Wall clock time and date at job start Mon Mar 30 2020 01:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47113 * 2 1 4 4 H 1.09001 * 109.46864 * 306.53290 * 3 2 1 5 5 C 1.50702 * 109.46864 * 186.53651 * 3 2 1 6 6 H 1.08005 * 119.99906 * 239.99788 * 5 3 2 7 7 C 1.37876 * 120.00028 * 59.99666 * 5 3 2 8 8 N 1.31509 * 120.00205 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99763 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47382 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46881 * 120.00330 * 9 7 5 12 12 H 1.48497 * 109.47331 * 239.99885 * 9 7 5 13 13 N 1.46897 * 109.47359 * 66.53789 * 3 2 1 14 14 C 1.40090 * 110.99719 * 201.19798 * 13 3 2 15 15 C 1.38735 * 120.51836 * 78.20811 * 14 13 3 16 16 Cl 1.73596 * 119.65362 * 359.97438 * 15 14 13 17 17 N 1.32028 * 120.69290 * 179.97438 * 15 14 13 18 18 C 1.31957 * 121.88808 * 359.97438 * 17 15 14 19 19 C 1.38050 * 120.97486 * 359.97438 * 18 17 15 20 20 C 1.39107 * 119.19128 * 359.75490 * 19 18 17 21 21 O 1.35858 * 120.85889 * 180.27581 * 20 19 18 22 22 C 1.42908 * 116.99895 * 0.21835 * 21 20 19 23 23 H 1.09004 * 109.47192 * 295.37329 * 1 2 3 24 24 H 1.08997 * 109.47208 * 55.37017 * 1 2 3 25 25 H 1.08997 * 109.47320 * 175.37590 * 1 2 3 26 26 H 1.08999 * 109.46776 * 120.00127 * 2 1 3 27 27 H 1.08998 * 109.46790 * 239.99693 * 2 1 3 28 28 H 0.96998 * 120.00211 * 179.97438 * 8 7 5 29 29 H 1.00902 * 110.99552 * 325.14370 * 13 3 2 30 30 H 1.08004 * 119.51624 * 180.02562 * 18 17 15 31 31 H 1.07997 * 120.40669 * 179.97438 * 19 18 17 32 32 H 1.09001 * 109.46992 * 180.02562 * 22 21 20 33 33 H 1.09002 * 109.46789 * 299.99855 * 22 21 20 34 34 H 1.08995 * 109.47109 * 59.99643 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5843 1.9889 -0.8258 5 6 3.5383 1.4455 -0.1617 6 1 4.1631 1.8832 0.6028 7 6 4.1115 0.8895 -1.2857 8 7 3.3507 0.3569 -2.2169 9 14 5.9687 0.8939 -1.4864 10 1 6.5924 1.5484 -0.3084 11 1 6.4584 -0.5041 -1.5925 12 1 6.3317 1.6402 -2.7178 13 7 1.6834 2.0880 1.2704 14 6 1.6883 3.4831 1.1434 15 6 0.6254 4.1393 0.5398 16 17 -0.7199 3.2222 -0.0625 17 7 0.6262 5.4540 0.4187 18 6 1.6251 6.1942 0.8610 19 6 2.7192 5.6177 1.4744 20 6 2.7602 4.2359 1.6296 21 8 3.8178 3.6335 2.2331 22 6 4.8692 4.4823 2.6982 23 1 -0.3634 0.4404 0.9286 24 1 -0.3633 0.5840 -0.8456 25 1 -0.3634 -1.0243 -0.0828 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.7539 -0.0339 -3.0078 29 1 0.7903 1.7586 1.6051 30 1 1.5857 7.2669 0.7422 31 1 3.5319 6.2322 1.8326 32 1 5.6494 3.8756 3.1581 33 1 5.2879 5.0358 1.8578 34 1 4.4725 5.1827 3.4331 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161055085.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:41 Heat of formation + Delta-G solvation = -4.743292 kcal Electronic energy + Delta-G solvation = -19308.984199 eV Core-core repulsion = 16268.380421 eV Total energy + Delta-G solvation = -3040.603778 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.35515 -37.92178 -36.52734 -35.99359 -32.86673 -31.40457 -30.82922 -28.59889 -27.23139 -26.28127 -23.20105 -22.55933 -21.96531 -19.64299 -18.12604 -17.20754 -16.21999 -15.82764 -15.58674 -15.10522 -14.71371 -14.25322 -14.09275 -13.80140 -13.53049 -12.70581 -12.67224 -12.25081 -11.81573 -11.58806 -11.27233 -11.06328 -11.04882 -10.94981 -10.88020 -10.62128 -10.01892 -9.84875 -9.77446 -9.61493 -9.02700 -8.66049 -8.35276 -8.20433 -7.42584 -5.95402 -3.98149 1.23792 1.66266 2.15808 3.30485 3.38368 3.42440 3.56196 3.96577 4.44040 4.71082 4.92490 5.05279 5.23690 5.28623 5.33862 5.35492 5.59652 5.69441 5.91789 6.17747 6.20364 6.23351 6.44908 6.60529 6.88481 7.09520 7.12486 7.38609 7.59906 7.76833 7.92553 8.06221 8.26311 8.33480 8.63503 9.11941 9.65518 11.10710 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.014527 B = 0.009994 C = 0.006938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.972856 B = 2800.997244 C = 4034.556835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.224 3.776 4 H 0.013 0.987 5 C -0.493 4.493 6 H 0.072 0.928 7 C 0.055 3.945 8 N -0.895 5.895 9 Si 0.892 3.108 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.287 1.287 13 N -0.633 5.633 14 C 0.078 3.922 15 C 0.156 3.844 16 Cl -0.028 7.028 17 N -0.501 5.501 18 C 0.129 3.871 19 C -0.262 4.262 20 C 0.198 3.802 21 O -0.269 6.269 22 C 0.022 3.978 23 H 0.035 0.965 24 H 0.045 0.955 25 H 0.037 0.963 26 H 0.042 0.958 27 H 0.103 0.897 28 H 0.258 0.742 29 H 0.335 0.665 30 H 0.160 0.840 31 H 0.140 0.860 32 H 0.100 0.900 33 H 0.054 0.946 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.924 8.461 7.767 11.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C 0.120 3.880 4 H 0.031 0.969 5 C -0.532 4.532 6 H 0.090 0.910 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.214 1.214 13 N -0.264 5.264 14 C -0.024 4.024 15 C -0.008 4.008 16 Cl 0.001 6.999 17 N -0.216 5.216 18 C -0.029 4.029 19 C -0.284 4.284 20 C 0.142 3.858 21 O -0.178 6.178 22 C -0.073 4.073 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.121 0.879 28 H 0.068 0.932 29 H 0.157 0.843 30 H 0.177 0.823 31 H 0.158 0.842 32 H 0.118 0.882 33 H 0.073 0.927 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.021 8.345 7.441 11.362 hybrid contribution 0.932 -0.079 -0.410 1.021 sum -1.089 8.266 7.031 10.906 Atomic orbital electron populations 1.21918 0.99431 0.99671 0.99747 1.21745 0.91421 0.99673 1.03287 1.19358 0.96146 0.90147 0.82363 0.96886 1.21348 0.91137 1.36580 1.04162 0.91008 1.24929 0.97881 0.95769 0.95918 1.69878 1.34391 1.39869 1.09395 0.86528 0.86048 0.77610 0.77747 1.19819 1.21110 1.21367 1.58303 1.35101 0.98903 1.34131 1.18707 0.91839 0.92653 0.99187 1.22395 0.91052 0.90097 0.97297 1.98385 1.44564 1.70717 1.86252 1.66871 1.28953 1.05334 1.20465 1.22169 0.87915 0.99323 0.93483 1.22181 1.02909 0.94016 1.09280 1.19041 0.87267 0.89653 0.89826 1.86382 1.26982 1.34214 1.70235 1.23122 0.89638 0.95784 0.98803 0.94644 0.93623 0.94373 0.93871 0.87894 0.93157 0.84315 0.82308 0.84195 0.88162 0.92714 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.02 37.16 0.34 -2.60 16 2 C -0.12 -2.88 5.38 -26.73 -0.14 -3.03 16 3 C 0.22 5.56 1.61 -68.87 -0.11 5.44 16 4 H 0.01 0.37 6.89 -51.93 -0.36 0.01 16 5 C -0.49 -13.51 8.58 -34.44 -0.30 -13.81 16 6 H 0.07 2.00 6.52 -52.48 -0.34 1.66 16 7 C 0.06 1.53 5.28 -17.82 -0.09 1.43 16 8 N -0.90 -25.47 11.29 55.43 0.63 -24.85 16 9 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 N -0.63 -13.81 5.84 -52.75 -0.31 -14.12 16 14 C 0.08 1.60 5.07 -83.35 -0.42 1.18 16 15 C 0.16 3.07 7.02 -17.28 -0.12 2.95 16 16 Cl -0.03 -0.51 25.68 -51.86 -1.33 -1.84 16 17 N -0.50 -9.11 10.34 -10.28 -0.11 -9.22 16 18 C 0.13 1.93 11.17 -17.57 -0.20 1.73 16 19 C -0.26 -3.91 9.11 -39.33 -0.36 -4.27 16 20 C 0.20 3.70 6.75 -38.71 -0.26 3.44 16 21 O -0.27 -4.98 9.05 -19.29 -0.17 -5.16 16 22 C 0.02 0.28 9.84 101.05 0.99 1.27 16 23 H 0.03 0.63 6.65 -51.93 -0.35 0.28 16 24 H 0.04 0.91 7.48 -51.93 -0.39 0.52 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.10 2.72 5.92 -51.93 -0.31 2.41 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.33 6.73 5.94 -39.29 -0.23 6.49 16 30 H 0.16 1.71 8.06 -52.48 -0.42 1.29 16 31 H 0.14 1.57 6.46 -52.49 -0.34 1.23 16 32 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.64 7.70 -51.93 -0.40 0.24 16 34 H 0.05 0.51 7.72 -51.93 -0.40 0.11 16 LS Contribution 293.98 15.07 4.43 4.43 Total: -1.00 -30.59 293.98 -6.50 -37.09 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -3.94 Total: 3.44 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -0.67 Total: -6.26 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.21 Total: -48.18 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.17 Total: -5.16 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.33 Total: -1.84 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.59 -6.50 -37.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055085.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.343 kcal (2) G-P(sol) polarization free energy of solvation -30.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds