Wall clock time and date at job start Mon Mar 30 2020 01:02:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 C 1.53003 * 109.47084 * 2 1
4 4 H 1.09002 * 109.47078 * 305.54842 * 3 2 1
5 5 C 1.50696 * 109.47346 * 185.54562 * 3 2 1
6 6 H 1.07997 * 120.00456 * 245.59944 * 5 3 2
7 7 C 1.37882 * 119.99910 * 65.60021 * 5 3 2
8 8 N 1.31513 * 120.00109 * 196.24156 * 7 5 3
9 9 Si 1.86798 * 120.00067 * 16.23933 * 7 5 3
10 10 H 1.48498 * 109.47182 * 179.97438 * 9 7 5
11 11 H 1.48503 * 109.46900 * 300.00261 * 9 7 5
12 12 H 1.48505 * 109.46906 * 59.99923 * 9 7 5
13 13 N 1.46499 * 109.47074 * 65.54623 * 3 2 1
14 14 C 1.40079 * 119.99879 * 275.00094 * 13 3 2
15 15 C 1.38530 * 120.50063 * 359.97438 * 14 13 3
16 16 N 1.31990 * 120.73919 * 179.97438 * 15 14 13
17 17 C 1.32001 * 121.89051 * 0.02562 * 16 15 14
18 18 Cl 1.73597 * 119.53939 * 179.97438 * 17 16 15
19 19 C 1.38253 * 120.92374 * 359.97438 * 17 16 15
20 20 C 1.39000 * 119.16217 * 359.74259 * 19 17 16
21 21 O 1.35846 * 120.86156 * 180.25269 * 20 19 17
22 22 C 1.42901 * 117.00139 * 0.25029 * 21 20 19
23 23 H 1.09006 * 109.46908 * 179.97438 * 1 2 3
24 24 H 1.09001 * 109.47632 * 300.00255 * 1 2 3
25 25 H 1.09005 * 109.47402 * 60.00372 * 1 2 3
26 26 H 1.09000 * 109.47676 * 240.00300 * 2 1 3
27 27 H 1.09005 * 109.47402 * 119.99627 * 2 1 3
28 28 H 0.97002 * 119.99751 * 354.85100 * 8 7 5
29 29 H 0.97000 * 119.99987 * 95.00016 * 13 3 2
30 30 H 1.08004 * 119.62573 * 0.02562 * 15 14 13
31 31 H 1.08007 * 120.41619 * 179.97438 * 19 17 16
32 32 H 1.09002 * 109.47208 * 300.00461 * 22 21 20
33 33 H 1.08999 * 109.46833 * 59.99904 * 22 21 20
34 34 H 1.08998 * 109.47206 * 180.02562 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.5977 1.9842 -0.8361
5 6 3.5406 1.4448 -0.1373
6 1 4.1566 1.8044 0.6737
7 6 4.1274 0.9879 -1.2984
8 7 5.4075 0.6869 -1.3139
9 14 3.1040 0.7962 -2.8493
10 1 3.9637 0.2932 -3.9506
11 1 2.0031 -0.1687 -2.5998
12 1 2.5317 2.1125 -3.2304
13 7 1.6636 2.0935 1.2573
14 6 0.3995 2.6823 1.3902
15 6 -0.5026 2.6555 0.3392
16 7 -1.6951 3.2083 0.4595
17 6 -2.0779 3.8052 1.5728
18 17 -3.6605 4.5129 1.6639
19 6 -1.2362 3.8747 2.6674
20 6 0.0272 3.3007 2.5878
21 8 0.8802 3.3443 3.6441
22 6 0.4151 3.9972 4.8271
23 1 -0.3633 -1.0277 -0.0005
24 1 -0.3634 0.5139 0.8899
25 1 -0.3634 0.5138 -0.8900
26 1 1.8934 -0.5138 -0.8900
27 1 1.8933 -0.5138 0.8900
28 1 5.9551 0.8564 -0.5314
29 1 2.2898 2.1168 1.9978
30 1 -0.2273 2.1761 -0.5886
31 1 -1.5578 4.3655 3.5742
32 1 0.1778 5.0364 4.5992
33 1 -0.4788 3.4923 5.1931
34 1 1.1917 3.9614 5.5911
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001161049483.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:02:43
Heat of formation + Delta-G solvation = -26.247377 kcal
Electronic energy + Delta-G solvation = -18840.511529 eV
Core-core repulsion = 15798.975264 eV
Total energy + Delta-G solvation = -3041.536265 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 270.088 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-41.82491 -39.32574 -38.39433 -37.28992 -34.85094 -33.53996 -32.14850 -30.88083
-28.56864 -28.11475 -24.50037 -24.27367 -23.68746 -21.54435 -20.15233 -19.34283
-18.33246 -17.59961 -16.95080 -16.75042 -16.14931 -15.75331 -15.46248 -15.28505
-15.14845 -14.74019 -14.47506 -14.28278 -13.84975 -13.23292 -12.96885 -12.67952
-12.50522 -12.44934 -12.31603 -12.14253 -12.10964 -11.80968 -11.42863 -11.17450
-10.86995 -10.69435 -10.45428 -10.08661 -8.84053 -8.18294 -6.44541 0.06003
0.30252 0.93015 1.48439 1.55158 1.71331 2.13497 2.46246 2.58616
2.69007 3.02739 3.52421 3.76510 4.00333 4.18340 4.26821 4.37528
4.38104 4.42360 4.45748 4.52230 4.64322 4.73141 4.75088 5.12066
5.15696 5.25786 5.32299 5.56268 5.67341 5.94874 6.08353 6.29175
6.62140 6.74986 6.95691 7.34122 8.59681
Molecular weight = 270.09amu
Principal moments of inertia in cm(-1)
A = 0.022921 B = 0.005873 C = 0.005051
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1221.274960 B = 4766.382182 C = 5542.435688
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.140 4.140
3 C 0.255 3.745
4 H 0.036 0.964
5 C -0.613 4.613
6 H 0.026 0.974
7 C -0.009 4.009
8 N -0.932 5.932
9 Si 1.069 2.931
10 H -0.289 1.289
11 H -0.231 1.231
12 H -0.262 1.262
13 N -0.706 5.706
14 C 0.153 3.847
15 C 0.046 3.954
16 N -0.472 5.472
17 C 0.123 3.877
18 Cl -0.034 7.034
19 C -0.185 4.185
20 C 0.087 3.913
21 O -0.327 6.327
22 C 0.017 3.983
23 H 0.061 0.939
24 H 0.050 0.950
25 H 0.062 0.938
26 H 0.064 0.936
27 H 0.045 0.955
28 H 0.254 0.746
29 H 0.399 0.601
30 H 0.172 0.828
31 H 0.174 0.826
32 H 0.069 0.931
33 H 0.071 0.929
34 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.506 5.531 9.427 18.971
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.179 4.179
3 C 0.151 3.849
4 H 0.053 0.947
5 C -0.651 4.651
6 H 0.045 0.955
7 C -0.209 4.209
8 N -0.567 5.567
9 Si 0.889 3.111
10 H -0.215 1.215
11 H -0.155 1.155
12 H -0.187 1.187
13 N -0.331 5.331
14 C 0.043 3.957
15 C -0.116 4.116
16 N -0.185 5.185
17 C -0.045 4.045
18 Cl -0.006 7.006
19 C -0.208 4.208
20 C 0.030 3.970
21 O -0.240 6.240
22 C -0.077 4.077
23 H 0.080 0.920
24 H 0.068 0.932
25 H 0.081 0.919
26 H 0.083 0.917
27 H 0.064 0.936
28 H 0.063 0.937
29 H 0.233 0.767
30 H 0.189 0.811
31 H 0.191 0.809
32 H 0.087 0.913
33 H 0.090 0.910
34 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges -15.840 4.864 7.054 18.009
hybrid contribution 1.286 0.773 2.867 3.236
sum -14.554 5.636 9.922 18.494
Atomic orbital electron populations
1.22149 0.95345 1.01906 1.01378 1.22350 0.95551 0.98481 1.01552
1.18878 0.93568 0.89606 0.82885 0.94692 1.22244 0.91880 1.48083
1.02919 0.95535 1.27047 0.97689 0.91814 1.04305 1.70990 1.08328
1.43487 1.33852 0.83820 0.75564 0.79365 0.72337 1.21498 1.15457
1.18736 1.44945 1.12021 1.59114 1.16973 1.18755 0.88847 0.95282
0.92861 1.22360 0.87988 1.02411 0.98814 1.66840 1.17124 1.09255
1.25317 1.21099 0.89776 1.02017 0.91565 1.98350 1.22860 1.81455
1.97892 1.21700 0.92454 1.05376 1.01234 1.18678 0.90522 0.99852
0.87960 1.86035 1.40806 1.75131 1.22012 1.23425 1.02849 0.97367
0.84026 0.92022 0.93152 0.91945 0.91728 0.93577 0.93669 0.76680
0.81116 0.80902 0.91269 0.91038 0.86262
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.91 8.23 71.98 0.59 -4.31 16
2 C -0.14 -5.56 5.27 30.59 0.16 -5.40 16
3 C 0.26 11.12 1.78 44.24 0.08 11.20 16
4 H 0.04 1.53 5.20 -2.39 -0.01 1.51 16
5 C -0.61 -32.78 9.01 25.60 0.23 -32.55 16
6 H 0.03 1.56 7.96 -2.91 -0.02 1.54 16
7 C -0.01 -0.49 5.32 84.66 0.45 -0.04 16
8 N -0.93 -56.08 13.70 21.45 0.29 -55.78 16
9 Si 1.07 46.56 26.27 68.60 1.80 48.36 16
10 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16
11 H -0.23 -8.66 5.66 99.48 0.56 -8.10 16
12 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16
13 N -0.71 -27.85 5.19 -321.70 -1.67 -29.52 16
14 C 0.15 5.35 5.55 38.28 0.21 5.56 16
15 C 0.05 1.57 7.92 84.74 0.67 2.24 16
16 N -0.47 -15.64 10.33 -186.41 -1.93 -17.57 16
17 C 0.12 3.57 7.27 84.67 0.62 4.18 16
18 Cl -0.03 -0.81 29.10 -2.72 -0.08 -0.89 16
19 C -0.19 -4.75 8.87 22.46 0.20 -4.55 16
20 C 0.09 2.61 6.75 22.84 0.15 2.77 16
21 O -0.33 -8.99 9.86 -91.82 -0.91 -9.89 16
22 C 0.02 0.28 9.84 113.37 1.12 1.39 16
23 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16
24 H 0.05 1.66 5.37 -2.39 -0.01 1.65 16
25 H 0.06 1.91 6.41 -2.38 -0.02 1.89 16
26 H 0.06 2.64 4.73 -2.39 -0.01 2.63 16
27 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16
28 H 0.25 15.54 8.73 -92.71 -0.81 14.73 16
29 H 0.40 16.07 7.99 -92.71 -0.74 15.33 16
30 H 0.17 5.87 4.02 -2.91 -0.01 5.85 16
31 H 0.17 3.17 6.46 -2.91 -0.02 3.15 16
32 H 0.07 0.94 7.70 -2.39 -0.02 0.92 16
33 H 0.07 0.94 7.72 -2.39 -0.02 0.92 16
34 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16
Total: -1.00 -62.10 286.86 2.22 -59.88
By element:
Atomic # 1 Polarization: 24.69 SS G_CDS: 0.23 Total: 24.92 kcal
Atomic # 6 Polarization: -23.98 SS G_CDS: 4.48 Total: -19.50 kcal
Atomic # 7 Polarization: -99.57 SS G_CDS: -3.30 Total: -102.87 kcal
Atomic # 8 Polarization: -8.99 SS G_CDS: -0.91 Total: -9.89 kcal
Atomic # 14 Polarization: 46.56 SS G_CDS: 1.80 Total: 48.36 kcal
Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal
Total: -62.10 2.22 -59.88 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001161049483.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.629 kcal
(2) G-P(sol) polarization free energy of solvation -62.099 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.470 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.877 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.247 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds