Wall clock time and date at job start Mon Mar 30 2020 01:02:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53004 * 109.46905 * 2 1
4 4 H 1.09000 * 109.46936 * 305.73440 * 3 2 1
5 5 C 1.50702 * 109.47156 * 185.73875 * 3 2 1
6 6 H 1.08007 * 119.99858 * 335.21235 * 5 3 2
7 7 C 1.37872 * 120.00319 * 155.21663 * 5 3 2
8 8 N 1.31523 * 119.99648 * 355.61998 * 7 5 3
9 9 Si 1.86797 * 120.00405 * 175.34956 * 7 5 3
10 10 H 1.48506 * 109.46900 * 359.97438 * 9 7 5
11 11 H 1.48498 * 109.47557 * 119.99676 * 9 7 5
12 12 H 1.48505 * 109.47160 * 240.00169 * 9 7 5
13 13 N 1.46498 * 109.46941 * 65.74070 * 3 2 1
14 14 C 1.39325 * 119.99379 * 274.99603 * 13 3 2
15 15 N 1.32326 * 119.65642 * 0.02562 * 14 13 3
16 16 C 1.31986 * 121.68824 * 179.97438 * 15 14 13
17 17 C 1.38496 * 120.80349 * 359.97390 * 16 15 14
18 18 O 1.36012 * 120.38663 * 179.97438 * 17 16 15
19 19 C 1.42905 * 117.00027 * 359.97438 * 18 17 16
20 20 C 1.39227 * 119.23069 * 0.02607 * 17 16 15
21 21 C 1.38424 * 118.44704 * 359.72643 * 20 17 16
22 22 Cl 1.73597 * 120.43324 * 180.26653 * 21 20 17
23 23 H 1.08994 * 109.47016 * 299.99378 * 1 2 3
24 24 H 1.08992 * 109.47222 * 60.00144 * 1 2 3
25 25 H 1.09005 * 109.46415 * 180.02562 * 1 2 3
26 26 H 1.09004 * 109.46869 * 240.00654 * 2 1 3
27 27 H 1.08999 * 109.47686 * 120.00603 * 2 1 3
28 28 H 0.96997 * 119.99869 * 5.00072 * 8 7 5
29 29 H 0.96996 * 120.00081 * 95.00077 * 13 3 2
30 30 H 1.08007 * 119.59851 * 179.97438 * 16 15 14
31 31 H 1.08999 * 109.47125 * 179.97438 * 19 18 17
32 32 H 1.08994 * 109.47400 * 300.00492 * 19 18 17
33 33 H 1.09004 * 109.46544 * 60.00415 * 19 18 17
34 34 H 1.07992 * 120.77834 * 179.97438 * 20 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.5952 1.9851 -0.8342
5 6 3.5403 1.4450 -0.1421
6 1 4.1136 0.5841 0.1689
7 6 4.1811 2.5462 -0.6689
8 7 3.4784 3.5592 -1.1270
9 14 6.0474 2.6027 -0.7253
10 1 6.5982 1.3510 -0.1463
11 1 6.4963 2.7361 -2.1345
12 1 6.5314 3.7660 0.0607
13 7 1.6677 2.0921 1.2592
14 6 0.4108 2.6775 1.3960
15 7 -0.4414 2.6424 0.3842
16 6 -1.6421 3.1837 0.4701
17 6 -2.0553 3.8122 1.6330
18 8 -3.2944 4.3675 1.7119
19 6 -4.1250 4.2679 0.5534
20 6 -1.1872 3.8699 2.7199
21 6 0.0626 3.2875 2.5973
22 17 1.1832 3.3233 3.9226
23 1 -0.3633 0.5137 0.8900
24 1 -0.3633 0.5138 -0.8899
25 1 -0.3632 -1.0278 0.0005
26 1 1.8933 -0.5138 -0.8901
27 1 1.8934 -0.5139 0.8899
28 1 2.5135 3.5641 -1.0285
29 1 2.2962 2.1146 1.9977
30 1 -2.3106 3.1358 -0.3769
31 1 -5.0827 4.7496 0.7505
32 1 -3.6365 4.7602 -0.2874
33 1 -4.2896 3.2174 0.3137
34 1 -1.4834 4.3542 3.6386
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001161052830.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:02:38
Heat of formation + Delta-G solvation = -11.234801 kcal
Electronic energy + Delta-G solvation = -18867.281143 eV
Core-core repulsion = 15826.395872 eV
Total energy + Delta-G solvation = -3040.885271 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 270.088 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.27086 -38.17424 -36.20482 -35.84247 -32.51628 -31.87959 -31.53965 -28.55377
-27.29965 -26.04738 -23.45441 -22.77072 -21.97950 -20.00587 -17.96396 -17.67306
-16.69237 -16.37206 -15.66516 -14.80614 -14.54032 -14.30101 -13.83610 -13.64078
-13.58820 -12.93307 -12.79277 -12.58135 -12.25086 -11.82151 -11.72347 -11.35399
-11.04247 -10.83395 -10.75795 -10.71674 -10.39278 -10.20514 -9.94028 -9.07236
-9.02716 -8.99125 -8.70784 -8.44405 -6.61355 -6.53185 -4.35010 1.39762
1.86997 2.42305 3.36428 3.38182 3.53128 3.54338 4.09857 4.22371
4.40091 4.89868 5.00755 5.11207 5.18911 5.23971 5.43414 5.46330
5.72901 5.95962 6.01778 6.06117 6.13224 6.24939 6.53157 6.70104
6.83849 6.96652 7.05865 7.30465 7.49697 7.76789 8.08085 8.29207
8.38242 8.68649 8.96348 9.45762 10.83334
Molecular weight = 270.09amu
Principal moments of inertia in cm(-1)
A = 0.020007 B = 0.006253 C = 0.005721
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1399.205614 B = 4477.072070 C = 4892.653697
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.118 4.118
3 C 0.246 3.754
4 H 0.059 0.941
5 C -0.608 4.608
6 H 0.056 0.944
7 C 0.033 3.967
8 N -0.889 5.889
9 Si 1.073 2.927
10 H -0.287 1.287
11 H -0.285 1.285
12 H -0.286 1.286
13 N -0.683 5.683
14 C 0.401 3.599
15 N -0.489 5.489
16 C 0.083 3.917
17 C -0.013 4.013
18 O -0.320 6.320
19 C 0.030 3.970
20 C -0.050 4.050
21 C -0.144 4.144
22 Cl -0.066 7.066
23 H 0.046 0.954
24 H 0.055 0.945
25 H 0.026 0.974
26 H 0.057 0.943
27 H 0.042 0.958
28 H 0.278 0.722
29 H 0.397 0.603
30 H 0.154 0.846
31 H 0.095 0.905
32 H 0.053 0.947
33 H 0.052 0.948
34 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.772 -0.165 5.118 11.927
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.157 4.157
3 C 0.147 3.853
4 H 0.077 0.923
5 C -0.647 4.647
6 H 0.074 0.926
7 C -0.176 4.176
8 N -0.522 5.522
9 Si 0.900 3.100
10 H -0.213 1.213
11 H -0.211 1.211
12 H -0.212 1.212
13 N -0.312 5.312
14 C 0.161 3.839
15 N -0.209 5.209
16 C -0.078 4.078
17 C -0.062 4.062
18 O -0.233 6.233
19 C -0.066 4.066
20 C -0.077 4.077
21 C -0.180 4.180
22 Cl -0.038 7.038
23 H 0.065 0.935
24 H 0.074 0.926
25 H 0.045 0.955
26 H 0.076 0.924
27 H 0.061 0.939
28 H 0.090 0.910
29 H 0.235 0.765
30 H 0.171 0.829
31 H 0.113 0.887
32 H 0.071 0.929
33 H 0.070 0.930
34 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -9.117 0.309 3.899 9.920
hybrid contribution -1.341 -0.478 1.517 2.080
sum -10.458 -0.168 5.416 11.778
Atomic orbital electron populations
1.21842 0.97274 0.98366 1.01953 1.21830 0.94140 0.99364 1.00316
1.18962 0.94911 0.88500 0.82975 0.92325 1.22193 0.91243 1.04175
1.47089 0.92571 1.25983 1.07149 0.92466 0.92048 1.70692 1.09792
1.32185 1.39546 0.83500 0.73885 0.75669 0.76900 1.21275 1.21097
1.21212 1.47084 1.09377 1.55972 1.18753 1.18573 0.88792 0.89754
0.86815 1.67573 1.02951 1.22004 1.28371 1.22664 0.93592 0.95442
0.96053 1.19327 0.87212 1.03792 0.95904 1.85988 1.23434 1.75331
1.38586 1.22956 0.94136 1.01613 0.87885 1.20298 0.90510 0.98696
0.98176 1.20975 0.93725 1.12178 0.91149 1.98319 1.61465 1.97679
1.46334 0.93546 0.92562 0.95510 0.92409 0.93882 0.91005 0.76535
0.82900 0.88684 0.92863 0.92986 0.84254
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.62 8.46 37.16 0.31 -2.30 16
2 C -0.12 -2.50 5.58 -26.73 -0.15 -2.65 16
3 C 0.25 5.94 1.95 -69.08 -0.13 5.80 16
4 H 0.06 1.57 6.09 -51.93 -0.32 1.26 16
5 C -0.61 -16.04 8.50 -34.44 -0.29 -16.33 16
6 H 0.06 1.48 7.81 -52.48 -0.41 1.07 16
7 C 0.03 0.89 5.46 -17.82 -0.10 0.79 16
8 N -0.89 -25.82 13.63 55.43 0.76 -25.07 16
9 Si 1.07 24.13 29.91 -169.99 -5.08 19.04 16
10 H -0.29 -6.14 7.11 56.52 0.40 -5.73 16
11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
12 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16
13 N -0.68 -15.20 5.13 -54.98 -0.28 -15.48 16
14 C 0.40 8.26 6.07 -154.76 -0.94 7.32 16
15 N -0.49 -9.72 6.41 -12.24 -0.08 -9.80 16
16 C 0.08 1.38 10.21 -17.39 -0.18 1.20 16
17 C -0.01 -0.20 6.71 -39.12 -0.26 -0.46 16
18 O -0.32 -4.47 10.51 -19.78 -0.21 -4.67 16
19 C 0.03 0.29 9.82 101.05 0.99 1.28 16
20 C -0.05 -0.82 9.92 -39.15 -0.39 -1.21 16
21 C -0.14 -2.65 6.36 -39.17 -0.25 -2.90 16
22 Cl -0.07 -1.11 27.61 -51.86 -1.43 -2.54 16
23 H 0.05 0.91 5.57 -51.93 -0.29 0.62 16
24 H 0.06 1.09 7.72 -51.93 -0.40 0.69 16
25 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16
26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16
27 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16
28 H 0.28 8.23 6.66 -40.82 -0.27 7.95 16
29 H 0.40 8.76 7.25 -40.82 -0.30 8.46 16
30 H 0.15 2.06 6.30 -52.48 -0.33 1.73 16
31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16
32 H 0.05 0.49 7.68 -51.93 -0.40 0.09 16
33 H 0.05 0.45 7.67 -51.93 -0.40 0.06 16
34 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16
LS Contribution 296.93 15.07 4.47 4.47
Total: -1.00 -28.83 296.93 -7.26 -36.09
By element:
Atomic # 1 Polarization: 11.43 SS G_CDS: -4.02 Total: 7.41 kcal
Atomic # 6 Polarization: -8.07 SS G_CDS: -1.39 Total: -9.45 kcal
Atomic # 7 Polarization: -50.75 SS G_CDS: 0.39 Total: -50.35 kcal
Atomic # 8 Polarization: -4.47 SS G_CDS: -0.21 Total: -4.67 kcal
Atomic # 14 Polarization: 24.13 SS G_CDS: -5.08 Total: 19.04 kcal
Atomic # 17 Polarization: -1.11 SS G_CDS: -1.43 Total: -2.54 kcal
Total LS contribution 4.47 Total: 4.47 kcal
Total: -28.83 -7.26 -36.09 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001161052830.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.859 kcal
(2) G-P(sol) polarization free energy of solvation -28.834 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.975 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.094 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.235 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds