Wall clock time and date at job start Mon Mar 30 2020 01:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46906 * 109.47123 * 2 1 4 4 C 1.46904 * 110.99956 * 75.81065 * 3 2 1 5 5 C 1.50703 * 109.46785 * 199.68454 * 4 3 2 6 6 H 1.07997 * 120.00154 * 4.01957 * 5 4 3 7 7 C 1.37877 * 119.99407 * 184.02390 * 5 4 3 8 8 N 1.31508 * 120.00743 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99542 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47518 * 60.00136 * 9 7 5 11 11 H 1.48503 * 109.47349 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47180 * 299.99992 * 9 7 5 13 13 C 1.39246 * 111.00044 * 199.76737 * 3 2 1 14 14 N 1.32330 * 119.72235 * 236.04299 * 13 3 2 15 15 C 1.32097 * 121.66075 * 179.97438 * 14 13 3 16 16 Cl 1.73596 * 119.53922 * 180.02562 * 15 14 13 17 17 C 1.38164 * 120.91771 * 359.97438 * 15 14 13 18 18 C 1.38809 * 119.35895 * 0.02562 * 17 15 14 19 19 C 1.38722 * 118.47444 * 359.74683 * 18 17 15 20 20 O 1.36040 * 120.48613 * 180.25055 * 19 18 17 21 21 C 1.42893 * 116.99754 * 0.22657 * 20 19 18 22 22 H 1.08990 * 109.47220 * 294.27058 * 1 2 3 23 23 H 1.08997 * 109.46951 * 54.27461 * 1 2 3 24 24 H 1.09003 * 109.46819 * 174.26934 * 1 2 3 25 25 H 1.08994 * 109.47532 * 240.00036 * 2 1 3 26 26 H 1.09006 * 109.47141 * 119.99266 * 2 1 3 27 27 H 1.08997 * 109.46835 * 319.68022 * 4 3 2 28 28 H 1.08999 * 109.46948 * 79.68615 * 4 3 2 29 29 H 0.96991 * 120.00690 * 180.02562 * 8 7 5 30 30 H 1.08008 * 120.32111 * 180.02562 * 17 15 14 31 31 H 1.08007 * 120.76614 * 180.02562 * 18 17 15 32 32 H 1.08996 * 109.47622 * 180.02562 * 21 20 19 33 33 H 1.09002 * 109.47080 * 300.00120 * 21 20 19 34 34 H 1.09007 * 109.47445 * 60.00042 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8782 1.9934 1.3296 5 6 1.9195 3.4945 1.2021 6 1 1.9735 3.9522 0.2254 7 6 1.8884 4.2834 2.3325 8 7 1.8233 3.7261 3.5218 9 14 1.9403 6.1440 2.1745 10 1 0.7726 6.6063 1.3821 11 1 1.8958 6.7570 3.5263 12 1 3.1945 6.5478 1.4894 13 6 3.3394 1.4477 -0.4397 14 7 4.2609 2.0070 0.3280 15 6 5.5239 2.0866 -0.0507 16 17 6.6873 2.8313 1.0006 17 6 5.9319 1.5844 -1.2714 18 6 4.9985 0.9892 -2.1089 19 6 3.6803 0.9152 -1.6832 20 8 2.7328 0.3359 -2.4690 21 6 3.1639 -0.1851 -3.7277 22 1 -0.3633 0.4224 0.9367 23 1 -0.3633 0.6000 -0.8343 24 1 -0.3633 -1.0226 -0.1026 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8901 27 1 0.9267 1.6921 1.7676 28 1 2.6949 1.6606 1.9702 29 1 1.8010 4.2811 4.3170 30 1 6.9672 1.6543 -1.5713 31 1 5.2926 0.5888 -3.0679 32 1 2.3123 -0.6174 -4.2530 33 1 3.5899 0.6193 -4.3273 34 1 3.9185 -0.9545 -3.5634 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591782.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:58 Heat of formation + Delta-G solvation = -9.086592 kcal Electronic energy + Delta-G solvation = -19068.056590 eV Core-core repulsion = 16027.264472 eV Total energy + Delta-G solvation = -3040.792118 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.91390 -39.18401 -38.39611 -37.21292 -34.72378 -33.17245 -31.76883 -30.72572 -28.35744 -28.11530 -25.09214 -24.14845 -23.39607 -21.94175 -19.14347 -18.66841 -18.29622 -17.91372 -16.78055 -16.55861 -16.21629 -15.65614 -15.37520 -15.31461 -14.83869 -14.51568 -14.12620 -13.77535 -13.42027 -13.22485 -12.96113 -12.72409 -12.67508 -12.53769 -12.38893 -12.19753 -12.07237 -11.93888 -11.57744 -11.32533 -10.97284 -10.50542 -10.44717 -9.98895 -8.59386 -8.12328 -6.17202 0.07390 0.27795 0.94628 1.35571 1.39792 1.46372 2.31421 2.40848 2.62497 2.93113 3.21016 3.65033 3.85310 4.01437 4.11221 4.28396 4.38657 4.45120 4.50848 4.64680 4.71508 4.81627 4.88902 4.98968 5.06810 5.17757 5.24457 5.37570 5.39527 5.63572 5.97728 6.09887 6.35272 6.54363 6.88099 7.10066 7.46778 8.98460 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.014113 B = 0.008794 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.527477 B = 3183.361467 C = 4516.507522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.051 3.949 3 N -0.476 5.476 4 C 0.218 3.782 5 C -0.489 4.489 6 H 0.040 0.960 7 C 0.009 3.991 8 N -0.932 5.932 9 Si 0.953 3.047 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.299 3.701 14 N -0.495 5.495 15 C 0.136 3.864 16 Cl -0.051 7.051 17 C -0.143 4.143 18 C -0.125 4.125 19 C 0.057 3.943 20 O -0.312 6.312 21 C 0.011 3.989 22 H 0.035 0.965 23 H 0.060 0.940 24 H 0.089 0.911 25 H 0.106 0.894 26 H 0.024 0.976 27 H 0.013 0.987 28 H -0.010 1.010 29 H 0.261 0.739 30 H 0.178 0.822 31 H 0.194 0.806 32 H 0.119 0.881 33 H 0.067 0.933 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.803 -10.039 -15.440 19.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.075 4.075 3 N -0.193 5.193 4 C 0.093 3.907 5 C -0.528 4.528 6 H 0.058 0.942 7 C -0.188 4.188 8 N -0.573 5.573 9 Si 0.779 3.221 10 H -0.192 1.192 11 H -0.204 1.204 12 H -0.205 1.205 13 C 0.064 3.936 14 N -0.211 5.211 15 C -0.028 4.028 16 Cl -0.023 7.023 17 C -0.165 4.165 18 C -0.151 4.151 19 C 0.006 3.994 20 O -0.225 6.225 21 C -0.084 4.084 22 H 0.054 0.946 23 H 0.079 0.921 24 H 0.108 0.892 25 H 0.124 0.876 26 H 0.042 0.958 27 H 0.030 0.970 28 H 0.008 0.992 29 H 0.070 0.930 30 H 0.195 0.805 31 H 0.211 0.789 32 H 0.138 0.862 33 H 0.085 0.915 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.061 -9.382 -14.631 18.407 hybrid contribution 0.851 0.710 0.425 1.187 sum 6.912 -8.672 -14.206 18.022 Atomic orbital electron populations 1.21671 0.93175 1.02625 1.01548 1.22346 0.97801 0.85945 1.01375 1.59420 1.12849 1.17995 1.29081 1.19339 0.94458 0.94131 0.82802 1.20991 1.48367 0.91611 0.91790 0.94198 1.25617 0.95422 1.02928 0.94857 1.70038 1.52543 1.36739 0.97966 0.85692 0.78592 0.80572 0.77282 1.19231 1.20414 1.20475 1.19471 0.88842 0.95182 0.90146 1.66998 1.01210 1.17766 1.35161 1.21683 0.88776 1.00223 0.92134 1.98352 1.54465 1.81252 1.68251 1.21782 1.02963 1.00221 0.91516 1.21841 0.89814 1.01210 1.02275 1.19508 0.90161 0.98706 0.91067 1.86227 1.33848 1.71551 1.30855 1.23479 1.03740 0.99139 0.81995 0.94630 0.92107 0.89186 0.87620 0.95783 0.96951 0.99175 0.93005 0.80499 0.78870 0.86233 0.91473 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 9.95 71.98 0.72 -3.63 16 2 C 0.05 1.89 5.34 86.30 0.46 2.35 16 3 N -0.48 -22.16 4.32 -705.59 -3.05 -25.21 16 4 C 0.22 12.29 4.22 85.56 0.36 12.65 16 5 C -0.49 -29.75 8.36 25.60 0.21 -29.54 16 6 H 0.04 2.48 7.81 -2.91 -0.02 2.46 16 7 C 0.01 0.56 5.46 84.66 0.46 1.02 16 8 N -0.93 -58.96 13.29 21.45 0.28 -58.68 16 9 Si 0.95 47.95 29.54 68.60 2.03 49.98 16 10 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 12 H -0.28 -13.98 7.11 99.48 0.71 -13.28 16 13 C 0.30 12.99 6.15 133.09 0.82 13.81 16 14 N -0.50 -23.42 7.88 -183.69 -1.45 -24.87 16 15 C 0.14 5.21 7.27 84.64 0.61 5.83 16 16 Cl -0.05 -1.87 29.10 -2.72 -0.08 -1.95 16 17 C -0.14 -3.89 9.86 22.39 0.22 -3.67 16 18 C -0.13 -3.03 9.13 22.52 0.21 -2.83 16 19 C 0.06 1.83 6.30 22.69 0.14 1.97 16 20 O -0.31 -8.45 7.85 -94.00 -0.74 -9.18 16 21 C 0.01 0.15 9.83 113.37 1.11 1.26 16 22 H 0.03 1.32 6.91 -2.39 -0.02 1.30 16 23 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.11 3.39 5.22 -2.39 -0.01 3.38 16 26 H 0.02 0.93 8.00 -2.38 -0.02 0.91 16 27 H 0.01 0.74 6.57 -2.39 -0.02 0.72 16 28 H -0.01 -0.60 7.25 -2.39 -0.02 -0.62 16 29 H 0.26 15.65 8.31 -92.72 -0.77 14.88 16 30 H 0.18 3.34 8.06 -2.91 -0.02 3.32 16 31 H 0.19 2.60 6.44 -2.91 -0.02 2.58 16 32 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 0.79 7.69 -2.39 -0.02 0.77 16 34 H 0.07 0.74 7.71 -2.38 -0.02 0.73 16 Total: -1.00 -76.56 299.56 3.44 -73.12 By element: Atomic # 1 Polarization: -3.53 SS G_CDS: 1.11 Total: -2.42 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 5.33 Total: -0.79 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -4.21 Total: -108.76 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.74 Total: -9.18 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -0.08 Total: -1.95 kcal Total: -76.56 3.44 -73.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591782.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.036 kcal (2) G-P(sol) polarization free energy of solvation -76.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds