Wall clock time and date at job start Mon Mar 30 2020 01:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47113 * 2 1 4 4 H 1.09001 * 109.46864 * 306.53290 * 3 2 1 5 5 C 1.50702 * 109.46864 * 186.53651 * 3 2 1 6 6 H 1.08005 * 119.99906 * 239.99788 * 5 3 2 7 7 C 1.37876 * 120.00028 * 59.99666 * 5 3 2 8 8 N 1.31509 * 120.00205 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99763 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47382 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46881 * 120.00330 * 9 7 5 12 12 H 1.48497 * 109.47331 * 239.99885 * 9 7 5 13 13 N 1.46897 * 109.47359 * 66.53789 * 3 2 1 14 14 C 1.40090 * 110.99719 * 201.19798 * 13 3 2 15 15 C 1.38735 * 120.51836 * 78.20811 * 14 13 3 16 16 Cl 1.73596 * 119.65362 * 359.97438 * 15 14 13 17 17 N 1.32028 * 120.69290 * 179.97438 * 15 14 13 18 18 C 1.31957 * 121.88808 * 359.97438 * 17 15 14 19 19 C 1.38050 * 120.97486 * 359.97438 * 18 17 15 20 20 C 1.39107 * 119.19128 * 359.75490 * 19 18 17 21 21 O 1.35858 * 120.85889 * 180.27581 * 20 19 18 22 22 C 1.42908 * 116.99895 * 0.21835 * 21 20 19 23 23 H 1.09004 * 109.47192 * 295.37329 * 1 2 3 24 24 H 1.08997 * 109.47208 * 55.37017 * 1 2 3 25 25 H 1.08997 * 109.47320 * 175.37590 * 1 2 3 26 26 H 1.08999 * 109.46776 * 120.00127 * 2 1 3 27 27 H 1.08998 * 109.46790 * 239.99693 * 2 1 3 28 28 H 0.96998 * 120.00211 * 179.97438 * 8 7 5 29 29 H 1.00902 * 110.99552 * 325.14370 * 13 3 2 30 30 H 1.08004 * 119.51624 * 180.02562 * 18 17 15 31 31 H 1.07997 * 120.40669 * 179.97438 * 19 18 17 32 32 H 1.09001 * 109.46992 * 180.02562 * 22 21 20 33 33 H 1.09002 * 109.46789 * 299.99855 * 22 21 20 34 34 H 1.08995 * 109.47109 * 59.99643 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5843 1.9889 -0.8258 5 6 3.5383 1.4455 -0.1617 6 1 4.1631 1.8832 0.6028 7 6 4.1115 0.8895 -1.2857 8 7 3.3507 0.3569 -2.2169 9 14 5.9687 0.8939 -1.4864 10 1 6.5924 1.5484 -0.3084 11 1 6.4584 -0.5041 -1.5925 12 1 6.3317 1.6402 -2.7178 13 7 1.6834 2.0880 1.2704 14 6 1.6883 3.4831 1.1434 15 6 0.6254 4.1393 0.5398 16 17 -0.7199 3.2222 -0.0625 17 7 0.6262 5.4540 0.4187 18 6 1.6251 6.1942 0.8610 19 6 2.7192 5.6177 1.4744 20 6 2.7602 4.2359 1.6296 21 8 3.8178 3.6335 2.2331 22 6 4.8692 4.4823 2.6982 23 1 -0.3634 0.4404 0.9286 24 1 -0.3633 0.5840 -0.8456 25 1 -0.3634 -1.0243 -0.0828 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.7539 -0.0339 -3.0078 29 1 0.7903 1.7586 1.6051 30 1 1.5857 7.2669 0.7422 31 1 3.5319 6.2322 1.8326 32 1 5.6494 3.8756 3.1581 33 1 5.2879 5.0358 1.8578 34 1 4.4725 5.1827 3.4331 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161055085.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:40 Heat of formation + Delta-G solvation = -25.395682 kcal Electronic energy + Delta-G solvation = -19309.879754 eV Core-core repulsion = 16268.380421 eV Total energy + Delta-G solvation = -3041.499333 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.68198 -39.22012 -38.14901 -37.48139 -34.69774 -33.21276 -32.11484 -30.08850 -28.51837 -27.98613 -24.97364 -23.86762 -23.44288 -21.51511 -19.38468 -18.76285 -17.89756 -17.50277 -17.00435 -16.45450 -16.39371 -15.69764 -15.45015 -15.16244 -15.02904 -14.56431 -14.17488 -13.71023 -13.33818 -13.12067 -12.83214 -12.81805 -12.53331 -12.47265 -12.25252 -12.22086 -11.98845 -11.60242 -11.48981 -11.28695 -10.78150 -10.41221 -9.93214 -9.69415 -9.10084 -8.03761 -6.13067 -0.09341 0.32698 0.77018 1.38871 1.41115 1.52361 2.37701 2.44878 2.65319 3.22326 3.32388 3.74186 3.83538 3.99972 4.28116 4.37257 4.43940 4.50440 4.57413 4.61473 4.71896 4.77168 4.97990 5.11710 5.27375 5.34931 5.38931 5.60906 5.79682 5.88186 6.23742 6.36538 6.57046 6.78084 6.84152 7.02193 7.53816 9.00814 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.014527 B = 0.009994 C = 0.006938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.972856 B = 2800.997244 C = 4034.556835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.118 4.118 3 C 0.235 3.765 4 H -0.019 1.019 5 C -0.505 4.505 6 H 0.064 0.936 7 C 0.008 3.992 8 N -0.921 5.921 9 Si 0.950 3.050 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.286 1.286 13 N -0.631 5.631 14 C 0.037 3.963 15 C 0.144 3.856 16 Cl -0.032 7.032 17 N -0.519 5.519 18 C 0.136 3.864 19 C -0.248 4.248 20 C 0.184 3.816 21 O -0.303 6.303 22 C 0.011 3.989 23 H 0.052 0.948 24 H 0.036 0.964 25 H 0.057 0.943 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.258 0.742 29 H 0.339 0.661 30 H 0.208 0.792 31 H 0.184 0.816 32 H 0.111 0.889 33 H 0.064 0.936 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.990 10.348 8.779 13.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.157 4.157 3 C 0.129 3.871 4 H -0.001 1.001 5 C -0.543 4.543 6 H 0.082 0.918 7 C -0.190 4.190 8 N -0.562 5.562 9 Si 0.777 3.223 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.212 1.212 13 N -0.262 5.262 14 C -0.065 4.065 15 C -0.020 4.020 16 Cl -0.003 7.003 17 N -0.235 5.235 18 C -0.021 4.021 19 C -0.269 4.269 20 C 0.128 3.872 21 O -0.213 6.213 22 C -0.083 4.083 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.161 0.839 30 H 0.224 0.776 31 H 0.201 0.799 32 H 0.129 0.871 33 H 0.083 0.917 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.086 10.252 8.477 13.346 hybrid contribution 0.682 -0.538 -0.663 1.093 sum -0.404 9.713 7.813 12.473 Atomic orbital electron populations 1.21771 0.96494 1.00973 1.00293 1.21577 0.94069 0.98629 1.01439 1.19039 0.94664 0.90482 0.82873 1.00135 1.21603 0.92605 1.36183 1.03943 0.91826 1.25645 1.01882 0.95661 0.95778 1.70015 1.35886 1.40577 1.09734 0.85615 0.81338 0.77633 0.77731 1.19005 1.20781 1.21222 1.58148 1.35444 1.00223 1.32415 1.18951 0.93637 0.92006 1.01887 1.22426 0.91010 0.90856 0.97695 1.98368 1.44590 1.71048 1.86307 1.66959 1.30496 1.04660 1.21415 1.23051 0.86643 1.01178 0.91237 1.22614 1.03863 0.92697 1.07728 1.19323 0.86913 0.91046 0.89934 1.86318 1.27903 1.36722 1.70370 1.23474 0.88683 0.96248 0.99901 0.92883 0.94485 0.92393 0.94275 0.90976 0.93293 0.83911 0.77583 0.79931 0.87088 0.91747 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.41 9.02 71.98 0.65 -4.76 16 2 C -0.12 -5.70 5.38 30.59 0.16 -5.54 16 3 C 0.23 11.94 1.61 44.17 0.07 12.01 16 4 H -0.02 -1.07 6.89 -2.39 -0.02 -1.09 16 5 C -0.50 -28.11 8.58 25.60 0.22 -27.89 16 6 H 0.06 3.58 6.52 -2.91 -0.02 3.56 16 7 C 0.01 0.44 5.28 84.66 0.45 0.89 16 8 N -0.92 -53.63 11.29 21.45 0.24 -53.38 16 9 Si 0.95 44.35 29.54 68.60 2.03 46.38 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 13 N -0.63 -27.98 5.84 -320.80 -1.87 -29.85 16 14 C 0.04 1.51 5.07 38.30 0.19 1.70 16 15 C 0.14 5.64 7.02 84.78 0.60 6.24 16 16 Cl -0.03 -1.18 25.68 -2.72 -0.07 -1.25 16 17 N -0.52 -18.09 10.34 -186.43 -1.93 -20.01 16 18 C 0.14 3.60 11.17 84.63 0.95 4.55 16 19 C -0.25 -6.57 9.11 22.43 0.20 -6.36 16 20 C 0.18 6.62 6.75 22.84 0.15 6.77 16 21 O -0.30 -10.86 9.05 -91.95 -0.83 -11.69 16 22 C 0.01 0.25 9.84 113.37 1.12 1.36 16 23 H 0.05 1.87 6.65 -2.39 -0.02 1.85 16 24 H 0.04 1.50 7.48 -2.39 -0.02 1.48 16 25 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.04 1.85 8.14 -2.39 -0.02 1.84 16 27 H 0.07 3.93 5.92 -2.39 -0.01 3.92 16 28 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 29 H 0.34 13.85 5.94 -89.69 -0.53 13.31 16 30 H 0.21 3.36 8.06 -2.91 -0.02 3.33 16 31 H 0.18 3.13 6.46 -2.91 -0.02 3.12 16 32 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.06 1.30 7.70 -2.39 -0.02 1.28 16 34 H 0.08 1.31 7.72 -2.39 -0.02 1.29 16 Total: -1.00 -68.06 293.98 2.92 -65.14 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.60 Total: 15.70 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 4.76 Total: -11.03 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -3.56 Total: -103.25 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -0.83 Total: -11.69 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.07 Total: -1.25 kcal Total: -68.06 2.92 -65.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055085.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.743 kcal (2) G-P(sol) polarization free energy of solvation -68.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds