Wall clock time and date at job start Mon Mar 30 2020 01:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46905 * 2 1 4 4 H 1.09000 * 109.46936 * 305.73440 * 3 2 1 5 5 C 1.50702 * 109.47156 * 185.73875 * 3 2 1 6 6 H 1.08007 * 119.99858 * 335.21235 * 5 3 2 7 7 C 1.37872 * 120.00319 * 155.21663 * 5 3 2 8 8 N 1.31523 * 119.99648 * 355.61998 * 7 5 3 9 9 Si 1.86797 * 120.00405 * 175.34956 * 7 5 3 10 10 H 1.48506 * 109.46900 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47557 * 119.99676 * 9 7 5 12 12 H 1.48505 * 109.47160 * 240.00169 * 9 7 5 13 13 N 1.46498 * 109.46941 * 65.74070 * 3 2 1 14 14 C 1.39325 * 119.99379 * 274.99603 * 13 3 2 15 15 N 1.32326 * 119.65642 * 0.02562 * 14 13 3 16 16 C 1.31986 * 121.68824 * 179.97438 * 15 14 13 17 17 C 1.38496 * 120.80349 * 359.97390 * 16 15 14 18 18 O 1.36012 * 120.38663 * 179.97438 * 17 16 15 19 19 C 1.42905 * 117.00027 * 359.97438 * 18 17 16 20 20 C 1.39227 * 119.23069 * 0.02607 * 17 16 15 21 21 C 1.38424 * 118.44704 * 359.72643 * 20 17 16 22 22 Cl 1.73597 * 120.43324 * 180.26653 * 21 20 17 23 23 H 1.08994 * 109.47016 * 299.99378 * 1 2 3 24 24 H 1.08992 * 109.47222 * 60.00144 * 1 2 3 25 25 H 1.09005 * 109.46415 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46869 * 240.00654 * 2 1 3 27 27 H 1.08999 * 109.47686 * 120.00603 * 2 1 3 28 28 H 0.96997 * 119.99869 * 5.00072 * 8 7 5 29 29 H 0.96996 * 120.00081 * 95.00077 * 13 3 2 30 30 H 1.08007 * 119.59851 * 179.97438 * 16 15 14 31 31 H 1.08999 * 109.47125 * 179.97438 * 19 18 17 32 32 H 1.08994 * 109.47400 * 300.00492 * 19 18 17 33 33 H 1.09004 * 109.46544 * 60.00415 * 19 18 17 34 34 H 1.07992 * 120.77834 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5952 1.9851 -0.8342 5 6 3.5403 1.4450 -0.1421 6 1 4.1136 0.5841 0.1689 7 6 4.1811 2.5462 -0.6689 8 7 3.4784 3.5592 -1.1270 9 14 6.0474 2.6027 -0.7253 10 1 6.5982 1.3510 -0.1463 11 1 6.4963 2.7361 -2.1345 12 1 6.5314 3.7660 0.0607 13 7 1.6677 2.0921 1.2592 14 6 0.4108 2.6775 1.3960 15 7 -0.4414 2.6424 0.3842 16 6 -1.6421 3.1837 0.4701 17 6 -2.0553 3.8122 1.6330 18 8 -3.2944 4.3675 1.7119 19 6 -4.1250 4.2679 0.5534 20 6 -1.1872 3.8699 2.7199 21 6 0.0626 3.2875 2.5973 22 17 1.1832 3.3233 3.9226 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0278 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.5135 3.5641 -1.0285 29 1 2.2962 2.1146 1.9977 30 1 -2.3106 3.1358 -0.3769 31 1 -5.0827 4.7496 0.7505 32 1 -3.6365 4.7602 -0.2874 33 1 -4.2896 3.2174 0.3137 34 1 -1.4834 4.3542 3.6386 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161052830.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:38 Heat of formation + Delta-G solvation = -11.234801 kcal Electronic energy + Delta-G solvation = -18867.281143 eV Core-core repulsion = 15826.395872 eV Total energy + Delta-G solvation = -3040.885271 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.27086 -38.17424 -36.20482 -35.84247 -32.51628 -31.87959 -31.53965 -28.55377 -27.29965 -26.04738 -23.45441 -22.77072 -21.97950 -20.00587 -17.96396 -17.67306 -16.69237 -16.37206 -15.66516 -14.80614 -14.54032 -14.30101 -13.83610 -13.64078 -13.58820 -12.93307 -12.79277 -12.58135 -12.25086 -11.82151 -11.72347 -11.35399 -11.04247 -10.83395 -10.75795 -10.71674 -10.39278 -10.20514 -9.94028 -9.07236 -9.02716 -8.99125 -8.70784 -8.44405 -6.61355 -6.53185 -4.35010 1.39762 1.86997 2.42305 3.36428 3.38182 3.53128 3.54338 4.09857 4.22371 4.40091 4.89868 5.00755 5.11207 5.18911 5.23971 5.43414 5.46330 5.72901 5.95962 6.01778 6.06117 6.13224 6.24939 6.53157 6.70104 6.83849 6.96652 7.05865 7.30465 7.49697 7.76789 8.08085 8.29207 8.38242 8.68649 8.96348 9.45762 10.83334 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.020007 B = 0.006253 C = 0.005721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.205614 B = 4477.072070 C = 4892.653697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.118 4.118 3 C 0.246 3.754 4 H 0.059 0.941 5 C -0.608 4.608 6 H 0.056 0.944 7 C 0.033 3.967 8 N -0.889 5.889 9 Si 1.073 2.927 10 H -0.287 1.287 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.683 5.683 14 C 0.401 3.599 15 N -0.489 5.489 16 C 0.083 3.917 17 C -0.013 4.013 18 O -0.320 6.320 19 C 0.030 3.970 20 C -0.050 4.050 21 C -0.144 4.144 22 Cl -0.066 7.066 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.026 0.974 26 H 0.057 0.943 27 H 0.042 0.958 28 H 0.278 0.722 29 H 0.397 0.603 30 H 0.154 0.846 31 H 0.095 0.905 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.772 -0.165 5.118 11.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.157 4.157 3 C 0.147 3.853 4 H 0.077 0.923 5 C -0.647 4.647 6 H 0.074 0.926 7 C -0.176 4.176 8 N -0.522 5.522 9 Si 0.900 3.100 10 H -0.213 1.213 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.312 5.312 14 C 0.161 3.839 15 N -0.209 5.209 16 C -0.078 4.078 17 C -0.062 4.062 18 O -0.233 6.233 19 C -0.066 4.066 20 C -0.077 4.077 21 C -0.180 4.180 22 Cl -0.038 7.038 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.045 0.955 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.235 0.765 30 H 0.171 0.829 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.117 0.309 3.899 9.920 hybrid contribution -1.341 -0.478 1.517 2.080 sum -10.458 -0.168 5.416 11.778 Atomic orbital electron populations 1.21842 0.97274 0.98366 1.01953 1.21830 0.94140 0.99364 1.00316 1.18962 0.94911 0.88500 0.82975 0.92325 1.22193 0.91243 1.04175 1.47089 0.92571 1.25983 1.07149 0.92466 0.92048 1.70692 1.09792 1.32185 1.39546 0.83500 0.73885 0.75669 0.76900 1.21275 1.21097 1.21212 1.47084 1.09377 1.55972 1.18753 1.18573 0.88792 0.89754 0.86815 1.67573 1.02951 1.22004 1.28371 1.22664 0.93592 0.95442 0.96053 1.19327 0.87212 1.03792 0.95904 1.85988 1.23434 1.75331 1.38586 1.22956 0.94136 1.01613 0.87885 1.20298 0.90510 0.98696 0.98176 1.20975 0.93725 1.12178 0.91149 1.98319 1.61465 1.97679 1.46334 0.93546 0.92562 0.95510 0.92409 0.93882 0.91005 0.76535 0.82900 0.88684 0.92863 0.92986 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 8.46 37.16 0.31 -2.30 16 2 C -0.12 -2.50 5.58 -26.73 -0.15 -2.65 16 3 C 0.25 5.94 1.95 -69.08 -0.13 5.80 16 4 H 0.06 1.57 6.09 -51.93 -0.32 1.26 16 5 C -0.61 -16.04 8.50 -34.44 -0.29 -16.33 16 6 H 0.06 1.48 7.81 -52.48 -0.41 1.07 16 7 C 0.03 0.89 5.46 -17.82 -0.10 0.79 16 8 N -0.89 -25.82 13.63 55.43 0.76 -25.07 16 9 Si 1.07 24.13 29.91 -169.99 -5.08 19.04 16 10 H -0.29 -6.14 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.68 -15.20 5.13 -54.98 -0.28 -15.48 16 14 C 0.40 8.26 6.07 -154.76 -0.94 7.32 16 15 N -0.49 -9.72 6.41 -12.24 -0.08 -9.80 16 16 C 0.08 1.38 10.21 -17.39 -0.18 1.20 16 17 C -0.01 -0.20 6.71 -39.12 -0.26 -0.46 16 18 O -0.32 -4.47 10.51 -19.78 -0.21 -4.67 16 19 C 0.03 0.29 9.82 101.05 0.99 1.28 16 20 C -0.05 -0.82 9.92 -39.15 -0.39 -1.21 16 21 C -0.14 -2.65 6.36 -39.17 -0.25 -2.90 16 22 Cl -0.07 -1.11 27.61 -51.86 -1.43 -2.54 16 23 H 0.05 0.91 5.57 -51.93 -0.29 0.62 16 24 H 0.06 1.09 7.72 -51.93 -0.40 0.69 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.28 8.23 6.66 -40.82 -0.27 7.95 16 29 H 0.40 8.76 7.25 -40.82 -0.30 8.46 16 30 H 0.15 2.06 6.30 -52.48 -0.33 1.73 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.49 7.68 -51.93 -0.40 0.09 16 33 H 0.05 0.45 7.67 -51.93 -0.40 0.06 16 34 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 296.93 15.07 4.47 4.47 Total: -1.00 -28.83 296.93 -7.26 -36.09 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -4.02 Total: 7.41 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -1.39 Total: -9.45 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.39 Total: -50.35 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.21 Total: -4.67 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -5.08 Total: 19.04 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -1.43 Total: -2.54 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.83 -7.26 -36.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052830.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.859 kcal (2) G-P(sol) polarization free energy of solvation -28.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds