Wall clock time and date at job start Mon Mar 30 2020 01:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46906 * 109.47123 * 2 1 4 4 C 1.46904 * 110.99956 * 75.81065 * 3 2 1 5 5 C 1.50703 * 109.46785 * 199.68454 * 4 3 2 6 6 H 1.07997 * 120.00154 * 4.01957 * 5 4 3 7 7 C 1.37877 * 119.99407 * 184.02390 * 5 4 3 8 8 N 1.31508 * 120.00743 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99542 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47518 * 60.00136 * 9 7 5 11 11 H 1.48503 * 109.47349 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47180 * 299.99992 * 9 7 5 13 13 C 1.39246 * 111.00044 * 199.76737 * 3 2 1 14 14 N 1.32330 * 119.72235 * 236.04299 * 13 3 2 15 15 C 1.32097 * 121.66075 * 179.97438 * 14 13 3 16 16 Cl 1.73596 * 119.53922 * 180.02562 * 15 14 13 17 17 C 1.38164 * 120.91771 * 359.97438 * 15 14 13 18 18 C 1.38809 * 119.35895 * 0.02562 * 17 15 14 19 19 C 1.38722 * 118.47444 * 359.74683 * 18 17 15 20 20 O 1.36040 * 120.48613 * 180.25055 * 19 18 17 21 21 C 1.42893 * 116.99754 * 0.22657 * 20 19 18 22 22 H 1.08990 * 109.47220 * 294.27058 * 1 2 3 23 23 H 1.08997 * 109.46951 * 54.27461 * 1 2 3 24 24 H 1.09003 * 109.46819 * 174.26934 * 1 2 3 25 25 H 1.08994 * 109.47532 * 240.00036 * 2 1 3 26 26 H 1.09006 * 109.47141 * 119.99266 * 2 1 3 27 27 H 1.08997 * 109.46835 * 319.68022 * 4 3 2 28 28 H 1.08999 * 109.46948 * 79.68615 * 4 3 2 29 29 H 0.96991 * 120.00690 * 180.02562 * 8 7 5 30 30 H 1.08008 * 120.32111 * 180.02562 * 17 15 14 31 31 H 1.08007 * 120.76614 * 180.02562 * 18 17 15 32 32 H 1.08996 * 109.47622 * 180.02562 * 21 20 19 33 33 H 1.09002 * 109.47080 * 300.00120 * 21 20 19 34 34 H 1.09007 * 109.47445 * 60.00042 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8782 1.9934 1.3296 5 6 1.9195 3.4945 1.2021 6 1 1.9735 3.9522 0.2254 7 6 1.8884 4.2834 2.3325 8 7 1.8233 3.7261 3.5218 9 14 1.9403 6.1440 2.1745 10 1 0.7726 6.6063 1.3821 11 1 1.8958 6.7570 3.5263 12 1 3.1945 6.5478 1.4894 13 6 3.3394 1.4477 -0.4397 14 7 4.2609 2.0070 0.3280 15 6 5.5239 2.0866 -0.0507 16 17 6.6873 2.8313 1.0006 17 6 5.9319 1.5844 -1.2714 18 6 4.9985 0.9892 -2.1089 19 6 3.6803 0.9152 -1.6832 20 8 2.7328 0.3359 -2.4690 21 6 3.1639 -0.1851 -3.7277 22 1 -0.3633 0.4224 0.9367 23 1 -0.3633 0.6000 -0.8343 24 1 -0.3633 -1.0226 -0.1026 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8901 27 1 0.9267 1.6921 1.7676 28 1 2.6949 1.6606 1.9702 29 1 1.8010 4.2811 4.3170 30 1 6.9672 1.6543 -1.5713 31 1 5.2926 0.5888 -3.0679 32 1 2.3123 -0.6174 -4.2530 33 1 3.5899 0.6193 -4.3273 34 1 3.9185 -0.9545 -3.5634 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591782.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:58 Heat of formation + Delta-G solvation = 12.899567 kcal Electronic energy + Delta-G solvation = -19067.103199 eV Core-core repulsion = 16027.264472 eV Total energy + Delta-G solvation = -3039.838726 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.56631 -37.97011 -36.86264 -35.80682 -32.53240 -31.82229 -30.40983 -29.10723 -27.17250 -26.52455 -23.25612 -22.77958 -21.95800 -20.34469 -17.94145 -17.00539 -16.81963 -16.08313 -15.69418 -14.78107 -14.62426 -14.26470 -14.01753 -13.75071 -13.60713 -12.97873 -12.65825 -12.29436 -11.84863 -11.62247 -11.44374 -11.40802 -11.26866 -10.83136 -10.76943 -10.68018 -10.49271 -10.20697 -9.81923 -9.65960 -9.19264 -8.99473 -8.52441 -8.21127 -7.08516 -5.87141 -3.84343 1.42638 1.56016 2.31407 3.38652 3.43838 3.46632 3.50800 4.00555 4.34340 4.61020 4.83979 4.95755 5.13629 5.21102 5.33323 5.43647 5.48626 5.50933 5.67044 5.80055 5.96459 6.03478 6.15990 6.23657 6.40778 6.52637 6.75066 7.01505 7.32959 7.49897 7.69425 8.08066 8.13732 8.43499 8.62094 9.15723 9.75720 11.24398 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.014113 B = 0.008794 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.527477 B = 3183.361467 C = 4516.507522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.052 3.948 3 N -0.464 5.464 4 C 0.194 3.806 5 C -0.484 4.484 6 H 0.054 0.946 7 C 0.061 3.939 8 N -0.899 5.899 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.344 3.656 14 N -0.441 5.441 15 C 0.170 3.830 16 Cl -0.045 7.045 17 C -0.170 4.170 18 C -0.142 4.142 19 C 0.044 3.956 20 O -0.295 6.295 21 C 0.023 3.977 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.083 0.917 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.028 0.972 29 H 0.259 0.741 30 H 0.137 0.863 31 H 0.141 0.859 32 H 0.098 0.902 33 H 0.052 0.948 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.791 -9.344 -12.271 16.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.074 4.074 3 N -0.180 5.180 4 C 0.071 3.929 5 C -0.522 4.522 6 H 0.072 0.928 7 C -0.140 4.140 8 N -0.540 5.540 9 Si 0.720 3.280 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.204 1.204 13 C 0.108 3.892 14 N -0.157 5.157 15 C 0.006 3.994 16 Cl -0.017 7.017 17 C -0.192 4.192 18 C -0.168 4.168 19 C -0.006 4.006 20 O -0.207 6.207 21 C -0.072 4.072 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.101 0.899 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.155 0.845 31 H 0.159 0.841 32 H 0.116 0.884 33 H 0.071 0.929 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.037 -8.672 -11.426 15.203 hybrid contribution 1.081 0.627 -0.401 1.312 sum 6.118 -8.045 -11.826 15.557 Atomic orbital electron populations 1.21714 0.94475 1.00556 1.03095 1.22207 0.96747 0.87462 1.01000 1.59376 1.10745 1.16014 1.31914 1.19920 0.97238 0.95090 0.80695 1.20826 1.48852 0.90100 0.92467 0.92778 1.24813 0.95690 0.98328 0.95169 1.69916 1.51548 1.35144 0.97351 0.86661 0.78498 0.85979 0.76862 1.20461 1.21413 1.20359 1.19305 0.89474 0.92369 0.88066 1.67272 0.99290 1.16387 1.32771 1.21298 0.89566 0.98211 0.90357 1.98369 1.54744 1.80931 1.67619 1.21306 1.00839 1.03373 0.93727 1.21287 0.91681 1.02964 1.00877 1.19604 0.88714 0.99971 0.92350 1.86266 1.33575 1.71913 1.28983 1.23043 1.01749 0.98131 0.84322 0.92111 0.91873 0.92931 0.89893 0.94456 0.94922 0.95435 0.93100 0.84538 0.84141 0.88400 0.92941 0.93093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.95 37.16 0.37 -1.93 16 2 C 0.05 0.95 5.34 -3.82 -0.02 0.93 16 3 N -0.46 -10.44 4.32 -174.37 -0.75 -11.20 16 4 C 0.19 5.16 4.22 -4.97 -0.02 5.14 16 5 C -0.48 -14.12 8.36 -34.44 -0.29 -14.41 16 6 H 0.05 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 9 Si 0.89 22.89 29.54 -169.99 -5.02 17.86 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 12 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 13 C 0.34 7.40 6.15 -154.70 -0.95 6.45 16 14 N -0.44 -10.16 7.88 -9.41 -0.07 -10.23 16 15 C 0.17 3.30 7.27 -17.46 -0.13 3.17 16 16 Cl -0.04 -0.82 29.10 -51.86 -1.51 -2.32 16 17 C -0.17 -2.59 9.86 -39.40 -0.39 -2.98 16 18 C -0.14 -2.02 9.13 -39.19 -0.36 -2.38 16 19 C 0.04 0.76 6.30 -38.93 -0.25 0.52 16 20 O -0.30 -4.45 7.85 -19.87 -0.16 -4.60 16 21 C 0.02 0.22 9.83 101.05 0.99 1.21 16 22 H 0.06 1.09 6.91 -51.93 -0.36 0.73 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.08 1.37 5.22 -51.93 -0.27 1.10 16 26 H 0.04 0.69 8.00 -51.93 -0.42 0.27 16 27 H 0.03 0.90 6.57 -51.93 -0.34 0.56 16 28 H 0.03 0.81 7.25 -51.93 -0.38 0.43 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.14 1.63 8.06 -52.48 -0.42 1.21 16 31 H 0.14 1.44 6.44 -52.48 -0.34 1.10 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.45 7.69 -51.93 -0.40 0.05 16 34 H 0.05 0.40 7.71 -51.93 -0.40 0.00 16 LS Contribution 299.56 15.07 4.51 4.51 Total: -1.00 -32.87 299.56 -7.53 -40.40 By element: Atomic # 1 Polarization: -1.01 SS G_CDS: -4.14 Total: -5.14 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -1.13 Total: -2.59 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.09 Total: -48.13 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.16 Total: -4.60 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.51 Total: -2.32 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.87 -7.53 -40.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591782.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.304 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds