135 6.61977 6.69452 6.81438 7.17259 7.21301 7.52374 7.87063 8.08150 8.18981 8.40314 8.71393 9.39063 10.74409 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.022921 B = 0.005873 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.274960 B = 4766.382182 C = 5542.435688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.145 4.145 3 C 0.248 3.752 4 H 0.033 0.967 5 C -0.615 4.615 6 H 0.062 0.938 7 C 0.039 3.961 8 N -0.895 5.895 9 Si 1.037 2.963 10 H -0.281 1.281 11 H -0.267 1.267 12 H -0.278 1.278 13 N -0.694 5.694 14 C 0.176 3.824 15 C 0.050 3.950 16 N -0.454 5.454 17 C 0.124 3.876 18 Cl -0.056 7.056 19 C -0.192 4.192 20 C 0.078 3.922 21 O -0.309 6.309 22 C 0.030 3.970 23 H 0.042 0.958 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.270 0.730 29 H 0.403 0.597 30 H 0.176 0.824 31 H 0.140 0.860 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.551 4.877 8.756 16.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.184 4.184 3 C 0.144 3.856 4 H 0.050 0.950 5 C -0.653 4.653 6 H 0.080 0.920 7 C -0.168 4.168 8 N -0.528 5.528 9 Si 0.864 3.136 10 H -0.207 1.207 11 H -0.194 1.194 12 H -0.204 1.204 13 N -0.317 5.317 14 C 0.063 3.937 15 C -0.112 4.112 16 N -0.166 5.166 17 C -0.043 4.043 18 Cl -0.028 7.028 19 C -0.215 4.215 20 C 0.021 3.979 21 O -0.221 6.221 22 C -0.065 4.065 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.238 0.762 30 H 0.192 0.808 31 H 0.158 0.842 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.838 4.188 6.340 14.918 hybrid contribution 0.442 0.827 2.861 3.011 sum -12.396 5.014 9.201 16.232 Atomic orbital electron populations 1.22253 0.98014 1.00548 1.00935 1.22496 0.93261 1.00129 1.02537 1.19145 0.96601 0.88244 0.81584 0.94974 1.22022 0.89399 1.49611 1.04286 0.91955 1.25701 0.97594 0.92352 1.01142 1.70862 1.07071 1.40499 1.34380 0.84171 0.75754 0.77662 0.76021 1.20681 1.19353 1.20439 1.45279 1.10980 1.57513 1.17940 1.18638 0.89497 0.94031 0.91519 1.22430 0.87746 1.02158 0.98906 1.66809 1.17192 1.08329 1.24302 1.20703 0.88799 1.03129 0.91716 1.98339 1.24469 1.81981 1.97983 1.21425 0.93553 1.06135 1.00401 1.18566 0.90019 1.01148 0.88134 1.86028 1.40309 1.74662 1.21082 1.23034 1.01275 0.96772 0.85468 0.93895 0.92965 0.92963 0.90866 0.92465 0.91977 0.76162 0.80753 0.84250 0.92692 0.92722 0.88215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 8.23 37.15 0.31 -2.48 16 2 C -0.15 -2.94 5.27 -26.73 -0.14 -3.08 16 3 C 0.25 5.41 1.78 -69.08 -0.12 5.28 16 4 H 0.03 0.72 5.20 -51.93 -0.27 0.45 16 5 C -0.62 -15.95 9.01 -34.44 -0.31 -16.26 16 6 H 0.06 1.74 7.96 -52.49 -0.42 1.33 16 7 C 0.04 1.05 5.32 -17.82 -0.09 0.96 16 8 N -0.90 -25.96 13.70 55.43 0.76 -25.20 16 9 Si 1.04 23.35 26.27 -169.99 -4.47 18.88 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.27 -5.45 5.66 56.52 0.32 -5.13 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 13 N -0.69 -13.64 5.19 -53.03 -0.28 -13.92 16 14 C 0.18 3.18 5.55 -83.38 -0.46 2.72 16 15 C 0.05 0.90 7.92 -17.38 -0.14 0.76 16 16 N -0.45 -8.00 10.33 -10.27 -0.11 -8.11 16 17 C 0.12 1.97 7.27 -17.47 -0.13 1.85 16 18 Cl -0.06 -0.76 29.10 -51.86 -1.51 -2.27 16 19 C -0.19 -2.77 8.87 -39.29 -0.35 -3.12 16 20 C 0.08 1.25 6.75 -38.70 -0.26 0.99 16 21 O -0.31 -4.52 9.86 -19.26 -0.19 -4.71 16 22 C 0.03 0.29 9.84 101.05 0.99 1.28 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.91 5.37 -51.93 -0.28 0.63 16 25 H 0.05 0.87 6.41 -51.93 -0.33 0.53 16 26 H 0.07 1.55 4.73 -51.93 -0.25 1.31 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.27 7.80 8.73 -40.82 -0.36 7.45 16 29 H 0.40 7.91 7.99 -40.82 -0.33 7.59 16 30 H 0.18 3.13 4.02 -52.48 -0.21 2.91 16 31 H 0.14 1.59 6.46 -52.48 -0.34 1.25 16 32 H 0.05 0.47 7.70 -51.93 -0.40 0.07 16 33 H 0.05 0.46 7.72 -51.93 -0.40 0.06 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 286.86 15.07 4.32 4.32 Total: -1.00 -28.10 286.86 -5.89 -33.99 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -3.72 Total: 8.11 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -0.71 Total: -11.11 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: 0.38 Total: -47.23 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.19 Total: -4.71 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -4.47 Total: 18.88 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.51 Total: -2.27 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.10 -5.89 -33.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049483.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.159 kcal (2) G-P(sol) polarization free energy of solvation -28.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds