Wall clock time and date at job start Mon Mar 30 2020 01:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.47040 * 2 1 4 4 C 1.46897 * 111.00296 * 58.12584 * 3 2 1 5 5 C 1.50707 * 109.46720 * 66.04726 * 4 3 2 6 6 H 1.08001 * 120.00281 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99838 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00110 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00147 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47087 * 90.00166 * 9 7 5 11 11 H 1.48502 * 109.47503 * 210.00113 * 9 7 5 12 12 H 1.48501 * 109.46941 * 330.00463 * 9 7 5 13 13 C 1.39325 * 110.99620 * 294.17713 * 3 2 1 14 14 N 1.32330 * 119.65521 * 70.99047 * 13 3 2 15 15 C 1.31983 * 121.68684 * 179.71069 * 14 13 3 16 16 C 1.38504 * 120.80319 * 0.56120 * 15 14 13 17 17 O 1.36014 * 120.38232 * 179.74997 * 16 15 14 18 18 C 1.42898 * 117.00444 * 359.97438 * 17 16 15 19 19 C 1.39224 * 119.22674 * 359.72298 * 16 15 14 20 20 C 1.38411 * 118.45191 * 0.02562 * 19 16 15 21 21 Cl 1.73603 * 120.43341 * 179.97438 * 20 19 16 22 22 H 1.09004 * 109.47507 * 302.62472 * 1 2 3 23 23 H 1.09006 * 109.47095 * 62.62229 * 1 2 3 24 24 H 1.08992 * 109.47410 * 182.62057 * 1 2 3 25 25 H 1.08988 * 109.47360 * 239.99911 * 2 1 3 26 26 H 1.09004 * 109.46904 * 119.99474 * 2 1 3 27 27 H 1.09006 * 109.47565 * 306.05189 * 4 3 2 28 28 H 1.09003 * 109.47264 * 186.04641 * 4 3 2 29 29 H 0.97006 * 120.00008 * 179.97438 * 8 7 5 30 30 H 1.08001 * 119.59729 * 180.28845 * 15 14 13 31 31 H 1.08998 * 109.47347 * 180.02562 * 18 17 16 32 32 H 1.09005 * 109.47113 * 300.00038 * 18 17 16 33 33 H 1.09000 * 109.46995 * 59.99757 * 18 17 16 34 34 H 1.08002 * 120.76675 * 180.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5124 2.1228 1.1646 5 6 2.0962 1.5361 2.4241 6 1 2.7763 0.6993 2.3652 7 6 1.7628 2.0685 3.6514 8 7 0.9350 3.0879 3.7231 9 14 2.4870 1.3418 5.2125 10 1 3.7603 2.0339 5.5363 11 1 1.5282 1.5199 6.3325 12 1 2.7481 -0.1059 5.0098 13 6 1.6838 2.0333 -1.1866 14 7 0.4224 2.3571 -1.4214 15 6 0.0603 2.9766 -2.5292 16 6 0.9952 3.3018 -3.4980 17 8 0.6119 3.9357 -4.6387 18 6 -0.7777 4.2390 -4.7768 19 6 2.3320 2.9726 -3.2903 20 6 2.6775 2.3280 -2.1152 21 17 4.3291 1.8931 -1.8036 22 1 -0.3634 0.5541 0.8655 23 1 -0.3633 0.4726 -0.9126 24 1 -0.3634 -1.0265 0.0470 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 0.4255 2.0463 1.1981 28 1 1.8006 3.1710 1.0844 29 1 0.7002 3.4622 4.5867 30 1 -0.9782 3.2292 -2.6841 31 1 -0.9469 4.7421 -5.7288 32 1 -1.3559 3.3155 -4.7465 33 1 -1.0902 4.8903 -3.9605 34 1 3.0818 3.2148 -4.0290 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591136.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:05 Heat of formation + Delta-G solvation = 11.211300 kcal Electronic energy + Delta-G solvation = -18741.566476 eV Core-core repulsion = 15701.654541 eV Total energy + Delta-G solvation = -3039.911935 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.66763 -38.66367 -36.36776 -36.03813 -32.56663 -32.05145 -30.25167 -28.74503 -27.57378 -26.34275 -23.53207 -22.98977 -22.44480 -20.08928 -18.20869 -17.23267 -16.38613 -15.99971 -15.88443 -15.06359 -14.90314 -14.43180 -14.15471 -13.82455 -13.28896 -12.90864 -12.71737 -12.32490 -12.11349 -11.88629 -11.76833 -11.33766 -11.14215 -11.06358 -10.75322 -10.66455 -10.58328 -10.09159 -9.95360 -9.39792 -9.21891 -9.02508 -8.43922 -8.10072 -7.51241 -5.99708 -4.00883 1.12713 1.34231 2.30921 3.23573 3.34829 3.40632 3.44001 3.81419 4.32069 4.52996 4.63842 4.80713 4.90971 4.99573 5.21028 5.27673 5.36253 5.43772 5.65599 5.89585 5.94736 6.07720 6.20312 6.30852 6.52627 6.75364 7.05666 7.11013 7.30012 7.51668 7.80983 8.01533 8.10842 8.17856 8.54765 9.05390 9.62197 11.11153 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.022627 B = 0.005713 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.151730 B = 4900.027578 C = 5392.320166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.070 3.930 3 N -0.481 5.481 4 C 0.198 3.802 5 C -0.506 4.506 6 H 0.064 0.936 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.273 1.273 13 C 0.295 3.705 14 N -0.450 5.450 15 C 0.029 3.971 16 C 0.066 3.934 17 O -0.314 6.314 18 C 0.025 3.975 19 C -0.103 4.103 20 C -0.030 4.030 21 Cl -0.033 7.033 22 H 0.074 0.926 23 H 0.059 0.941 24 H 0.041 0.959 25 H 0.050 0.950 26 H 0.089 0.911 27 H 0.020 0.980 28 H 0.025 0.975 29 H 0.261 0.739 30 H 0.157 0.843 31 H 0.101 0.899 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.413 -0.411 -16.042 16.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.057 4.057 3 N -0.204 5.204 4 C 0.074 3.926 5 C -0.545 4.545 6 H 0.083 0.917 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.198 1.198 13 C 0.065 3.935 14 N -0.163 5.163 15 C -0.131 4.131 16 C 0.018 3.982 17 O -0.226 6.226 18 C -0.070 4.070 19 C -0.130 4.130 20 C -0.061 4.061 21 Cl -0.004 7.004 22 H 0.093 0.907 23 H 0.078 0.922 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.108 0.892 27 H 0.038 0.962 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.174 0.826 31 H 0.119 0.881 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.349 -0.496 -15.374 15.441 hybrid contribution -0.060 0.057 0.362 0.371 sum -1.409 -0.439 -15.012 15.084 Atomic orbital electron populations 1.22483 0.97805 1.00474 1.03622 1.21940 0.93439 0.88717 1.01603 1.60725 1.57423 1.02572 0.99665 1.19837 0.95152 0.92947 0.84636 1.21110 1.27140 1.16352 0.89874 0.91735 1.24948 0.95265 0.95106 0.99095 1.69975 1.34651 1.24015 1.25012 0.86505 0.78786 0.79522 0.82636 1.20679 1.21385 1.19804 1.20143 0.85779 0.94838 0.92740 1.68213 1.19187 1.09707 1.19193 1.22863 0.99731 0.99946 0.90559 1.19772 0.93773 0.96754 0.87868 1.86051 1.27176 1.73156 1.36224 1.23089 0.79790 1.00838 1.03244 1.20610 0.94396 1.00664 0.97376 1.21491 0.87966 1.01633 0.95045 1.98365 1.15157 1.91284 1.95627 0.90750 0.92214 0.93952 0.93149 0.89232 0.96215 0.95732 0.92960 0.82624 0.88110 0.92486 0.92325 0.83365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.55 8.99 37.16 0.33 -3.22 16 2 C 0.07 1.39 5.81 -3.82 -0.02 1.37 16 3 N -0.48 -10.64 4.09 -174.46 -0.71 -11.35 16 4 C 0.20 5.21 4.09 -4.97 -0.02 5.19 16 5 C -0.51 -14.11 8.54 -34.44 -0.29 -14.41 16 6 H 0.06 1.77 7.10 -52.49 -0.37 1.40 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 9 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 C 0.30 5.90 5.21 -154.75 -0.81 5.09 16 14 N -0.45 -8.60 7.16 -12.24 -0.09 -8.69 16 15 C 0.03 0.44 10.21 -17.39 -0.18 0.26 16 16 C 0.07 0.94 6.71 -39.12 -0.26 0.67 16 17 O -0.31 -3.79 10.51 -19.78 -0.21 -4.00 16 18 C 0.03 0.20 9.82 101.05 0.99 1.20 16 19 C -0.10 -1.53 9.92 -39.15 -0.39 -1.91 16 20 C -0.03 -0.53 6.36 -39.17 -0.25 -0.78 16 21 Cl -0.03 -0.55 28.47 -51.86 -1.48 -2.03 16 22 H 0.07 1.65 6.10 -51.93 -0.32 1.33 16 23 H 0.06 1.12 5.92 -51.93 -0.31 0.82 16 24 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.90 8.11 -51.94 -0.42 0.48 16 26 H 0.09 1.86 6.91 -51.93 -0.36 1.50 16 27 H 0.02 0.56 5.78 -51.93 -0.30 0.26 16 28 H 0.02 0.72 8.06 -51.93 -0.42 0.30 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.16 1.90 6.30 -52.49 -0.33 1.57 16 31 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.40 7.68 -51.93 -0.40 0.01 16 33 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 34 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 297.77 15.07 4.49 4.49 Total: -1.00 -30.99 297.77 -7.30 -38.29 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -4.03 Total: -2.32 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -0.99 Total: -5.02 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.07 Total: -46.06 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: -0.21 Total: -4.00 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.48 Total: -2.03 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.99 -7.30 -38.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591136.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.501 kcal (2) G-P(sol) polarization free energy of solvation -30.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds