Wall clock time and date at job start Mon Mar 30 2020 01:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.47040 * 2 1 4 4 C 1.46897 * 111.00296 * 58.12584 * 3 2 1 5 5 C 1.50707 * 109.46720 * 66.04726 * 4 3 2 6 6 H 1.08001 * 120.00281 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99838 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00110 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00147 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47087 * 90.00166 * 9 7 5 11 11 H 1.48502 * 109.47503 * 210.00113 * 9 7 5 12 12 H 1.48501 * 109.46941 * 330.00463 * 9 7 5 13 13 C 1.39325 * 110.99620 * 294.17713 * 3 2 1 14 14 N 1.32330 * 119.65521 * 70.99047 * 13 3 2 15 15 C 1.31983 * 121.68684 * 179.71069 * 14 13 3 16 16 C 1.38504 * 120.80319 * 0.56120 * 15 14 13 17 17 O 1.36014 * 120.38232 * 179.74997 * 16 15 14 18 18 C 1.42898 * 117.00444 * 359.97438 * 17 16 15 19 19 C 1.39224 * 119.22674 * 359.72298 * 16 15 14 20 20 C 1.38411 * 118.45191 * 0.02562 * 19 16 15 21 21 Cl 1.73603 * 120.43341 * 179.97438 * 20 19 16 22 22 H 1.09004 * 109.47507 * 302.62472 * 1 2 3 23 23 H 1.09006 * 109.47095 * 62.62229 * 1 2 3 24 24 H 1.08992 * 109.47410 * 182.62057 * 1 2 3 25 25 H 1.08988 * 109.47360 * 239.99911 * 2 1 3 26 26 H 1.09004 * 109.46904 * 119.99474 * 2 1 3 27 27 H 1.09006 * 109.47565 * 306.05189 * 4 3 2 28 28 H 1.09003 * 109.47264 * 186.04641 * 4 3 2 29 29 H 0.97006 * 120.00008 * 179.97438 * 8 7 5 30 30 H 1.08001 * 119.59729 * 180.28845 * 15 14 13 31 31 H 1.08998 * 109.47347 * 180.02562 * 18 17 16 32 32 H 1.09005 * 109.47113 * 300.00038 * 18 17 16 33 33 H 1.09000 * 109.46995 * 59.99757 * 18 17 16 34 34 H 1.08002 * 120.76675 * 180.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5124 2.1228 1.1646 5 6 2.0962 1.5361 2.4241 6 1 2.7763 0.6993 2.3652 7 6 1.7628 2.0685 3.6514 8 7 0.9350 3.0879 3.7231 9 14 2.4870 1.3418 5.2125 10 1 3.7603 2.0339 5.5363 11 1 1.5282 1.5199 6.3325 12 1 2.7481 -0.1059 5.0098 13 6 1.6838 2.0333 -1.1866 14 7 0.4224 2.3571 -1.4214 15 6 0.0603 2.9766 -2.5292 16 6 0.9952 3.3018 -3.4980 17 8 0.6119 3.9357 -4.6387 18 6 -0.7777 4.2390 -4.7768 19 6 2.3320 2.9726 -3.2903 20 6 2.6775 2.3280 -2.1152 21 17 4.3291 1.8931 -1.8036 22 1 -0.3634 0.5541 0.8655 23 1 -0.3633 0.4726 -0.9126 24 1 -0.3634 -1.0265 0.0470 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 0.4255 2.0463 1.1981 28 1 1.8006 3.1710 1.0844 29 1 0.7002 3.4622 4.5867 30 1 -0.9782 3.2292 -2.6841 31 1 -0.9469 4.7421 -5.7288 32 1 -1.3559 3.3155 -4.7465 33 1 -1.0902 4.8903 -3.9605 34 1 3.0818 3.2148 -4.0290 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591136.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:05 Heat of formation + Delta-G solvation = -8.492726 kcal Electronic energy + Delta-G solvation = -18742.420907 eV Core-core repulsion = 15701.654541 eV Total energy + Delta-G solvation = -3040.766366 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.93018 -39.87083 -37.82022 -37.38186 -34.68257 -33.31399 -31.67293 -30.44479 -28.59025 -27.95191 -25.21957 -24.47668 -23.84205 -21.71357 -19.25851 -18.56397 -18.28419 -17.60040 -17.04286 -16.64948 -16.19360 -16.01430 -15.43951 -15.23109 -14.73365 -14.34279 -14.11995 -13.96462 -13.64334 -13.10582 -13.02523 -12.90474 -12.69415 -12.57719 -12.52236 -12.34962 -12.00928 -11.94064 -11.64959 -11.36782 -10.60089 -10.51461 -10.40797 -9.46103 -9.17137 -8.16956 -6.26401 -0.13957 0.07951 1.03562 1.43107 1.44729 1.55607 2.25748 2.41753 2.52296 2.94459 3.16791 3.49102 3.55830 3.91948 4.07439 4.26589 4.39725 4.40866 4.43071 4.49721 4.71321 4.77414 4.80748 4.94352 5.00042 5.11170 5.23223 5.39063 5.57354 5.70237 6.05941 6.13264 6.17171 6.68161 6.80573 6.90503 7.42088 8.94520 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.022627 B = 0.005713 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.151730 B = 4900.027578 C = 5392.320166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.069 3.931 3 N -0.485 5.485 4 C 0.223 3.777 5 C -0.518 4.518 6 H 0.066 0.934 7 C 0.004 3.996 8 N -0.935 5.935 9 Si 0.968 3.032 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.261 1.261 13 C 0.257 3.743 14 N -0.478 5.478 15 C 0.024 3.976 16 C 0.086 3.914 17 O -0.314 6.314 18 C 0.012 3.988 19 C -0.100 4.100 20 C -0.036 4.036 21 Cl -0.032 7.032 22 H 0.036 0.964 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.076 0.924 27 H -0.005 1.005 28 H -0.017 1.017 29 H 0.263 0.737 30 H 0.185 0.815 31 H 0.130 0.870 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.387 -0.769 -17.608 17.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.057 4.057 3 N -0.207 5.207 4 C 0.098 3.902 5 C -0.557 4.557 6 H 0.084 0.916 7 C -0.194 4.194 8 N -0.576 5.576 9 Si 0.793 3.207 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.185 1.185 13 C 0.028 3.972 14 N -0.191 5.191 15 C -0.136 4.136 16 C 0.038 3.962 17 O -0.227 6.227 18 C -0.081 4.081 19 C -0.127 4.127 20 C -0.067 4.067 21 Cl -0.003 7.003 22 H 0.055 0.945 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.013 0.987 28 H 0.001 0.999 29 H 0.072 0.928 30 H 0.202 0.798 31 H 0.148 0.852 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.318 -0.866 -16.970 17.043 hybrid contribution -0.169 0.264 0.626 0.700 sum -1.487 -0.602 -16.344 16.423 Atomic orbital electron populations 1.22316 0.97305 1.01395 1.01984 1.21981 0.93864 0.87896 1.01997 1.60502 1.57620 1.03151 0.99439 1.19297 0.93406 0.91103 0.86399 1.21418 1.27017 1.16341 0.90880 0.91593 1.25860 0.95510 0.95367 1.02641 1.70113 1.36059 1.25465 1.25928 0.85404 0.77957 0.79207 0.78180 1.20107 1.20905 1.18549 1.20068 0.86980 0.97332 0.92860 1.68066 1.19133 1.10911 1.21024 1.23310 1.01406 0.99173 0.89684 1.19767 0.93334 0.95108 0.88032 1.86081 1.29777 1.72154 1.34645 1.23488 0.77642 1.01938 1.05075 1.20873 0.95452 0.99554 0.96819 1.21495 0.87580 1.02085 0.95540 1.98357 1.14874 1.91362 1.95753 0.94455 0.91851 0.91407 0.90778 0.90564 0.98722 0.99860 0.92824 0.79783 0.85210 0.91203 0.91790 0.80667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.64 8.99 71.98 0.65 -6.00 16 2 C 0.07 2.78 5.81 86.30 0.50 3.28 16 3 N -0.48 -22.01 4.09 -705.87 -2.89 -24.90 16 4 C 0.22 12.30 4.09 85.56 0.35 12.65 16 5 C -0.52 -29.72 8.54 25.60 0.22 -29.50 16 6 H 0.07 3.68 7.10 -2.91 -0.02 3.66 16 7 C 0.00 0.24 5.46 84.65 0.46 0.70 16 8 N -0.94 -57.39 13.29 21.45 0.28 -57.11 16 9 Si 0.97 44.88 29.54 68.60 2.03 46.90 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 13 C 0.26 10.37 5.21 132.98 0.69 11.06 16 14 N -0.48 -18.36 7.16 -192.65 -1.38 -19.74 16 15 C 0.02 0.71 10.21 84.73 0.87 1.57 16 16 C 0.09 2.25 6.71 22.57 0.15 2.40 16 17 O -0.31 -6.57 10.51 -93.71 -0.99 -7.55 16 18 C 0.01 0.16 9.82 113.37 1.11 1.27 16 19 C -0.10 -2.77 9.92 22.55 0.22 -2.54 16 20 C -0.04 -1.24 6.36 22.53 0.14 -1.10 16 21 Cl -0.03 -1.06 28.47 -2.72 -0.08 -1.14 16 22 H 0.04 1.71 6.10 -2.38 -0.01 1.69 16 23 H 0.06 2.39 5.92 -2.38 -0.01 2.38 16 24 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.07 2.60 8.11 -2.39 -0.02 2.58 16 26 H 0.08 3.21 6.91 -2.38 -0.02 3.19 16 27 H 0.00 -0.29 5.78 -2.38 -0.01 -0.31 16 28 H -0.02 -1.04 8.06 -2.39 -0.02 -1.06 16 29 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 30 H 0.19 4.09 6.30 -2.91 -0.02 4.07 16 31 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.74 7.68 -2.38 -0.02 0.72 16 33 H 0.06 0.77 7.67 -2.39 -0.02 0.75 16 34 H 0.18 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -68.98 297.77 3.46 -65.52 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: 1.11 Total: 4.23 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: 5.37 Total: -6.21 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -3.98 Total: -101.75 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.99 Total: -7.55 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.14 kcal Total: -68.98 3.46 -65.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591136.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.022 kcal (2) G-P(sol) polarization free energy of solvation -68.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds