Wall clock time and date at job start Mon Mar 30 2020 01:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47084 * 2 1 4 4 H 1.09002 * 109.47078 * 305.54842 * 3 2 1 5 5 C 1.50696 * 109.47346 * 185.54562 * 3 2 1 6 6 H 1.07997 * 120.00456 * 245.59944 * 5 3 2 7 7 C 1.37882 * 119.99910 * 65.60021 * 5 3 2 8 8 N 1.31513 * 120.00109 * 196.24156 * 7 5 3 9 9 Si 1.86798 * 120.00067 * 16.23933 * 7 5 3 10 10 H 1.48498 * 109.47182 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.46900 * 300.00261 * 9 7 5 12 12 H 1.48505 * 109.46906 * 59.99923 * 9 7 5 13 13 N 1.46499 * 109.47074 * 65.54623 * 3 2 1 14 14 C 1.40079 * 119.99879 * 275.00094 * 13 3 2 15 15 C 1.38530 * 120.50063 * 359.97438 * 14 13 3 16 16 N 1.31990 * 120.73919 * 179.97438 * 15 14 13 17 17 C 1.32001 * 121.89051 * 0.02562 * 16 15 14 18 18 Cl 1.73597 * 119.53939 * 179.97438 * 17 16 15 19 19 C 1.38253 * 120.92374 * 359.97438 * 17 16 15 20 20 C 1.39000 * 119.16217 * 359.74259 * 19 17 16 21 21 O 1.35846 * 120.86156 * 180.25269 * 20 19 17 22 22 C 1.42901 * 117.00139 * 0.25029 * 21 20 19 23 23 H 1.09006 * 109.46908 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47632 * 300.00255 * 1 2 3 25 25 H 1.09005 * 109.47402 * 60.00372 * 1 2 3 26 26 H 1.09000 * 109.47676 * 240.00300 * 2 1 3 27 27 H 1.09005 * 109.47402 * 119.99627 * 2 1 3 28 28 H 0.97002 * 119.99751 * 354.85100 * 8 7 5 29 29 H 0.97000 * 119.99987 * 95.00016 * 13 3 2 30 30 H 1.08004 * 119.62573 * 0.02562 * 15 14 13 31 31 H 1.08007 * 120.41619 * 179.97438 * 19 17 16 32 32 H 1.09002 * 109.47208 * 300.00461 * 22 21 20 33 33 H 1.08999 * 109.46833 * 59.99904 * 22 21 20 34 34 H 1.08998 * 109.47206 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5977 1.9842 -0.8361 5 6 3.5406 1.4448 -0.1373 6 1 4.1566 1.8044 0.6737 7 6 4.1274 0.9879 -1.2984 8 7 5.4075 0.6869 -1.3139 9 14 3.1040 0.7962 -2.8493 10 1 3.9637 0.2932 -3.9506 11 1 2.0031 -0.1687 -2.5998 12 1 2.5317 2.1125 -3.2304 13 7 1.6636 2.0935 1.2573 14 6 0.3995 2.6823 1.3902 15 6 -0.5026 2.6555 0.3392 16 7 -1.6951 3.2083 0.4595 17 6 -2.0779 3.8052 1.5728 18 17 -3.6605 4.5129 1.6639 19 6 -1.2362 3.8747 2.6674 20 6 0.0272 3.3007 2.5878 21 8 0.8802 3.3443 3.6441 22 6 0.4151 3.9972 4.8271 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.9551 0.8564 -0.5314 29 1 2.2898 2.1168 1.9978 30 1 -0.2273 2.1761 -0.5886 31 1 -1.5578 4.3655 3.5742 32 1 0.1778 5.0364 4.5992 33 1 -0.4788 3.4923 5.1931 34 1 1.1917 3.9614 5.5911 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049483.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:43 Heat of formation + Delta-G solvation = -26.247377 kcal Electronic energy + Delta-G solvation = -18840.511529 eV Core-core repulsion = 15798.975264 eV Total energy + Delta-G solvation = -3041.536265 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.82491 -39.32574 -38.39433 -37.28992 -34.85094 -33.53996 -32.14850 -30.88083 -28.56864 -28.11475 -24.50037 -24.27367 -23.68746 -21.54435 -20.15233 -19.34283 -18.33246 -17.59961 -16.95080 -16.75042 -16.14931 -15.75331 -15.46248 -15.28505 -15.14845 -14.74019 -14.47506 -14.28278 -13.84975 -13.23292 -12.96885 -12.67952 -12.50522 -12.44934 -12.31603 -12.14253 -12.10964 -11.80968 -11.42863 -11.17450 -10.86995 -10.69435 -10.45428 -10.08661 -8.84053 -8.18294 -6.44541 0.06003 0.30252 0.93015 1.48439 1.55158 1.71331 2.13497 2.46246 2.58616 2.69007 3.02739 3.52421 3.76510 4.00333 4.18340 4.26821 4.37528 4.38104 4.42360 4.45748 4.52230 4.64322 4.73141 4.75088 5.12066 5.15696 5.25786 5.32299 5.56268 5.67341 5.94874 6.08353 6.29175 6.62140 6.74986 6.95691 7.34122 8.59681 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.022921 B = 0.005873 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.274960 B = 4766.382182 C = 5542.435688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.140 4.140 3 C 0.255 3.745 4 H 0.036 0.964 5 C -0.613 4.613 6 H 0.026 0.974 7 C -0.009 4.009 8 N -0.932 5.932 9 Si 1.069 2.931 10 H -0.289 1.289 11 H -0.231 1.231 12 H -0.262 1.262 13 N -0.706 5.706 14 C 0.153 3.847 15 C 0.046 3.954 16 N -0.472 5.472 17 C 0.123 3.877 18 Cl -0.034 7.034 19 C -0.185 4.185 20 C 0.087 3.913 21 O -0.327 6.327 22 C 0.017 3.983 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.254 0.746 29 H 0.399 0.601 30 H 0.172 0.828 31 H 0.174 0.826 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.506 5.531 9.427 18.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.179 4.179 3 C 0.151 3.849 4 H 0.053 0.947 5 C -0.651 4.651 6 H 0.045 0.955 7 C -0.209 4.209 8 N -0.567 5.567 9 Si 0.889 3.111 10 H -0.215 1.215 11 H -0.155 1.155 12 H -0.187 1.187 13 N -0.331 5.331 14 C 0.043 3.957 15 C -0.116 4.116 16 N -0.185 5.185 17 C -0.045 4.045 18 Cl -0.006 7.006 19 C -0.208 4.208 20 C 0.030 3.970 21 O -0.240 6.240 22 C -0.077 4.077 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.233 0.767 30 H 0.189 0.811 31 H 0.191 0.809 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.840 4.864 7.054 18.009 hybrid contribution 1.286 0.773 2.867 3.236 sum -14.554 5.636 9.922 18.494 Atomic orbital electron populations 1.22149 0.95345 1.01906 1.01378 1.22350 0.95551 0.98481 1.01552 1.18878 0.93568 0.89606 0.82885 0.94692 1.22244 0.91880 1.48083 1.02919 0.95535 1.27047 0.97689 0.91814 1.04305 1.70990 1.08328 1.43487 1.33852 0.83820 0.75564 0.79365 0.72337 1.21498 1.15457 1.18736 1.44945 1.12021 1.59114 1.16973 1.18755 0.88847 0.95282 0.92861 1.22360 0.87988 1.02411 0.98814 1.66840 1.17124 1.09255 1.25317 1.21099 0.89776 1.02017 0.91565 1.98350 1.22860 1.81455 1.97892 1.21700 0.92454 1.05376 1.01234 1.18678 0.90522 0.99852 0.87960 1.86035 1.40806 1.75131 1.22012 1.23425 1.02849 0.97367 0.84026 0.92022 0.93152 0.91945 0.91728 0.93577 0.93669 0.76680 0.81116 0.80902 0.91269 0.91038 0.86262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 8.23 71.98 0.59 -4.31 16 2 C -0.14 -5.56 5.27 30.59 0.16 -5.40 16 3 C 0.26 11.12 1.78 44.24 0.08 11.20 16 4 H 0.04 1.53 5.20 -2.39 -0.01 1.51 16 5 C -0.61 -32.78 9.01 25.60 0.23 -32.55 16 6 H 0.03 1.56 7.96 -2.91 -0.02 1.54 16 7 C -0.01 -0.49 5.32 84.66 0.45 -0.04 16 8 N -0.93 -56.08 13.70 21.45 0.29 -55.78 16 9 Si 1.07 46.56 26.27 68.60 1.80 48.36 16 10 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.23 -8.66 5.66 99.48 0.56 -8.10 16 12 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 13 N -0.71 -27.85 5.19 -321.70 -1.67 -29.52 16 14 C 0.15 5.35 5.55 38.28 0.21 5.56 16 15 C 0.05 1.57 7.92 84.74 0.67 2.24 16 16 N -0.47 -15.64 10.33 -186.41 -1.93 -17.57 16 17 C 0.12 3.57 7.27 84.67 0.62 4.18 16 18 Cl -0.03 -0.81 29.10 -2.72 -0.08 -0.89 16 19 C -0.19 -4.75 8.87 22.46 0.20 -4.55 16 20 C 0.09 2.61 6.75 22.84 0.15 2.77 16 21 O -0.33 -8.99 9.86 -91.82 -0.91 -9.89 16 22 C 0.02 0.28 9.84 113.37 1.12 1.39 16 23 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 24 H 0.05 1.66 5.37 -2.39 -0.01 1.65 16 25 H 0.06 1.91 6.41 -2.38 -0.02 1.89 16 26 H 0.06 2.64 4.73 -2.39 -0.01 2.63 16 27 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.25 15.54 8.73 -92.71 -0.81 14.73 16 29 H 0.40 16.07 7.99 -92.71 -0.74 15.33 16 30 H 0.17 5.87 4.02 -2.91 -0.01 5.85 16 31 H 0.17 3.17 6.46 -2.91 -0.02 3.15 16 32 H 0.07 0.94 7.70 -2.39 -0.02 0.92 16 33 H 0.07 0.94 7.72 -2.39 -0.02 0.92 16 34 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -62.10 286.86 2.22 -59.88 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.23 Total: 24.92 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 4.48 Total: -19.50 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -3.30 Total: -102.87 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.91 Total: -9.89 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.80 Total: 48.36 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -62.10 2.22 -59.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049483.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.629 kcal (2) G-P(sol) polarization free energy of solvation -62.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds