Wall clock time and date at job start Mon Mar 30 2020 01:02:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53004 * 109.46905 * 2 1
4 4 H 1.09000 * 109.46936 * 305.73440 * 3 2 1
5 5 C 1.50702 * 109.47156 * 185.73875 * 3 2 1
6 6 H 1.08007 * 119.99858 * 335.21235 * 5 3 2
7 7 C 1.37872 * 120.00319 * 155.21663 * 5 3 2
8 8 N 1.31523 * 119.99648 * 355.61998 * 7 5 3
9 9 Si 1.86797 * 120.00405 * 175.34956 * 7 5 3
10 10 H 1.48506 * 109.46900 * 359.97438 * 9 7 5
11 11 H 1.48498 * 109.47557 * 119.99676 * 9 7 5
12 12 H 1.48505 * 109.47160 * 240.00169 * 9 7 5
13 13 N 1.46498 * 109.46941 * 65.74070 * 3 2 1
14 14 C 1.39325 * 119.99379 * 274.99603 * 13 3 2
15 15 N 1.32326 * 119.65642 * 0.02562 * 14 13 3
16 16 C 1.31986 * 121.68824 * 179.97438 * 15 14 13
17 17 C 1.38496 * 120.80349 * 359.97390 * 16 15 14
18 18 O 1.36012 * 120.38663 * 179.97438 * 17 16 15
19 19 C 1.42905 * 117.00027 * 359.97438 * 18 17 16
20 20 C 1.39227 * 119.23069 * 0.02607 * 17 16 15
21 21 C 1.38424 * 118.44704 * 359.72643 * 20 17 16
22 22 Cl 1.73597 * 120.43324 * 180.26653 * 21 20 17
23 23 H 1.08994 * 109.47016 * 299.99378 * 1 2 3
24 24 H 1.08992 * 109.47222 * 60.00144 * 1 2 3
25 25 H 1.09005 * 109.46415 * 180.02562 * 1 2 3
26 26 H 1.09004 * 109.46869 * 240.00654 * 2 1 3
27 27 H 1.08999 * 109.47686 * 120.00603 * 2 1 3
28 28 H 0.96997 * 119.99869 * 5.00072 * 8 7 5
29 29 H 0.96996 * 120.00081 * 95.00077 * 13 3 2
30 30 H 1.08007 * 119.59851 * 179.97438 * 16 15 14
31 31 H 1.08999 * 109.47125 * 179.97438 * 19 18 17
32 32 H 1.08994 * 109.47400 * 300.00492 * 19 18 17
33 33 H 1.09004 * 109.46544 * 60.00415 * 19 18 17
34 34 H 1.07992 * 120.77834 * 179.97438 * 20 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.5952 1.9851 -0.8342
5 6 3.5403 1.4450 -0.1421
6 1 4.1136 0.5841 0.1689
7 6 4.1811 2.5462 -0.6689
8 7 3.4784 3.5592 -1.1270
9 14 6.0474 2.6027 -0.7253
10 1 6.5982 1.3510 -0.1463
11 1 6.4963 2.7361 -2.1345
12 1 6.5314 3.7660 0.0607
13 7 1.6677 2.0921 1.2592
14 6 0.4108 2.6775 1.3960
15 7 -0.4414 2.6424 0.3842
16 6 -1.6421 3.1837 0.4701
17 6 -2.0553 3.8122 1.6330
18 8 -3.2944 4.3675 1.7119
19 6 -4.1250 4.2679 0.5534
20 6 -1.1872 3.8699 2.7199
21 6 0.0626 3.2875 2.5973
22 17 1.1832 3.3233 3.9226
23 1 -0.3633 0.5137 0.8900
24 1 -0.3633 0.5138 -0.8899
25 1 -0.3632 -1.0278 0.0005
26 1 1.8933 -0.5138 -0.8901
27 1 1.8934 -0.5139 0.8899
28 1 2.5135 3.5641 -1.0285
29 1 2.2962 2.1146 1.9977
30 1 -2.3106 3.1358 -0.3769
31 1 -5.0827 4.7496 0.7505
32 1 -3.6365 4.7602 -0.2874
33 1 -4.2896 3.2174 0.3137
34 1 -1.4834 4.3542 3.6386
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001161052830.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:02:38
Heat of formation + Delta-G solvation = -28.289186 kcal
Electronic energy + Delta-G solvation = -18868.020676 eV
Core-core repulsion = 15826.395872 eV
Total energy + Delta-G solvation = -3041.624805 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 270.088 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-41.62146 -39.45503 -37.67649 -37.38925 -34.40955 -33.37164 -33.02846 -30.02340
-28.38283 -27.69892 -25.17330 -24.30218 -23.37897 -21.73747 -19.43283 -19.12165
-18.29770 -17.85754 -16.77856 -16.17682 -16.05123 -15.73055 -15.63718 -15.12940
-14.91658 -14.63056 -14.34977 -13.94706 -13.84309 -13.04606 -12.81627 -12.72222
-12.63450 -12.58462 -12.31445 -12.13206 -12.04777 -11.91983 -11.57957 -10.91504
-10.58362 -10.40348 -10.34587 -10.26938 -8.66698 -8.11295 -6.46878 0.03722
0.48421 1.05714 1.54497 1.60646 1.78623 2.39101 2.52572 2.60097
2.81020 3.27812 3.63412 3.74417 3.92951 4.25326 4.35856 4.41119
4.46357 4.50209 4.54530 4.68047 4.80473 4.84324 5.00268 5.14952
5.20669 5.27253 5.39564 5.57818 5.84917 6.16624 6.33223 6.51564
6.53167 6.74845 7.37469 7.41716 8.70456
Molecular weight = 270.09amu
Principal moments of inertia in cm(-1)
A = 0.020007 B = 0.006253 C = 0.005721
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1399.205614 B = 4477.072070 C = 4892.653697
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C -0.114 4.114
3 C 0.256 3.744
4 H 0.026 0.974
5 C -0.617 4.617
6 H 0.052 0.948
7 C -0.013 4.013
8 N -0.920 5.920
9 Si 1.118 2.882
10 H -0.269 1.269
11 H -0.280 1.280
12 H -0.283 1.283
13 N -0.697 5.697
14 C 0.377 3.623
15 N -0.511 5.511
16 C 0.074 3.926
17 C 0.008 3.992
18 O -0.325 6.325
19 C 0.017 3.983
20 C -0.054 4.054
21 C -0.149 4.149
22 Cl -0.057 7.057
23 H 0.039 0.961
24 H 0.049 0.951
25 H 0.050 0.950
26 H 0.053 0.947
27 H 0.044 0.956
28 H 0.262 0.738
29 H 0.395 0.605
30 H 0.183 0.817
31 H 0.124 0.876
32 H 0.059 0.941
33 H 0.064 0.936
34 H 0.163 0.837
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.118 -0.170 5.744 13.411
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C -0.153 4.153
3 C 0.154 3.846
4 H 0.044 0.956
5 C -0.655 4.655
6 H 0.071 0.929
7 C -0.215 4.215
8 N -0.555 5.555
9 Si 0.940 3.060
10 H -0.194 1.194
11 H -0.206 1.206
12 H -0.209 1.209
13 N -0.328 5.328
14 C 0.139 3.861
15 N -0.230 5.230
16 C -0.086 4.086
17 C -0.042 4.042
18 O -0.239 6.239
19 C -0.077 4.077
20 C -0.081 4.081
21 C -0.184 4.184
22 Cl -0.029 7.029
23 H 0.058 0.942
24 H 0.068 0.932
25 H 0.069 0.931
26 H 0.072 0.928
27 H 0.063 0.937
28 H 0.073 0.927
29 H 0.232 0.768
30 H 0.199 0.801
31 H 0.142 0.858
32 H 0.078 0.922
33 H 0.082 0.918
34 H 0.181 0.819
Dipole moment (debyes) X Y Z Total
from point charges -10.525 0.306 4.535 11.464
hybrid contribution -1.176 -0.432 1.359 1.849
sum -11.701 -0.126 5.894 13.102
Atomic orbital electron populations
1.21670 0.95375 0.99632 1.01260 1.21755 0.95819 0.97621 1.00073
1.18648 0.93538 0.89572 0.82834 0.95618 1.22480 0.92726 1.03809
1.46507 0.92937 1.27264 1.10736 0.92100 0.91441 1.70818 1.08920
1.33534 1.42205 0.82928 0.69475 0.76413 0.77206 1.19380 1.20583
1.20946 1.46381 1.10600 1.57974 1.17851 1.18613 0.88435 0.90994
0.88075 1.67521 1.04046 1.22753 1.28722 1.23130 0.92940 0.95099
0.97445 1.19398 0.87855 1.01833 0.95134 1.86009 1.22511 1.74636
1.40714 1.23339 0.94567 1.03004 0.86788 1.20580 0.89803 0.98341
0.99382 1.21033 0.94626 1.11937 0.90842 1.98316 1.61355 1.97650
1.45563 0.94203 0.93219 0.93112 0.92848 0.93728 0.92704 0.76779
0.80073 0.85781 0.92245 0.91758 0.81928
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.58 8.46 71.98 0.61 -3.97 16
2 C -0.11 -4.87 5.58 30.60 0.17 -4.70 16
3 C 0.26 12.64 1.95 44.25 0.09 12.72 16
4 H 0.03 1.44 6.09 -2.39 -0.01 1.43 16
5 C -0.62 -33.15 8.50 25.60 0.22 -32.93 16
6 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16
7 C -0.01 -0.72 5.46 84.65 0.46 -0.25 16
8 N -0.92 -54.92 13.63 21.45 0.29 -54.63 16
9 Si 1.12 48.85 29.91 68.60 2.05 50.90 16
10 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16
11 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16
12 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16
13 N -0.70 -31.69 5.13 -327.85 -1.68 -33.37 16
14 C 0.38 15.60 6.07 132.98 0.81 16.41 16
15 N -0.51 -20.24 6.41 -192.65 -1.24 -21.48 16
16 C 0.07 2.33 10.21 84.73 0.87 3.19 16
17 C 0.01 0.23 6.71 22.57 0.15 0.38 16
18 O -0.33 -8.07 10.51 -93.69 -0.98 -9.05 16
19 C 0.02 0.27 9.82 113.37 1.11 1.39 16
20 C -0.05 -1.68 9.92 22.55 0.22 -1.46 16
21 C -0.15 -5.36 6.36 22.54 0.14 -5.22 16
22 Cl -0.06 -1.89 27.61 -2.72 -0.08 -1.96 16
23 H 0.04 1.54 5.57 -2.39 -0.01 1.53 16
24 H 0.05 1.90 7.72 -2.39 -0.02 1.88 16
25 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16
26 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16
27 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16
28 H 0.26 16.17 6.66 -92.71 -0.62 15.56 16
29 H 0.40 17.86 7.25 -92.71 -0.67 17.19 16
30 H 0.18 4.47 6.30 -2.91 -0.02 4.46 16
31 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16
32 H 0.06 0.90 7.68 -2.39 -0.02 0.88 16
33 H 0.06 0.90 7.67 -2.38 -0.02 0.88 16
34 H 0.16 4.20 8.06 -2.91 -0.02 4.18 16
Total: -1.00 -62.99 296.93 3.82 -59.16
By element:
Atomic # 1 Polarization: 24.25 SS G_CDS: 0.61 Total: 24.86 kcal
Atomic # 6 Polarization: -19.28 SS G_CDS: 4.85 Total: -14.43 kcal
Atomic # 7 Polarization: -106.86 SS G_CDS: -2.62 Total: -109.48 kcal
Atomic # 8 Polarization: -8.07 SS G_CDS: -0.98 Total: -9.05 kcal
Atomic # 14 Polarization: 48.85 SS G_CDS: 2.05 Total: 50.90 kcal
Atomic # 17 Polarization: -1.89 SS G_CDS: -0.08 Total: -1.96 kcal
Total: -62.99 3.82 -59.16 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001161052830.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.872 kcal
(2) G-P(sol) polarization free energy of solvation -62.985 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.113 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.162 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.289 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds