Wall clock time and date at job start Mon Mar 30 2020 01:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46493 * 119.99899 * 270.00188 * 3 2 1 5 5 C 1.50695 * 109.47443 * 90.00099 * 4 3 2 6 6 H 1.08001 * 120.00056 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00480 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99528 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00487 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46990 * 59.99741 * 9 7 5 11 11 H 1.48497 * 109.47011 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47086 * 300.00255 * 9 7 5 13 13 C 1.39003 * 119.99589 * 90.00070 * 3 2 1 14 14 C 1.38960 * 119.66489 * 4.72986 * 13 3 2 15 15 C 1.38607 * 119.20408 * 179.75767 * 14 13 3 16 16 Cl 1.73593 * 120.73294 * 180.21964 * 15 14 13 17 17 C 1.38784 * 118.53608 * 0.50017 * 15 14 13 18 18 C 1.38679 * 119.26162 * 359.74146 * 17 15 14 19 19 O 1.35678 * 119.62837 * 179.97438 * 18 17 15 20 20 C 1.42903 * 116.99840 * 180.02562 * 19 18 17 21 21 N 1.32374 * 120.74035 * 0.02562 * 18 17 15 22 22 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 23 23 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 25 25 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 26 26 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 27 27 H 1.09006 * 109.46911 * 209.99921 * 4 3 2 28 28 H 1.08996 * 109.47170 * 329.99434 * 4 3 2 29 29 H 0.97003 * 119.99687 * 180.02562 * 8 7 5 30 30 H 1.08001 * 120.40231 * 359.97438 * 14 13 3 31 31 H 1.08005 * 120.36711 * 179.71163 * 17 15 14 32 32 H 1.09003 * 109.46924 * 59.99886 * 20 19 18 33 33 H 1.08995 * 109.47346 * 180.02562 * 20 19 18 34 34 H 1.09003 * 109.47275 * 300.00003 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 1.0067 2.7823 -1.7037 6 1 0.1157 2.7248 -1.0961 7 6 0.9952 3.5057 -2.8774 8 7 2.0804 3.5761 -3.6170 9 14 -0.5616 4.3858 -3.4170 10 1 -0.9550 5.3752 -2.3818 11 1 -0.3136 5.0869 -4.7024 12 1 -1.6536 3.3953 -3.5954 13 6 2.2500 2.0364 1.2039 14 6 2.1111 1.3448 2.4011 15 6 2.3494 2.0061 3.5957 16 17 2.1931 1.1791 5.1140 17 6 2.7099 3.3456 3.5516 18 6 2.8254 3.9763 2.3219 19 8 3.1768 5.2858 2.2701 20 6 3.2788 5.8793 0.9742 21 7 2.5956 3.3154 1.1982 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3635 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.0644 2.7985 -1.1383 28 1 2.5506 1.3452 -2.0283 29 1 2.0724 4.0854 -4.4426 30 1 1.8244 0.3036 2.4007 31 1 2.8979 3.8908 4.4647 32 1 2.3155 5.8143 0.4680 33 1 3.5665 6.9257 1.0754 34 1 4.0323 5.3505 0.3905 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591340.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:07 Heat of formation + Delta-G solvation = -0.185928 kcal Electronic energy + Delta-G solvation = -18823.545425 eV Core-core repulsion = 15783.139269 eV Total energy + Delta-G solvation = -3040.406156 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.18154 -37.99661 -36.72976 -35.67240 -32.79225 -31.82418 -30.26289 -29.47942 -27.23727 -26.12711 -23.42798 -23.18833 -21.88520 -20.47072 -17.85777 -16.87333 -16.47656 -15.83930 -15.54516 -15.20882 -14.81172 -14.25059 -13.92935 -13.75001 -13.41076 -12.87853 -12.74664 -12.16500 -12.09001 -11.89586 -11.53926 -11.42061 -11.22366 -11.04151 -10.88358 -10.82315 -10.63383 -10.49958 -10.06301 -9.69972 -9.16648 -8.98151 -8.53598 -8.46231 -6.91046 -6.05847 -4.11404 1.60109 1.83336 2.11064 3.27294 3.32175 3.34987 3.54849 3.73031 4.29691 4.40251 5.10549 5.25201 5.33527 5.45806 5.51670 5.60758 5.69559 5.74846 5.85460 5.86956 6.05374 6.17166 6.18851 6.33392 6.42151 6.48437 6.77400 7.01968 7.35315 7.53622 7.80832 7.88945 8.17661 8.21256 8.69480 8.93320 9.52402 10.99668 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.018471 B = 0.006656 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.549581 B = 4205.407473 C = 5184.031262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.123 3.877 3 N -0.580 5.580 4 C 0.254 3.746 5 C -0.517 4.517 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.469 3.531 14 C -0.288 4.288 15 C 0.082 3.918 16 Cl -0.068 7.068 17 C -0.272 4.272 18 C 0.381 3.619 19 O -0.311 6.311 20 C 0.042 3.958 21 N -0.567 5.567 22 H 0.074 0.926 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.046 0.954 28 H 0.029 0.971 29 H 0.263 0.737 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.033 -3.611 11.202 11.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.001 4.001 3 N -0.286 5.286 4 C 0.135 3.865 5 C -0.556 4.556 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.721 3.279 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.230 3.770 14 C -0.314 4.314 15 C 0.048 3.952 16 Cl -0.039 7.039 17 C -0.297 4.297 18 C 0.199 3.801 19 O -0.218 6.218 20 C -0.054 4.054 21 N -0.300 5.300 22 H 0.093 0.907 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.156 0.844 31 H 0.155 0.845 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.202 -3.109 10.327 10.852 hybrid contribution -1.051 0.127 0.188 1.076 sum 0.151 -2.982 10.516 10.931 Atomic orbital electron populations 1.22228 0.96242 1.00941 1.03455 1.21401 0.94514 0.82362 1.01795 1.47293 1.64865 1.12211 1.04273 1.19319 0.97436 0.92221 0.77505 1.21397 0.97456 1.30753 1.05962 0.92498 1.24895 0.96232 0.96398 0.96460 1.69918 1.27396 1.41783 1.14438 0.86649 0.83532 0.79946 0.77817 1.20331 1.21246 1.20329 1.17700 0.86921 0.86329 0.86046 1.21048 1.18006 1.02223 0.90151 1.20372 0.96859 0.91716 0.86270 1.98346 1.96101 1.78461 1.30978 1.20234 1.18301 0.93921 0.97251 1.19181 0.88265 0.84340 0.88359 1.86163 1.82791 1.20068 1.32765 1.22855 1.03547 0.96621 0.82334 1.66943 1.24886 1.09169 1.29002 0.90669 0.92749 0.93048 0.90442 0.91685 0.93649 0.95266 0.92756 0.84440 0.84510 0.91470 0.89309 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 10.24 37.16 0.38 -2.29 16 2 C 0.12 2.00 6.01 -4.04 -0.02 1.97 16 3 N -0.58 -11.85 2.57 -175.24 -0.45 -12.30 16 4 C 0.25 6.24 5.18 -5.20 -0.03 6.21 16 5 C -0.52 -13.74 8.92 -34.44 -0.31 -14.04 16 6 H 0.06 1.54 7.42 -52.49 -0.39 1.15 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.90 -25.37 13.29 55.43 0.74 -24.63 16 9 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.47 9.42 7.36 -155.01 -1.14 8.28 16 14 C -0.29 -4.89 9.08 -39.18 -0.36 -5.25 16 15 C 0.08 1.31 6.36 -39.24 -0.25 1.06 16 16 Cl -0.07 -0.90 29.01 -51.86 -1.50 -2.40 16 17 C -0.27 -4.55 9.85 -39.22 -0.39 -4.94 16 18 C 0.38 7.25 7.48 -17.15 -0.13 7.12 16 19 O -0.31 -5.54 10.47 -18.74 -0.20 -5.73 16 20 C 0.04 0.69 10.38 101.05 1.05 1.73 16 21 N -0.57 -12.07 8.01 -12.53 -0.10 -12.17 16 22 H 0.07 1.39 7.26 -51.93 -0.38 1.01 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.08 1.21 7.89 -51.93 -0.41 0.80 16 26 H 0.06 0.89 5.98 -51.93 -0.31 0.58 16 27 H 0.05 1.23 7.45 -51.93 -0.39 0.84 16 28 H 0.03 0.74 7.89 -51.93 -0.41 0.34 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.14 2.05 6.02 -52.49 -0.32 1.74 16 31 H 0.14 2.00 8.06 -52.48 -0.42 1.58 16 32 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 307.46 15.07 4.63 4.63 Total: -1.00 -28.53 307.46 -7.46 -35.99 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -4.27 Total: -0.95 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -1.29 Total: 1.43 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.19 Total: -49.10 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.20 Total: -5.73 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.53 -7.46 -35.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591340.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.804 kcal (2) G-P(sol) polarization free energy of solvation -28.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds