Wall clock time and date at job start Mon Mar 30 2020 01:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46905 * 2 1 4 4 H 1.09000 * 109.46936 * 305.73440 * 3 2 1 5 5 C 1.50702 * 109.47156 * 185.73875 * 3 2 1 6 6 H 1.08007 * 119.99858 * 335.21235 * 5 3 2 7 7 C 1.37872 * 120.00319 * 155.21663 * 5 3 2 8 8 N 1.31523 * 119.99648 * 355.61998 * 7 5 3 9 9 Si 1.86797 * 120.00405 * 175.34956 * 7 5 3 10 10 H 1.48506 * 109.46900 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47557 * 119.99676 * 9 7 5 12 12 H 1.48505 * 109.47160 * 240.00169 * 9 7 5 13 13 N 1.46498 * 109.46941 * 65.74070 * 3 2 1 14 14 C 1.39325 * 119.99379 * 274.99603 * 13 3 2 15 15 N 1.32326 * 119.65642 * 0.02562 * 14 13 3 16 16 C 1.31986 * 121.68824 * 179.97438 * 15 14 13 17 17 C 1.38496 * 120.80349 * 359.97390 * 16 15 14 18 18 O 1.36012 * 120.38663 * 179.97438 * 17 16 15 19 19 C 1.42905 * 117.00027 * 359.97438 * 18 17 16 20 20 C 1.39227 * 119.23069 * 0.02607 * 17 16 15 21 21 C 1.38424 * 118.44704 * 359.72643 * 20 17 16 22 22 Cl 1.73597 * 120.43324 * 180.26653 * 21 20 17 23 23 H 1.08994 * 109.47016 * 299.99378 * 1 2 3 24 24 H 1.08992 * 109.47222 * 60.00144 * 1 2 3 25 25 H 1.09005 * 109.46415 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46869 * 240.00654 * 2 1 3 27 27 H 1.08999 * 109.47686 * 120.00603 * 2 1 3 28 28 H 0.96997 * 119.99869 * 5.00072 * 8 7 5 29 29 H 0.96996 * 120.00081 * 95.00077 * 13 3 2 30 30 H 1.08007 * 119.59851 * 179.97438 * 16 15 14 31 31 H 1.08999 * 109.47125 * 179.97438 * 19 18 17 32 32 H 1.08994 * 109.47400 * 300.00492 * 19 18 17 33 33 H 1.09004 * 109.46544 * 60.00415 * 19 18 17 34 34 H 1.07992 * 120.77834 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5952 1.9851 -0.8342 5 6 3.5403 1.4450 -0.1421 6 1 4.1136 0.5841 0.1689 7 6 4.1811 2.5462 -0.6689 8 7 3.4784 3.5592 -1.1270 9 14 6.0474 2.6027 -0.7253 10 1 6.5982 1.3510 -0.1463 11 1 6.4963 2.7361 -2.1345 12 1 6.5314 3.7660 0.0607 13 7 1.6677 2.0921 1.2592 14 6 0.4108 2.6775 1.3960 15 7 -0.4414 2.6424 0.3842 16 6 -1.6421 3.1837 0.4701 17 6 -2.0553 3.8122 1.6330 18 8 -3.2944 4.3675 1.7119 19 6 -4.1250 4.2679 0.5534 20 6 -1.1872 3.8699 2.7199 21 6 0.0626 3.2875 2.5973 22 17 1.1832 3.3233 3.9226 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0278 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.5135 3.5641 -1.0285 29 1 2.2962 2.1146 1.9977 30 1 -2.3106 3.1358 -0.3769 31 1 -5.0827 4.7496 0.7505 32 1 -3.6365 4.7602 -0.2874 33 1 -4.2896 3.2174 0.3137 34 1 -1.4834 4.3542 3.6386 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161052830.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:38 Heat of formation + Delta-G solvation = -28.289186 kcal Electronic energy + Delta-G solvation = -18868.020676 eV Core-core repulsion = 15826.395872 eV Total energy + Delta-G solvation = -3041.624805 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.62146 -39.45503 -37.67649 -37.38925 -34.40955 -33.37164 -33.02846 -30.02340 -28.38283 -27.69892 -25.17330 -24.30218 -23.37897 -21.73747 -19.43283 -19.12165 -18.29770 -17.85754 -16.77856 -16.17682 -16.05123 -15.73055 -15.63718 -15.12940 -14.91658 -14.63056 -14.34977 -13.94706 -13.84309 -13.04606 -12.81627 -12.72222 -12.63450 -12.58462 -12.31445 -12.13206 -12.04777 -11.91983 -11.57957 -10.91504 -10.58362 -10.40348 -10.34587 -10.26938 -8.66698 -8.11295 -6.46878 0.03722 0.48421 1.05714 1.54497 1.60646 1.78623 2.39101 2.52572 2.60097 2.81020 3.27812 3.63412 3.74417 3.92951 4.25326 4.35856 4.41119 4.46357 4.50209 4.54530 4.68047 4.80473 4.84324 5.00268 5.14952 5.20669 5.27253 5.39564 5.57818 5.84917 6.16624 6.33223 6.51564 6.53167 6.74845 7.37469 7.41716 8.70456 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.020007 B = 0.006253 C = 0.005721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.205614 B = 4477.072070 C = 4892.653697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 C 0.256 3.744 4 H 0.026 0.974 5 C -0.617 4.617 6 H 0.052 0.948 7 C -0.013 4.013 8 N -0.920 5.920 9 Si 1.118 2.882 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.283 1.283 13 N -0.697 5.697 14 C 0.377 3.623 15 N -0.511 5.511 16 C 0.074 3.926 17 C 0.008 3.992 18 O -0.325 6.325 19 C 0.017 3.983 20 C -0.054 4.054 21 C -0.149 4.149 22 Cl -0.057 7.057 23 H 0.039 0.961 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.044 0.956 28 H 0.262 0.738 29 H 0.395 0.605 30 H 0.183 0.817 31 H 0.124 0.876 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.118 -0.170 5.744 13.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.153 4.153 3 C 0.154 3.846 4 H 0.044 0.956 5 C -0.655 4.655 6 H 0.071 0.929 7 C -0.215 4.215 8 N -0.555 5.555 9 Si 0.940 3.060 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.209 1.209 13 N -0.328 5.328 14 C 0.139 3.861 15 N -0.230 5.230 16 C -0.086 4.086 17 C -0.042 4.042 18 O -0.239 6.239 19 C -0.077 4.077 20 C -0.081 4.081 21 C -0.184 4.184 22 Cl -0.029 7.029 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.232 0.768 30 H 0.199 0.801 31 H 0.142 0.858 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.525 0.306 4.535 11.464 hybrid contribution -1.176 -0.432 1.359 1.849 sum -11.701 -0.126 5.894 13.102 Atomic orbital electron populations 1.21670 0.95375 0.99632 1.01260 1.21755 0.95819 0.97621 1.00073 1.18648 0.93538 0.89572 0.82834 0.95618 1.22480 0.92726 1.03809 1.46507 0.92937 1.27264 1.10736 0.92100 0.91441 1.70818 1.08920 1.33534 1.42205 0.82928 0.69475 0.76413 0.77206 1.19380 1.20583 1.20946 1.46381 1.10600 1.57974 1.17851 1.18613 0.88435 0.90994 0.88075 1.67521 1.04046 1.22753 1.28722 1.23130 0.92940 0.95099 0.97445 1.19398 0.87855 1.01833 0.95134 1.86009 1.22511 1.74636 1.40714 1.23339 0.94567 1.03004 0.86788 1.20580 0.89803 0.98341 0.99382 1.21033 0.94626 1.11937 0.90842 1.98316 1.61355 1.97650 1.45563 0.94203 0.93219 0.93112 0.92848 0.93728 0.92704 0.76779 0.80073 0.85781 0.92245 0.91758 0.81928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.58 8.46 71.98 0.61 -3.97 16 2 C -0.11 -4.87 5.58 30.60 0.17 -4.70 16 3 C 0.26 12.64 1.95 44.25 0.09 12.72 16 4 H 0.03 1.44 6.09 -2.39 -0.01 1.43 16 5 C -0.62 -33.15 8.50 25.60 0.22 -32.93 16 6 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 7 C -0.01 -0.72 5.46 84.65 0.46 -0.25 16 8 N -0.92 -54.92 13.63 21.45 0.29 -54.63 16 9 Si 1.12 48.85 29.91 68.60 2.05 50.90 16 10 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 11 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 13 N -0.70 -31.69 5.13 -327.85 -1.68 -33.37 16 14 C 0.38 15.60 6.07 132.98 0.81 16.41 16 15 N -0.51 -20.24 6.41 -192.65 -1.24 -21.48 16 16 C 0.07 2.33 10.21 84.73 0.87 3.19 16 17 C 0.01 0.23 6.71 22.57 0.15 0.38 16 18 O -0.33 -8.07 10.51 -93.69 -0.98 -9.05 16 19 C 0.02 0.27 9.82 113.37 1.11 1.39 16 20 C -0.05 -1.68 9.92 22.55 0.22 -1.46 16 21 C -0.15 -5.36 6.36 22.54 0.14 -5.22 16 22 Cl -0.06 -1.89 27.61 -2.72 -0.08 -1.96 16 23 H 0.04 1.54 5.57 -2.39 -0.01 1.53 16 24 H 0.05 1.90 7.72 -2.39 -0.02 1.88 16 25 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.26 16.17 6.66 -92.71 -0.62 15.56 16 29 H 0.40 17.86 7.25 -92.71 -0.67 17.19 16 30 H 0.18 4.47 6.30 -2.91 -0.02 4.46 16 31 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 0.90 7.68 -2.39 -0.02 0.88 16 33 H 0.06 0.90 7.67 -2.38 -0.02 0.88 16 34 H 0.16 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -62.99 296.93 3.82 -59.16 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 0.61 Total: 24.86 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 4.85 Total: -14.43 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -2.62 Total: -109.48 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -0.98 Total: -9.05 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 2.05 Total: 50.90 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -0.08 Total: -1.96 kcal Total: -62.99 3.82 -59.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052830.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.872 kcal (2) G-P(sol) polarization free energy of solvation -62.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds