Wall clock time and date at job start Mon Mar 30 2020 01:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.46872 * 2 1 4 4 C 1.46502 * 119.99901 * 269.99770 * 3 2 1 5 5 C 1.50695 * 109.47280 * 270.00220 * 4 3 2 6 6 H 1.08003 * 119.99887 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99897 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00214 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99772 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47217 * 89.99865 * 9 7 5 11 11 H 1.48503 * 109.47078 * 210.00288 * 9 7 5 12 12 H 1.48503 * 109.47061 * 329.99930 * 9 7 5 13 13 C 1.39056 * 120.00096 * 90.00079 * 3 2 1 14 14 C 1.38989 * 119.66031 * 4.99536 * 13 3 2 15 15 C 1.38484 * 119.23350 * 179.97438 * 14 13 3 16 16 C 1.38702 * 118.55362 * 0.02562 * 15 14 13 17 17 Cl 1.73599 * 120.36956 * 179.97438 * 16 15 14 18 18 C 1.38825 * 119.25431 * 0.25073 * 16 15 14 19 19 O 1.35696 * 119.63977 * 179.72403 * 18 16 15 20 20 C 1.42904 * 116.99651 * 180.02562 * 19 18 16 21 21 N 1.32341 * 120.71444 * 359.47830 * 18 16 15 22 22 H 1.09001 * 109.47335 * 60.00466 * 1 2 3 23 23 H 1.09005 * 109.46737 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47576 * 299.99799 * 1 2 3 25 25 H 1.08993 * 109.47391 * 240.00324 * 2 1 3 26 26 H 1.09001 * 109.47335 * 119.99534 * 2 1 3 27 27 H 1.09003 * 109.46749 * 29.99984 * 4 3 2 28 28 H 1.08996 * 109.47103 * 149.99797 * 4 3 2 29 29 H 0.96998 * 119.99998 * 179.97438 * 8 7 5 30 30 H 1.08004 * 120.38472 * 0.02562 * 14 13 3 31 31 H 1.07999 * 120.72294 * 179.97438 * 15 14 13 32 32 H 1.08998 * 109.47472 * 299.99901 * 20 19 18 33 33 H 1.09003 * 109.47316 * 59.99886 * 20 19 18 34 34 H 1.08997 * 109.47055 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3425 1.2303 -1.0962 7 6 4.1492 2.3906 -2.8775 8 7 3.3493 3.1266 -3.6176 9 14 5.9133 2.0965 -3.4171 10 1 5.9759 0.8760 -4.2606 11 1 6.3929 3.2642 -4.1993 12 1 6.7734 1.9156 -2.2201 13 6 2.2500 2.0368 1.2042 14 6 2.1165 1.3436 2.4015 15 6 2.3500 2.0050 3.5956 16 6 2.7102 3.3437 3.5526 17 17 3.0133 4.2187 5.0210 18 6 2.8201 3.9775 2.3223 19 8 3.1665 5.2885 2.2714 20 6 3.2625 5.8842 0.9760 21 7 2.5953 3.3157 1.1985 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5137 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.5816 1.6877 -2.0284 28 1 2.0954 3.1411 -1.1385 29 1 3.6755 3.5177 -4.4431 30 1 1.8348 0.3010 2.4006 31 1 2.2528 1.4898 4.5398 32 1 4.0164 5.3591 0.3895 33 1 2.2982 5.8163 0.4724 34 1 3.5458 6.9318 1.0779 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591613.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:10 Heat of formation + Delta-G solvation = -0.249493 kcal Electronic energy + Delta-G solvation = -18775.041694 eV Core-core repulsion = 15734.632781 eV Total energy + Delta-G solvation = -3040.408912 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.18282 -37.98547 -36.32914 -35.60847 -32.87163 -31.98307 -30.36034 -29.34289 -27.24168 -25.98227 -23.58116 -23.14915 -22.03139 -20.40785 -17.82727 -16.93018 -16.39797 -15.89609 -15.60273 -15.48651 -14.86699 -14.23130 -13.84998 -13.49586 -13.28334 -12.86281 -12.67153 -12.38640 -12.07463 -11.80698 -11.51016 -11.41994 -11.19777 -11.00047 -10.80115 -10.69931 -10.66469 -10.56292 -10.16183 -9.77716 -9.28532 -8.99144 -8.49100 -8.47942 -6.83841 -6.07952 -4.15253 1.73747 1.75581 2.64243 3.24783 3.31942 3.35468 3.41152 3.74332 4.26986 4.39176 4.97933 5.21857 5.26795 5.33936 5.44935 5.55008 5.60382 5.72583 5.76239 5.85121 5.99492 6.15078 6.18386 6.23642 6.35886 6.49198 6.53776 7.02218 7.36325 7.50510 7.77459 7.86158 8.16071 8.18511 8.64471 8.90664 9.49541 10.96873 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.016999 B = 0.006671 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.744836 B = 4196.568897 C = 5196.453877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.119 3.881 3 N -0.579 5.579 4 C 0.251 3.749 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.894 3.106 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.461 3.539 14 C -0.285 4.285 15 C 0.004 3.996 16 C -0.192 4.192 17 Cl -0.078 7.078 18 C 0.384 3.616 19 O -0.304 6.304 20 C 0.041 3.959 21 N -0.563 5.563 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.029 0.971 28 H 0.049 0.951 29 H 0.263 0.737 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.942 -2.031 11.160 12.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.005 4.005 3 N -0.285 5.285 4 C 0.132 3.868 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.139 4.139 8 N -0.533 5.533 9 Si 0.722 3.278 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.223 3.777 14 C -0.311 4.311 15 C -0.021 4.021 16 C -0.225 4.225 17 Cl -0.050 7.050 18 C 0.200 3.800 19 O -0.209 6.209 20 C -0.055 4.055 21 N -0.297 5.297 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.102 0.898 26 H 0.086 0.914 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.822 -1.345 10.272 11.042 hybrid contribution 0.979 -0.451 0.109 1.084 sum -2.842 -1.795 10.381 10.912 Atomic orbital electron populations 1.22220 0.96687 1.01428 1.02437 1.21421 0.93462 0.82843 1.02798 1.47318 1.64510 1.12256 1.04423 1.19334 0.96015 0.93769 0.77663 1.21450 0.96897 1.31760 1.06239 0.92603 1.24898 0.97676 0.94974 0.96352 1.69925 1.35590 1.33472 1.14337 0.86557 0.84840 0.77764 0.78642 1.20630 1.21086 1.19963 1.18008 0.86522 0.86561 0.86631 1.21215 1.17139 1.01725 0.90982 1.20842 0.92032 0.90779 0.98483 1.20235 1.22552 0.94218 0.85497 1.98289 1.95304 1.76637 1.34735 1.19108 0.88652 0.84636 0.87566 1.86253 1.82576 1.19611 1.32508 1.22863 1.03178 0.96907 0.82516 1.67018 1.25493 1.09787 1.27357 0.92165 0.92108 0.92809 0.89778 0.91358 0.95282 0.93275 0.92731 0.84652 0.84374 0.91447 0.92163 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 2 C 0.12 1.88 5.97 -4.04 -0.02 1.86 16 3 N -0.58 -11.77 2.57 -175.22 -0.45 -12.22 16 4 C 0.25 6.21 5.22 -5.20 -0.03 6.18 16 5 C -0.52 -14.19 9.39 -34.44 -0.32 -14.51 16 6 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -25.47 13.29 55.43 0.74 -24.74 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.46 9.18 7.37 -154.97 -1.14 8.04 16 14 C -0.29 -4.61 9.27 -39.21 -0.36 -4.98 16 15 C 0.00 0.06 9.96 -39.32 -0.39 -0.33 16 16 C -0.19 -3.29 6.36 -39.19 -0.25 -3.54 16 17 Cl -0.08 -1.18 28.53 -51.86 -1.48 -2.66 16 18 C 0.38 7.44 7.48 -17.12 -0.13 7.32 16 19 O -0.30 -5.58 9.94 -18.79 -0.19 -5.77 16 20 C 0.04 0.68 10.38 101.05 1.05 1.72 16 21 N -0.56 -12.01 7.93 -12.48 -0.10 -12.11 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 26 H 0.07 0.93 5.97 -51.93 -0.31 0.62 16 27 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 28 H 0.05 1.34 7.30 -51.93 -0.38 0.96 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.14 1.83 6.01 -52.48 -0.32 1.51 16 31 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 32 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 33 H 0.06 1.04 8.11 -51.93 -0.42 0.62 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 308.58 15.07 4.65 4.65 Total: -1.00 -29.54 308.58 -7.51 -37.05 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -4.34 Total: -1.95 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -1.32 Total: 1.49 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.19 Total: -49.07 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.19 Total: -5.77 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -1.48 Total: -2.66 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.54 -7.51 -37.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591613.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.798 kcal (2) G-P(sol) polarization free energy of solvation -29.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds