Wall clock time and date at job start Mon Mar 30 2020 01:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46493 * 119.99899 * 270.00188 * 3 2 1 5 5 C 1.50695 * 109.47443 * 90.00099 * 4 3 2 6 6 H 1.08001 * 120.00056 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00480 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99528 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00487 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46990 * 59.99741 * 9 7 5 11 11 H 1.48497 * 109.47011 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47086 * 300.00255 * 9 7 5 13 13 C 1.39003 * 119.99589 * 90.00070 * 3 2 1 14 14 C 1.38960 * 119.66489 * 4.72986 * 13 3 2 15 15 C 1.38607 * 119.20408 * 179.75767 * 14 13 3 16 16 Cl 1.73593 * 120.73294 * 180.21964 * 15 14 13 17 17 C 1.38784 * 118.53608 * 0.50017 * 15 14 13 18 18 C 1.38679 * 119.26162 * 359.74146 * 17 15 14 19 19 O 1.35678 * 119.62837 * 179.97438 * 18 17 15 20 20 C 1.42903 * 116.99840 * 180.02562 * 19 18 17 21 21 N 1.32374 * 120.74035 * 0.02562 * 18 17 15 22 22 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 23 23 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 25 25 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 26 26 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 27 27 H 1.09006 * 109.46911 * 209.99921 * 4 3 2 28 28 H 1.08996 * 109.47170 * 329.99434 * 4 3 2 29 29 H 0.97003 * 119.99687 * 180.02562 * 8 7 5 30 30 H 1.08001 * 120.40231 * 359.97438 * 14 13 3 31 31 H 1.08005 * 120.36711 * 179.71163 * 17 15 14 32 32 H 1.09003 * 109.46924 * 59.99886 * 20 19 18 33 33 H 1.08995 * 109.47346 * 180.02562 * 20 19 18 34 34 H 1.09003 * 109.47275 * 300.00003 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 1.0067 2.7823 -1.7037 6 1 0.1157 2.7248 -1.0961 7 6 0.9952 3.5057 -2.8774 8 7 2.0804 3.5761 -3.6170 9 14 -0.5616 4.3858 -3.4170 10 1 -0.9550 5.3752 -2.3818 11 1 -0.3136 5.0869 -4.7024 12 1 -1.6536 3.3953 -3.5954 13 6 2.2500 2.0364 1.2039 14 6 2.1111 1.3448 2.4011 15 6 2.3494 2.0061 3.5957 16 17 2.1931 1.1791 5.1140 17 6 2.7099 3.3456 3.5516 18 6 2.8254 3.9763 2.3219 19 8 3.1768 5.2858 2.2701 20 6 3.2788 5.8793 0.9742 21 7 2.5956 3.3154 1.1982 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3635 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.0644 2.7985 -1.1383 28 1 2.5506 1.3452 -2.0283 29 1 2.0724 4.0854 -4.4426 30 1 1.8244 0.3036 2.4007 31 1 2.8979 3.8908 4.4647 32 1 2.3155 5.8143 0.4680 33 1 3.5665 6.9257 1.0754 34 1 4.0323 5.3505 0.3905 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591340.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:07 Heat of formation + Delta-G solvation = -16.811983 kcal Electronic energy + Delta-G solvation = -18824.266385 eV Core-core repulsion = 15783.139269 eV Total energy + Delta-G solvation = -3041.127116 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.60548 -39.41580 -38.00279 -37.07935 -34.79495 -33.23334 -31.62844 -31.11800 -28.85129 -27.69283 -24.97444 -24.79351 -23.36091 -21.94880 -19.26869 -18.61959 -18.27014 -17.19960 -16.99135 -16.67432 -16.56297 -15.77331 -15.37785 -15.13907 -14.82954 -14.41892 -14.23495 -13.84944 -13.39765 -13.32367 -13.12348 -12.93509 -12.82010 -12.69794 -12.48163 -12.23856 -12.17122 -12.01506 -11.68059 -11.58519 -10.60596 -10.55289 -10.44072 -10.01903 -8.50448 -8.06096 -6.26532 0.24085 0.41139 0.85606 1.37130 1.38474 1.46093 2.15518 2.28860 2.42575 2.86457 3.14017 3.65090 4.01125 4.10600 4.21972 4.32448 4.43934 4.45631 4.46748 4.60594 4.68103 4.81666 4.92251 5.00275 5.08849 5.13845 5.19635 5.35589 5.48226 5.70810 6.03938 6.15375 6.31937 6.55316 6.83862 7.25559 7.42107 8.90418 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.018471 B = 0.006656 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.549581 B = 4205.407473 C = 5184.031262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.118 3.882 3 N -0.592 5.592 4 C 0.275 3.725 5 C -0.518 4.518 6 H 0.047 0.953 7 C 0.014 3.986 8 N -0.927 5.927 9 Si 0.952 3.048 10 H -0.279 1.279 11 H -0.281 1.281 12 H -0.269 1.269 13 C 0.445 3.555 14 C -0.276 4.276 15 C 0.082 3.918 16 Cl -0.033 7.033 17 C -0.261 4.261 18 C 0.359 3.641 19 O -0.311 6.311 20 C 0.048 3.952 21 N -0.606 5.606 22 H 0.040 0.960 23 H 0.090 0.910 24 H 0.045 0.955 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.011 0.989 28 H 0.013 0.987 29 H 0.264 0.736 30 H 0.162 0.838 31 H 0.160 0.840 32 H 0.039 0.961 33 H 0.130 0.870 34 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.248 -4.377 13.157 13.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.004 4.004 3 N -0.301 5.301 4 C 0.154 3.846 5 C -0.557 4.557 6 H 0.065 0.935 7 C -0.185 4.185 8 N -0.567 5.567 9 Si 0.778 3.222 10 H -0.205 1.205 11 H -0.206 1.206 12 H -0.194 1.194 13 C 0.208 3.792 14 C -0.302 4.302 15 C 0.047 3.953 16 Cl -0.004 7.004 17 C -0.285 4.285 18 C 0.177 3.823 19 O -0.218 6.218 20 C -0.047 4.047 21 N -0.339 5.339 22 H 0.059 0.941 23 H 0.109 0.891 24 H 0.065 0.935 25 H 0.098 0.902 26 H 0.116 0.884 27 H 0.030 0.970 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.179 0.821 31 H 0.178 0.822 32 H 0.058 0.942 33 H 0.148 0.852 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.411 -3.891 12.323 12.929 hybrid contribution -0.771 0.334 -0.270 0.883 sum -0.361 -3.557 12.053 12.572 Atomic orbital electron populations 1.22138 0.95796 1.02614 1.01410 1.21663 0.94822 0.80443 1.03493 1.47179 1.66275 1.13545 1.03073 1.18722 0.95502 0.91159 0.79240 1.21574 0.97732 1.30685 1.05757 0.93467 1.25634 0.98986 0.97176 0.96662 1.70027 1.29161 1.42689 1.14853 0.85711 0.80292 0.78872 0.77366 1.20503 1.20605 1.19387 1.18017 0.87980 0.86423 0.86827 1.21190 1.16718 1.03044 0.89215 1.20459 0.95723 0.91610 0.87465 1.98362 1.95824 1.77696 1.28544 1.20519 1.16573 0.94332 0.97117 1.19526 0.89206 0.84766 0.88767 1.86163 1.82837 1.19798 1.32983 1.22860 1.01447 0.98578 0.81775 1.66848 1.25884 1.10390 1.30790 0.94115 0.89148 0.93545 0.90217 0.88439 0.97045 0.96863 0.92701 0.82076 0.82224 0.94236 0.85182 0.93738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.85 10.24 71.98 0.74 -4.11 16 2 C 0.12 3.69 6.01 86.38 0.52 4.21 16 3 N -0.59 -24.52 2.57 -708.35 -1.82 -26.34 16 4 C 0.28 14.07 5.18 85.63 0.44 14.51 16 5 C -0.52 -28.44 8.92 25.60 0.23 -28.21 16 6 H 0.05 2.63 7.42 -2.91 -0.02 2.61 16 7 C 0.01 0.78 5.46 84.65 0.46 1.24 16 8 N -0.93 -53.95 13.29 21.45 0.28 -53.67 16 9 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 13 C 0.44 17.85 7.36 133.00 0.98 18.83 16 14 C -0.28 -8.82 9.08 22.53 0.20 -8.61 16 15 C 0.08 2.40 6.36 22.49 0.14 2.55 16 16 Cl -0.03 -0.77 29.01 -2.72 -0.08 -0.85 16 17 C -0.26 -8.23 9.85 22.51 0.22 -8.01 16 18 C 0.36 13.59 7.48 84.72 0.63 14.22 16 19 O -0.31 -11.02 10.47 -89.95 -0.94 -11.96 16 20 C 0.05 1.63 10.38 113.37 1.18 2.81 16 21 N -0.61 -26.35 8.01 -306.36 -2.45 -28.81 16 22 H 0.04 1.49 7.26 -2.39 -0.02 1.48 16 23 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.08 2.43 7.89 -2.39 -0.02 2.41 16 26 H 0.10 2.40 5.98 -2.39 -0.01 2.38 16 27 H 0.01 0.66 7.45 -2.38 -0.02 0.64 16 28 H 0.01 0.71 7.89 -2.39 -0.02 0.70 16 29 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 30 H 0.16 4.26 6.02 -2.91 -0.02 4.24 16 31 H 0.16 4.22 8.06 -2.91 -0.02 4.19 16 32 H 0.04 1.52 8.10 -2.39 -0.02 1.51 16 33 H 0.13 3.20 8.14 -2.39 -0.02 3.18 16 34 H 0.04 1.62 8.10 -2.39 -0.02 1.61 16 Total: -1.00 -63.21 307.46 3.87 -59.34 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 1.10 Total: 6.80 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 5.75 Total: 9.43 kcal Atomic # 7 Polarization: -104.82 SS G_CDS: -3.99 Total: -108.81 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -0.94 Total: -11.96 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -0.08 Total: -0.85 kcal Total: -63.21 3.87 -59.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591340.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.527 kcal (2) G-P(sol) polarization free energy of solvation -63.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds