Wall clock time and date at job start Mon Mar 30 2020 01:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.46872 * 2 1 4 4 C 1.46502 * 119.99901 * 269.99770 * 3 2 1 5 5 C 1.50695 * 109.47280 * 270.00220 * 4 3 2 6 6 H 1.08003 * 119.99887 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99897 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00214 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99772 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47217 * 89.99865 * 9 7 5 11 11 H 1.48503 * 109.47078 * 210.00288 * 9 7 5 12 12 H 1.48503 * 109.47061 * 329.99930 * 9 7 5 13 13 C 1.39056 * 120.00096 * 90.00079 * 3 2 1 14 14 C 1.38989 * 119.66031 * 4.99536 * 13 3 2 15 15 C 1.38484 * 119.23350 * 179.97438 * 14 13 3 16 16 C 1.38702 * 118.55362 * 0.02562 * 15 14 13 17 17 Cl 1.73599 * 120.36956 * 179.97438 * 16 15 14 18 18 C 1.38825 * 119.25431 * 0.25073 * 16 15 14 19 19 O 1.35696 * 119.63977 * 179.72403 * 18 16 15 20 20 C 1.42904 * 116.99651 * 180.02562 * 19 18 16 21 21 N 1.32341 * 120.71444 * 359.47830 * 18 16 15 22 22 H 1.09001 * 109.47335 * 60.00466 * 1 2 3 23 23 H 1.09005 * 109.46737 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47576 * 299.99799 * 1 2 3 25 25 H 1.08993 * 109.47391 * 240.00324 * 2 1 3 26 26 H 1.09001 * 109.47335 * 119.99534 * 2 1 3 27 27 H 1.09003 * 109.46749 * 29.99984 * 4 3 2 28 28 H 1.08996 * 109.47103 * 149.99797 * 4 3 2 29 29 H 0.96998 * 119.99998 * 179.97438 * 8 7 5 30 30 H 1.08004 * 120.38472 * 0.02562 * 14 13 3 31 31 H 1.07999 * 120.72294 * 179.97438 * 15 14 13 32 32 H 1.08998 * 109.47472 * 299.99901 * 20 19 18 33 33 H 1.09003 * 109.47316 * 59.99886 * 20 19 18 34 34 H 1.08997 * 109.47055 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3425 1.2303 -1.0962 7 6 4.1492 2.3906 -2.8775 8 7 3.3493 3.1266 -3.6176 9 14 5.9133 2.0965 -3.4171 10 1 5.9759 0.8760 -4.2606 11 1 6.3929 3.2642 -4.1993 12 1 6.7734 1.9156 -2.2201 13 6 2.2500 2.0368 1.2042 14 6 2.1165 1.3436 2.4015 15 6 2.3500 2.0050 3.5956 16 6 2.7102 3.3437 3.5526 17 17 3.0133 4.2187 5.0210 18 6 2.8201 3.9775 2.3223 19 8 3.1665 5.2885 2.2714 20 6 3.2625 5.8842 0.9760 21 7 2.5953 3.3157 1.1985 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5137 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.5816 1.6877 -2.0284 28 1 2.0954 3.1411 -1.1385 29 1 3.6755 3.5177 -4.4431 30 1 1.8348 0.3010 2.4006 31 1 2.2528 1.4898 4.5398 32 1 4.0164 5.3591 0.3895 33 1 2.2982 5.8163 0.4724 34 1 3.5458 6.9318 1.0779 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591613.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:09 Heat of formation + Delta-G solvation = -17.898969 kcal Electronic energy + Delta-G solvation = -18775.807032 eV Core-core repulsion = 15734.632781 eV Total energy + Delta-G solvation = -3041.174251 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.58757 -39.40439 -37.68746 -36.98950 -34.86410 -33.37072 -31.67802 -30.96675 -28.81232 -27.56712 -25.17144 -24.61701 -23.48088 -21.86504 -19.23139 -18.66809 -18.20484 -17.22002 -17.05356 -16.91124 -16.61096 -15.84484 -15.29311 -14.79910 -14.67727 -14.36675 -14.15345 -13.74274 -13.55279 -13.32838 -13.01717 -12.82611 -12.78755 -12.66014 -12.43086 -12.24805 -12.19309 -11.92308 -11.78628 -11.67121 -10.67196 -10.62789 -10.40922 -9.98611 -8.44537 -8.04537 -6.32977 0.34510 0.43510 1.32889 1.35512 1.37180 1.47101 2.04754 2.27842 2.41906 2.87892 3.09712 3.59391 4.02887 4.03744 4.19464 4.33287 4.40953 4.42768 4.47046 4.62334 4.78818 4.83516 4.88307 5.04049 5.08262 5.11230 5.25976 5.38826 5.45189 5.66870 6.01661 6.11059 6.27910 6.55394 6.79955 7.22984 7.37580 8.86279 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.016999 B = 0.006671 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.744836 B = 4196.568897 C = 5196.453877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.114 3.886 3 N -0.593 5.593 4 C 0.273 3.727 5 C -0.533 4.533 6 H 0.046 0.954 7 C 0.014 3.986 8 N -0.925 5.925 9 Si 0.957 3.043 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.276 1.276 13 C 0.433 3.567 14 C -0.269 4.269 15 C 0.015 3.985 16 C -0.193 4.193 17 Cl -0.059 7.059 18 C 0.357 3.643 19 O -0.309 6.309 20 C 0.048 3.952 21 N -0.603 5.603 22 H 0.036 0.964 23 H 0.094 0.906 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.011 0.989 28 H 0.014 0.986 29 H 0.265 0.735 30 H 0.169 0.831 31 H 0.183 0.817 32 H 0.038 0.962 33 H 0.045 0.955 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.640 -3.472 13.181 14.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.008 4.008 3 N -0.301 5.301 4 C 0.152 3.848 5 C -0.572 4.572 6 H 0.065 0.935 7 C -0.185 4.185 8 N -0.565 5.565 9 Si 0.783 3.217 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.201 1.201 13 C 0.196 3.804 14 C -0.294 4.294 15 C -0.010 4.010 16 C -0.225 4.225 17 Cl -0.031 7.031 18 C 0.175 3.825 19 O -0.215 6.215 20 C -0.047 4.047 21 N -0.337 5.337 22 H 0.055 0.945 23 H 0.113 0.887 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.116 0.884 27 H 0.029 0.971 28 H 0.032 0.968 29 H 0.074 0.926 30 H 0.186 0.814 31 H 0.200 0.800 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.529 -2.800 12.329 13.127 hybrid contribution 0.861 0.032 -0.404 0.951 sum -2.668 -2.769 11.926 12.530 Atomic orbital electron populations 1.22134 0.94874 1.03273 1.01422 1.21673 0.94896 0.80619 1.03639 1.47207 1.66020 1.13708 1.03153 1.18689 0.94459 0.92139 0.79546 1.21670 0.97894 1.31391 1.06212 0.93527 1.25689 1.01571 0.94723 0.96485 1.70035 1.37392 1.34348 1.14770 0.85574 0.79965 0.78089 0.78122 1.19318 1.20637 1.20132 1.18454 0.87709 0.86640 0.87581 1.21520 1.15337 1.02939 0.89646 1.21331 0.89979 0.89827 0.99833 1.20505 1.21442 0.95130 0.85466 1.98295 1.95165 1.76487 1.33173 1.19441 0.89932 0.84982 0.88174 1.86238 1.82782 1.19628 1.32851 1.22860 1.01494 0.98500 0.81869 1.66899 1.26505 1.11174 1.29104 0.94487 0.88710 0.92485 0.90998 0.88353 0.97149 0.96806 0.92558 0.81358 0.80024 0.94274 0.93604 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 10.24 71.98 0.74 -3.30 16 2 C 0.11 3.48 5.97 86.38 0.52 4.00 16 3 N -0.59 -24.42 2.57 -708.28 -1.82 -26.25 16 4 C 0.27 14.15 5.22 85.63 0.45 14.59 16 5 C -0.53 -29.70 9.39 25.60 0.24 -29.46 16 6 H 0.05 2.63 7.81 -2.91 -0.02 2.60 16 7 C 0.01 0.81 5.46 84.66 0.46 1.27 16 8 N -0.93 -54.32 13.29 21.45 0.28 -54.03 16 9 Si 0.96 44.19 29.54 68.60 2.03 46.21 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 C 0.43 17.13 7.37 132.99 0.98 18.11 16 14 C -0.27 -7.96 9.27 22.51 0.21 -7.75 16 15 C 0.02 0.41 9.96 22.44 0.22 0.64 16 16 C -0.19 -6.22 6.36 22.52 0.14 -6.08 16 17 Cl -0.06 -1.67 28.53 -2.72 -0.08 -1.74 16 18 C 0.36 13.86 7.48 84.76 0.63 14.50 16 19 O -0.31 -11.45 9.94 -90.15 -0.90 -12.34 16 20 C 0.05 1.65 10.38 113.37 1.18 2.83 16 21 N -0.60 -26.38 7.93 -306.21 -2.43 -28.81 16 22 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 24 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 26 H 0.10 2.37 5.97 -2.39 -0.01 2.35 16 27 H 0.01 0.57 8.07 -2.39 -0.02 0.55 16 28 H 0.01 0.81 7.30 -2.39 -0.02 0.79 16 29 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 30 H 0.17 3.77 6.01 -2.91 -0.02 3.75 16 31 H 0.18 3.25 8.06 -2.91 -0.02 3.22 16 32 H 0.04 1.54 8.10 -2.39 -0.02 1.52 16 33 H 0.05 1.68 8.11 -2.39 -0.02 1.66 16 34 H 0.13 3.31 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -66.45 308.58 3.96 -62.49 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: 1.10 Total: 5.13 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 5.77 Total: 9.33 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -3.96 Total: -109.08 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -0.90 Total: -12.34 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.08 Total: -1.74 kcal Total: -66.45 3.96 -62.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591613.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.595 kcal (2) G-P(sol) polarization free energy of solvation -66.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds